RNA–Protein interactions for RNA: ENST00000533096.5

COPB1-209, Transcript of coatomer protein complex subunit beta 1, humanhuman

TSL 4

Gene COPB1, Length 547 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-209ENST00000533096 IQCA1LA6NCM1 817 aa17.48■□□□□ 0.39
COPB1-209ENST00000533096 FOXN1O15353 648 aa17.48■□□□□ 0.39
COPB1-209ENST00000533096 GTF2E1P29083 439 aaPredicted RBP17.48■□□□□ 0.39
COPB1-209ENST00000533096 PRKAR2BP31323 418 aa17.48■□□□□ 0.39
COPB1-209ENST00000533096 TAF1DQ9H5J8 278 aaPredicted RBP17.48■□□□□ 0.39
COPB1-209ENST00000533096 CCDC93Q567U6 631 aa17.47■□□□□ 0.39
COPB1-209ENST00000533096 TPTE2Q6XPS3 522 aa17.47■□□□□ 0.39
COPB1-209ENST00000533096 LDHDQ86WU2 507 aa17.47■□□□□ 0.39
COPB1-209ENST00000533096 NGEFQ8N5V2 710 aa17.47■□□□□ 0.39
COPB1-209ENST00000533096 AIDAQ96BJ3 306 aa17.47■□□□□ 0.39
COPB1-209ENST00000533096 NIP7Q9Y221 180 aaKnown RBP eCLIP17.47■□□□□ 0.39
COPB1-209ENST00000533096 LTBP3Q9NS15 1303 aa17.47■□□□□ 0.39
COPB1-209ENST00000533096 SNRPA1P09661 255 aaKnown RBP17.46■□□□□ 0.39
COPB1-209ENST00000533096 NPR1P16066 1061 aa17.46■□□□□ 0.39
COPB1-209ENST00000533096 VEGFBP49765 207 aa17.46■□□□□ 0.39
COPB1-209ENST00000533096 MCM10Q7L590 875 aa17.46■□□□□ 0.39
COPB1-209ENST00000533096 C7orf43Q8WVR3 580 aa17.46■□□□□ 0.39
COPB1-209ENST00000533096 RTF1Q92541 710 aaKnown RBP17.46■□□□□ 0.39
COPB1-209ENST00000533096 ZNF652Q9Y2D9 606 aa17.46■□□□□ 0.39
COPB1-209ENST00000533096 SCN11AQ9UI33 1791 aa17.45■□□□□ 0.38
COPB1-209ENST00000533096 TNRC6CQ9HCJ0 1690 aaKnown RBP17.45■□□□□ 0.38
COPB1-209ENST00000533096 MRC1P22897 1456 aa17.45■□□□□ 0.38
COPB1-209ENST00000533096 TMEM88BA6NKF7 163 aa17.45■□□□□ 0.38
COPB1-209ENST00000533096 DCTN1Q14203 1278 aa17.45■□□□□ 0.38
COPB1-209ENST00000533096 HACL1Q9UJ83 578 aa17.45■□□□□ 0.38
COPB1-209ENST00000533096 SBF1O95248 1867 aa17.45■□□□□ 0.38
COPB1-209ENST00000533096 FKBP4Q02790 459 aaKnown RBP eCLIP17.44■□□□□ 0.38
COPB1-209ENST00000533096 CLEC4GQ6UXB4 293 aa17.44■□□□□ 0.38
COPB1-209ENST00000533096 SYNE4Q8N205 404 aa17.44■□□□□ 0.38
COPB1-209ENST00000533096 MIS18AQ9NYP9 233 aa17.44■□□□□ 0.38
COPB1-209ENST00000533096 AFDNP55196 1824 aaKnown RBP17.43■□□□□ 0.38
COPB1-209ENST00000533096 ITGBL1O95965 494 aaPredicted RBP17.43■□□□□ 0.38
COPB1-209ENST00000533096 U2AF1L5P0DN76 240 aaPredicted RBP17.43■□□□□ 0.38
COPB1-209ENST00000533096 EPHX2P34913 555 aa17.43■□□□□ 0.38
COPB1-209ENST00000533096 U2AF1Q01081 240 aaKnown RBP eCLIP17.43■□□□□ 0.38
COPB1-209ENST00000533096 MAP1SQ66K74 1059 aaPredicted RBP17.43■□□□□ 0.38
COPB1-209ENST00000533096 RTKN2Q8IZC4 609 aa17.43■□□□□ 0.38
COPB1-209ENST00000533096 CFAP53Q96M91 514 aa17.43■□□□□ 0.38
COPB1-209ENST00000533096 ZNF541Q9H0D2 1346 aa17.43■□□□□ 0.38
COPB1-209ENST00000533096 NBPF26B4DH59 902 aa17.42■□□□□ 0.38
COPB1-209ENST00000533096 TCERG1O14776 1098 aaKnown RBP17.42■□□□□ 0.38
COPB1-209ENST00000533096 CTCFP49711 727 aaPredicted RBP17.42■□□□□ 0.38
COPB1-209ENST00000533096 LBX1P52954 281 aa17.42■□□□□ 0.38
COPB1-209ENST00000533096 HLFQ16534 295 aa17.42■□□□□ 0.38
COPB1-209ENST00000533096 NBPF10Q6P3W6 841 aaKnown RBP17.42■□□□□ 0.38
COPB1-209ENST00000533096 CNTROBQ8N137 903 aa17.42■□□□□ 0.38
COPB1-209ENST00000533096 NBPF15Q8N660 670 aa17.42■□□□□ 0.38
COPB1-209ENST00000533096 NUDCQ9Y266 331 aa17.42■□□□□ 0.38
COPB1-209ENST00000533096 GJA3Q9Y6H8 435 aa17.42■□□□□ 0.38
COPB1-209ENST00000533096 PASKQ96RG2 1323 aa17.42■□□□□ 0.38
COPB1-209ENST00000533096 CNTNAP1P78357 1384 aa17.41■□□□□ 0.38
COPB1-209ENST00000533096 ALDH1B1P30837 517 aa17.41■□□□□ 0.38
COPB1-209ENST00000533096 DEFB115Q30KQ5 88 aa17.41■□□□□ 0.38
COPB1-209ENST00000533096 L3MBTL3Q96JM7 780 aaPredicted RBP17.41■□□□□ 0.38
COPB1-209ENST00000533096 RSPH6AQ9H0K4 717 aa17.41■□□□□ 0.38
COPB1-209ENST00000533096 RNF123Q5XPI4 1314 aa17.41■□□□□ 0.38
COPB1-209ENST00000533096 NRXN2Q9P2S2 1712 aa17.41■□□□□ 0.38
COPB1-209ENST00000533096 JDP2Q8WYK2 163 aa17.4■□□□□ 0.38
COPB1-209ENST00000533096 ABT1Q9ULW3 272 aaKnown RBP17.4■□□□□ 0.38
COPB1-209ENST00000533096 IARSP41252 1262 aaKnown RBP17.39■□□□□ 0.37
COPB1-209ENST00000533096 GRM1Q13255 1194 aa17.39■□□□□ 0.37
COPB1-209ENST00000533096 PNMA8AQ86V59 439 aaPredicted RBP17.39■□□□□ 0.37
COPB1-209ENST00000533096 NUTM1Q86Y26 1132 aa17.39■□□□□ 0.37
COPB1-209ENST00000533096 PRDM10Q9NQV6 1147 aa17.39■□□□□ 0.37
COPB1-209ENST00000533096 KLRG2A4D1S0 409 aaPredicted RBP17.38■□□□□ 0.37
COPB1-209ENST00000533096 PAXIP1Q6ZW49 1069 aaPredicted RBP17.38■□□□□ 0.37
COPB1-209ENST00000533096 RRP7AQ9Y3A4 280 aaKnown RBP17.38■□□□□ 0.37
COPB1-209ENST00000533096 CEMIPQ8WUJ3 1361 aa17.38■□□□□ 0.37
COPB1-209ENST00000533096 TAF7Q15545 349 aaPredicted RBP17.37■□□□□ 0.37
COPB1-209ENST00000533096 WBP1LQ9NX94 342 aa17.37■□□□□ 0.37
COPB1-209ENST00000533096 FZD9O00144 591 aa17.36■□□□□ 0.37
COPB1-209ENST00000533096 EIF6P56537 245 aaKnown RBP17.36■□□□□ 0.37
COPB1-209ENST00000533096 FMR1Q06787 632 aaKnown RBP eCLIP17.36■□□□□ 0.371e-6■■■□□ 17.7
COPB1-209ENST00000533096 GPTP24298 496 aa17.35■□□□□ 0.37
COPB1-209ENST00000533096 GPC2Q8N158 579 aa17.35■□□□□ 0.37
COPB1-209ENST00000533096 RPGRQ92834 1020 aaKnown RBP17.35■□□□□ 0.37
COPB1-209ENST00000533096 MYL6BP14649 208 aa17.34■□□□□ 0.37
COPB1-209ENST00000533096 LMOD1P29536 600 aaPredicted RBP17.34■□□□□ 0.37
COPB1-209ENST00000533096 SLX4Q8IY92 1834 aa17.34■□□□□ 0.37
COPB1-209ENST00000533096 WDR33Q9C0J8 1336 aaKnown RBP17.34■□□□□ 0.37
COPB1-209ENST00000533096 TIAM2Q8IVF5 1701 aa17.33■□□□□ 0.37
COPB1-209ENST00000533096 TTLL7Q6ZT98 887 aa17.33■□□□□ 0.36
COPB1-209ENST00000533096 LARGE2Q8N3Y3 721 aa17.33■□□□□ 0.36
COPB1-209ENST00000533096 RASSF10A6NK89 507 aa17.32■□□□□ 0.36
COPB1-209ENST00000533096 PPP2R1AP30153 589 aa17.32■□□□□ 0.36
COPB1-209ENST00000533096 EPS15P42566 896 aa17.32■□□□□ 0.36
COPB1-209ENST00000533096 MAP2K1Q02750 393 aaPredicted RBP17.32■□□□□ 0.36
COPB1-209ENST00000533096 NYXQ9GZU5 481 aa17.32■□□□□ 0.36
COPB1-209ENST00000533096 ZBTB3Q9H5J0 574 aa17.32■□□□□ 0.36
COPB1-209ENST00000533096 DDX21Q9NR30 783 aaKnown RBP eCLIP17.32■□□□□ 0.36
COPB1-209ENST00000533096 COL3A1P02461 1466 aaPredicted RBP17.31■□□□□ 0.36
COPB1-209ENST00000533096 CCDC88AQ3V6T2 1871 aa17.31■□□□□ 0.36
COPB1-209ENST00000533096 ANKRD31Q8N7Z5 1873 aa17.31■□□□□ 0.36
COPB1-209ENST00000533096 DLEC1Q9Y238 1755 aa17.31■□□□□ 0.36
COPB1-209ENST00000533096 HTATSF1O43719 755 aaKnown RBP17.31■□□□□ 0.36
COPB1-209ENST00000533096 HSPA8P11142 646 aaKnown RBP17.31■□□□□ 0.36
COPB1-209ENST00000533096 SUSD4Q5VX71 490 aa17.31■□□□□ 0.36
COPB1-209ENST00000533096 KIF6Q6ZMV9 814 aa17.31■□□□□ 0.36
COPB1-209ENST00000533096 SLC51AQ86UW1 340 aa17.31■□□□□ 0.36
COPB1-209ENST00000533096 RBM17Q96I25 401 aaKnown RBP17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms