RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 DLG5Q8TDM6 1919 aa15.11■□□□□ 0.01
VPS28-214ENST00000531032 DICER1Q9UPY3 1922 aaKnown RBP15.1■□□□□ 0.01
VPS28-214ENST00000531032 NBPF26B4DH59 902 aa15.1■□□□□ 0.01
VPS28-214ENST00000531032 C21orf2O43822 256 aa15.1■□□□□ 0.01
VPS28-214ENST00000531032 SRGNP10124 158 aa15.1■□□□□ 0.01
VPS28-214ENST00000531032 TAF7Q15545 349 aaPredicted RBP15.1■□□□□ 0.01
VPS28-214ENST00000531032 STYK1Q6J9G0 422 aa15.1■□□□□ 0.01
VPS28-214ENST00000531032 NBPF10Q6P3W6 841 aaKnown RBP15.1■□□□□ 0.01
VPS28-214ENST00000531032 NBPF15Q8N660 670 aa15.1■□□□□ 0.01
VPS28-214ENST00000531032 KDM3BQ7LBC6 1761 aa15.09■□□□□ 0.01
VPS28-214ENST00000531032 SLX4Q8IY92 1834 aa15.09■□□□□ 0.01
VPS28-214ENST00000531032 NPHP1O15259 732 aa15.09■□□□□ 0.01
VPS28-214ENST00000531032 IFFO2Q5TF58 517 aa15.09■□□□□ 0.01
VPS28-214ENST00000531032 CNKSR1Q969H4 720 aa15.09■□□□□ 0.01
VPS28-214ENST00000531032 ZNF652Q9Y2D9 606 aa15.09■□□□□ 0.01
VPS28-214ENST00000531032 CACNA1SQ13698 1873 aa15.09■□□□□ 0.01
VPS28-214ENST00000531032 LTBP3Q9NS15 1303 aa15.09■□□□□ 0.01
VPS28-214ENST00000531032 VEGFAP15692 232 aaPredicted RBP15.08■□□□□ 0
VPS28-214ENST00000531032 PRPF40BQ6NWY9 871 aaKnown RBP15.08■□□□□ 0
VPS28-214ENST00000531032 SMC1BQ8NDV3 1235 aa15.08■□□□□ 0
VPS28-214ENST00000531032 MASTLQ96GX5 879 aa15.08■□□□□ 0
VPS28-214ENST00000531032 PLEKHF1Q96S99 279 aa15.08■□□□□ 0
VPS28-214ENST00000531032 NBPF5PQ86XG9 351 aaPredicted RBP15.07■□□□□ 0
VPS28-214ENST00000531032 NEFMP07197 916 aa15.06■□□□□ 0
VPS28-214ENST00000531032 ERFEQ4G0M1 354 aa15.06■□□□□ 0
VPS28-214ENST00000531032 SOGA3Q5TF21 947 aa15.06■□□□□ 0
VPS28-214ENST00000531032 PNISRQ8TF01 805 aaKnown RBP15.06■□□□□ 0
VPS28-214ENST00000531032 TAOK3Q9H2K8 898 aa15.06■□□□□ 0
VPS28-214ENST00000531032 MIS18AQ9NYP9 233 aa15.06■□□□□ 0
VPS28-214ENST00000531032 ZNF219Q9P2Y4 722 aaPredicted RBP15.06■□□□□ 0
VPS28-214ENST00000531032 KLRG2A4D1S0 409 aaPredicted RBP15.05■□□□□ -0
VPS28-214ENST00000531032 POTECB2RU33 542 aa15.05■□□□□ -0
VPS28-214ENST00000531032 HTRA3P83110 453 aa15.05■□□□□ -0
VPS28-214ENST00000531032 NIP7Q9Y221 180 aaKnown RBP eCLIP15.05■□□□□ -0
VPS28-214ENST00000531032 NFE2L2Q16236 605 aa15.04■□□□□ -0
VPS28-214ENST00000531032 DPY19L2Q6NUT2 758 aa15.04■□□□□ -0
VPS28-214ENST00000531032 TPTE2Q6XPS3 522 aa15.04■□□□□ -0
VPS28-214ENST00000531032 C7orf43Q8WVR3 580 aa15.04■□□□□ -0
VPS28-214ENST00000531032 KLRG1Q96E93 195 aa15.04■□□□□ -0
VPS28-214ENST00000531032 NPR1P16066 1061 aa15.03■□□□□ -0
VPS28-214ENST00000531032 EIF4A1P60842 406 aaKnown RBP15.03■□□□□ -0
VPS28-214ENST00000531032 HLFQ16534 295 aa15.03■□□□□ -0
VPS28-214ENST00000531032 JMYQ8N9B5 988 aa15.03■□□□□ -0
VPS28-214ENST00000531032 THUMPD2Q9BTF0 503 aaKnown RBP15.02■□□□□ -0
VPS28-214ENST00000531032 PNNQ9H307 717 aaKnown RBP15.02■□□□□ -0
VPS28-214ENST00000531032 NUP98P52948 1817 aa15.01□□□□□ -0.01
VPS28-214ENST00000531032 MAPK8IP3Q9UPT6 1336 aa15.01□□□□□ -0.01
VPS28-214ENST00000531032 ERVV-1B6SEH8 477 aa15.01□□□□□ -0.01
VPS28-214ENST00000531032 CCDC93Q567U6 631 aa15.01□□□□□ -0.01
VPS28-214ENST00000531032 MAP3K15Q6ZN16 1313 aa15□□□□□ -0.01
VPS28-214ENST00000531032 ABCC12Q96J65 1359 aa14.99□□□□□ -0.01
VPS28-214ENST00000531032 FAM177BA6PVY3 158 aa14.99□□□□□ -0.01
VPS28-214ENST00000531032 NYXQ9GZU5 481 aa14.99□□□□□ -0.01
VPS28-214ENST00000531032 RIC1Q4ADV7 1423 aa14.99□□□□□ -0.01
VPS28-214ENST00000531032 IBTKQ9P2D0 1353 aaPredicted RBP14.98□□□□□ -0.01
VPS28-214ENST00000531032 ERBB4Q15303 1308 aa14.98□□□□□ -0.01
VPS28-214ENST00000531032 DDNO94850 711 aaPredicted RBP14.98□□□□□ -0.01
VPS28-214ENST00000531032 FKBP4Q02790 459 aaKnown RBP eCLIP14.98□□□□□ -0.01
VPS28-214ENST00000531032 CRY2Q49AN0 593 aa14.98□□□□□ -0.01
VPS28-214ENST00000531032 KIF6Q6ZMV9 814 aa14.98□□□□□ -0.01
VPS28-214ENST00000531032 NGEFQ8N5V2 710 aa14.98□□□□□ -0.01
VPS28-214ENST00000531032 SNED1Q8TER0 1413 aa14.98□□□□□ -0.01
VPS28-214ENST00000531032 SCN4AP35499 1836 aa14.97□□□□□ -0.01
VPS28-214ENST00000531032 PCNTO95613 3336 aa14.97□□□□□ -0.01
VPS28-214ENST00000531032 MYL6BP14649 208 aa14.97□□□□□ -0.01
VPS28-214ENST00000531032 GTF2E1P29083 439 aaPredicted RBP14.97□□□□□ -0.01
VPS28-214ENST00000531032 ALDH1B1P30837 517 aa14.97□□□□□ -0.01
VPS28-214ENST00000531032 RALBP1Q15311 655 aa14.97□□□□□ -0.01
VPS28-214ENST00000531032 TTLL7Q6ZT98 887 aa14.97□□□□□ -0.01
VPS28-214ENST00000531032 RTKN2Q8IZC4 609 aa14.97□□□□□ -0.01
VPS28-214ENST00000531032 L3MBTL3Q96JM7 780 aaPredicted RBP14.97□□□□□ -0.01
VPS28-214ENST00000531032 RRP7AQ9Y3A4 280 aaKnown RBP14.97□□□□□ -0.01
VPS28-214ENST00000531032 UBN2Q6ZU65 1347 aa14.96□□□□□ -0.01
VPS28-214ENST00000531032 OLFM4Q6UX06 510 aa14.96□□□□□ -0.01
VPS28-214ENST00000531032 NUTM1Q86Y26 1132 aa14.96□□□□□ -0.01
VPS28-214ENST00000531032 ZNF277Q9NRM2 450 aaPredicted RBP14.96□□□□□ -0.01
VPS28-214ENST00000531032 IQCA1LA6NCM1 817 aa14.95□□□□□ -0.02
VPS28-214ENST00000531032 CHADLQ6NUI6 762 aa14.95□□□□□ -0.02
VPS28-214ENST00000531032 LRP10Q7Z4F1 713 aa14.95□□□□□ -0.02
VPS28-214ENST00000531032 ZNF34Q8IZ26 560 aa14.95□□□□□ -0.02
VPS28-214ENST00000531032 ZBTB3Q9H5J0 574 aa14.95□□□□□ -0.02
VPS28-214ENST00000531032 BABAM1Q9NWV8 329 aa14.95□□□□□ -0.02
VPS28-214ENST00000531032 TSPYL4Q9UJ04 414 aa14.95□□□□□ -0.02
VPS28-214ENST00000531032 ZNF541Q9H0D2 1346 aa14.94□□□□□ -0.02
VPS28-214ENST00000531032 POTEIP0CG38 1075 aa14.94□□□□□ -0.02
VPS28-214ENST00000531032 POTEJP0CG39 1038 aa14.94□□□□□ -0.02
VPS28-214ENST00000531032 GPTP24298 496 aa14.94□□□□□ -0.02
VPS28-214ENST00000531032 RIPK4P57078 832 aa14.94□□□□□ -0.02
VPS28-214ENST00000531032 SUSD4Q5VX71 490 aa14.94□□□□□ -0.02
VPS28-214ENST00000531032 GIGYF2Q6Y7W6 1299 aaKnown RBP14.94□□□□□ -0.02
VPS28-214ENST00000531032 NTSR2O95665 410 aa14.93□□□□□ -0.02
VPS28-214ENST00000531032 HOXA10P31260 410 aaPredicted RBP14.93□□□□□ -0.02
VPS28-214ENST00000531032 IARSP41252 1262 aaKnown RBP14.93□□□□□ -0.02
VPS28-214ENST00000531032 TMPOP42166 694 aaKnown RBP14.93□□□□□ -0.02
VPS28-214ENST00000531032 LMOD3Q0VAK6 560 aa14.93□□□□□ -0.02
VPS28-214ENST00000531032 PDIA6Q15084 440 aa14.93□□□□□ -0.02
VPS28-214ENST00000531032 PSMD1Q99460 953 aa14.93□□□□□ -0.02
VPS28-214ENST00000531032 FZD9O00144 591 aa14.92□□□□□ -0.02
VPS28-214ENST00000531032 CC2D2BQ6DHV5 1058 aa14.92□□□□□ -0.02
VPS28-214ENST00000531032 LDHDQ86WU2 507 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms