RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 LIMCH1Q9UPQ0 1083 aa23.2■■□□□ 1.3
VPS28-213ENST00000530983 PROSER3Q2NL68 480 aa23.2■■□□□ 1.3
VPS28-213ENST00000530983 CLASRPQ8N2M8 674 aaKnown RBP23.2■■□□□ 1.3
VPS28-213ENST00000530983 MAP3K2Q9Y2U5 619 aa23.2■■□□□ 1.3
VPS28-213ENST00000530983 RNMTO43148 476 aaKnown RBP23.19■■□□□ 1.3
VPS28-213ENST00000530983 ZNF500O60304 480 aaPredicted RBP23.19■■□□□ 1.3
VPS28-213ENST00000530983 PSME1Q06323 249 aa23.19■■□□□ 1.3
VPS28-213ENST00000530983 ANKLE2Q86XL3 938 aa23.19■■□□□ 1.3
VPS28-213ENST00000530983 PDCL3Q9H2J4 239 aa23.19■■□□□ 1.3
VPS28-213ENST00000530983 NCAPD2Q15021 1401 aa23.19■■□□□ 1.3
VPS28-213ENST00000530983 DIAPH3Q9NSV4 1193 aa23.19■■□□□ 1.3
VPS28-213ENST00000530983 ALDH1L1O75891 902 aa23.18■■□□□ 1.3
VPS28-213ENST00000530983 ZSCAN22P10073 491 aaPredicted RBP23.18■■□□□ 1.3
VPS28-213ENST00000530983 CPA1P15085 419 aa23.18■■□□□ 1.3
VPS28-213ENST00000530983 ECHDC1Q9NTX5 307 aa23.18■■□□□ 1.3
VPS28-213ENST00000530983 ZKSCAN5Q9Y2L8 839 aa23.18■■□□□ 1.3
VPS28-213ENST00000530983 HEG1Q9ULI3 1381 aa23.18■■□□□ 1.3
VPS28-213ENST00000530983 GIGYF1O75420 1035 aaPredicted RBP23.17■■□□□ 1.3
VPS28-213ENST00000530983 CASTP20810 708 aaKnown RBP23.17■■□□□ 1.3
VPS28-213ENST00000530983 AMOTQ4VCS5 1084 aa23.17■■□□□ 1.3
VPS28-213ENST00000530983 ESCO1Q5FWF5 840 aa23.17■■□□□ 1.3
VPS28-213ENST00000530983 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.17■■□□□ 1.3
VPS28-213ENST00000530983 C9orf78Q9NZ63 289 aaPredicted RBP23.17■■□□□ 1.3
VPS28-213ENST00000530983 PA2G4Q9UQ80 394 aaKnown RBP23.17■■□□□ 1.3
VPS28-213ENST00000530983 SYT1P21579 422 aa23.17■■□□□ 1.3
VPS28-213ENST00000530983 PTH1RQ03431 593 aa23.17■■□□□ 1.3
VPS28-213ENST00000530983 CNPY2Q9Y2B0 182 aa23.17■■□□□ 1.3
VPS28-213ENST00000530983 OVOS2A0A0G2JMS6 1433 aa23.16■■□□□ 1.3
VPS28-213ENST00000530983 STX6O43752 255 aa23.16■■□□□ 1.3
VPS28-213ENST00000530983 PHF14O94880 888 aa23.16■■□□□ 1.3
VPS28-213ENST00000530983 LARGE1O95461 756 aa23.16■■□□□ 1.3
VPS28-213ENST00000530983 KSR2Q6VAB6 950 aa23.16■■□□□ 1.3
VPS28-213ENST00000530983 HYPKQ9NX55 129 aa23.16■■□□□ 1.3
VPS28-213ENST00000530983 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.16■■□□□ 1.3
VPS28-213ENST00000530983 SIPA1L3O60292 1781 aaPredicted RBP23.16■■□□□ 1.3
VPS28-213ENST00000530983 PRAMEF22A3QJZ6 481 aa23.16■■□□□ 1.3
VPS28-213ENST00000530983 CWF19L2Q2TBE0 894 aaKnown RBP23.16■■□□□ 1.3
VPS28-213ENST00000530983 RUFY2Q8WXA3 655 aa23.16■■□□□ 1.3
VPS28-213ENST00000530983 C1orf141Q5JVX7 400 aa23.15■■□□□ 1.3
VPS28-213ENST00000530983 ADCK5Q3MIX3 580 aa23.15■■□□□ 1.3
VPS28-213ENST00000530983 CCDC39Q9UFE4 941 aa23.15■■□□□ 1.3
VPS28-213ENST00000530983 ZNF142P52746 1687 aaPredicted RBP23.14■■□□□ 1.3
VPS28-213ENST00000530983 IFIT2P09913 472 aaKnown RBP23.14■■□□□ 1.29
VPS28-213ENST00000530983 ERC1Q8IUD2 1116 aa23.14■■□□□ 1.29
VPS28-213ENST00000530983 KCNB2Q92953 911 aa23.14■■□□□ 1.29
VPS28-213ENST00000530983 SMC3Q9UQE7 1217 aa23.14■■□□□ 1.29
VPS28-213ENST00000530983 MCM5P33992 734 aa23.13■■□□□ 1.29
VPS28-213ENST00000530983 PRPF40BQ6NWY9 871 aaKnown RBP23.13■■□□□ 1.29
VPS28-213ENST00000530983 ARHGEF25Q86VW2 580 aa23.13■■□□□ 1.29
VPS28-213ENST00000530983 F13A1P00488 732 aa23.13■■□□□ 1.29
VPS28-213ENST00000530983 GCP02774 474 aa23.13■■□□□ 1.29
VPS28-213ENST00000530983 XPCQ01831 940 aaPredicted RBP23.13■■□□□ 1.29
VPS28-213ENST00000530983 VPS53Q5VIR6 699 aa23.13■■□□□ 1.29
VPS28-213ENST00000530983 GPATCH3Q96I76 525 aa23.13■■□□□ 1.29
VPS28-213ENST00000530983 JAKMIP1Q96N16 626 aaKnown RBP23.13■■□□□ 1.29
VPS28-213ENST00000530983 SLIT3O75094 1523 aa23.12■■□□□ 1.29
VPS28-213ENST00000530983 CAMTA1Q9Y6Y1 1673 aa23.12■■□□□ 1.29
VPS28-213ENST00000530983 KAZALD1Q96I82 304 aa23.12■■□□□ 1.29
VPS28-213ENST00000530983 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.12■■□□□ 1.29
VPS28-213ENST00000530983 AACSQ86V21 672 aa23.11■■□□□ 1.29
VPS28-213ENST00000530983 EVI5LQ96CN4 794 aa23.11■■□□□ 1.29
VPS28-213ENST00000530983 TM6SF1Q9BZW5 370 aa23.11■■□□□ 1.29
VPS28-213ENST00000530983 ZSWIM6Q9HCJ5 1215 aa23.11■■□□□ 1.29
VPS28-213ENST00000530983 TERF1P54274 439 aa23.11■■□□□ 1.29
VPS28-213ENST00000530983 CCDC183Q5T5S1 534 aa23.11■■□□□ 1.29
VPS28-213ENST00000530983 PDRG1Q9NUG6 133 aa23.11■■□□□ 1.29
VPS28-213ENST00000530983 NECTIN1Q15223 517 aa23.1■■□□□ 1.29
VPS28-213ENST00000530983 CCDC83Q8IWF9 413 aa23.1■■□□□ 1.29
VPS28-213ENST00000530983 LINS1Q8NG48 757 aa23.1■■□□□ 1.29
VPS28-213ENST00000530983 SUCLG2Q96I99 432 aa23.1■■□□□ 1.29
VPS28-213ENST00000530983 HDAC5Q9UQL6 1122 aa23.1■■□□□ 1.29
VPS28-213ENST00000530983 GRM8O00222 908 aa23.1■■□□□ 1.29
VPS28-213ENST00000530983 SASH1O94885 1247 aa23.1■■□□□ 1.29
VPS28-213ENST00000530983 UBE2HP62256 183 aa23.1■■□□□ 1.29
VPS28-213ENST00000530983 ANKRD24Q8TF21 1146 aa23.1■■□□□ 1.29
VPS28-213ENST00000530983 UTYO14607 1347 aa23.1■■□□□ 1.29
VPS28-213ENST00000530983 CCDC171Q6TFL3 1326 aa23.1■■□□□ 1.29
VPS28-213ENST00000530983 ADAMTS7Q9UKP4 1686 aa23.1■■□□□ 1.29
VPS28-213ENST00000530983 GJB2P29033 226 aa23.09■■□□□ 1.29
VPS28-213ENST00000530983 CYP46A1Q9Y6A2 500 aa23.09■■□□□ 1.29
VPS28-213ENST00000530983 ST3GAL1Q11201 340 aa23.09■■□□□ 1.29
VPS28-213ENST00000530983 FAM184AQ8NB25 1140 aa23.09■■□□□ 1.29
VPS28-213ENST00000530983 EAF2Q96CJ1 260 aaPredicted RBP23.08■■□□□ 1.29
VPS28-213ENST00000530983 BICC1Q9H694 974 aaKnown RBP23.08■■□□□ 1.29
VPS28-213ENST00000530983 ATP6V1DQ9Y5K8 247 aa23.08■■□□□ 1.29
VPS28-213ENST00000530983 DTNBO60941 627 aa23.08■■□□□ 1.28
VPS28-213ENST00000530983 TRHP20396 242 aaPredicted RBP23.08■■□□□ 1.28
VPS28-213ENST00000530983 ZSCAN31Q96LW9 406 aaPredicted RBP23.08■■□□□ 1.28
VPS28-213ENST00000530983 SH2B1Q9NRF2 756 aaPredicted RBP23.08■■□□□ 1.28
VPS28-213ENST00000530983 FIBPO43427 364 aa23.07■■□□□ 1.28
VPS28-213ENST00000530983 FAM227BQ96M60 508 aa23.07■■□□□ 1.28
VPS28-213ENST00000530983 MTMR6Q9Y217 621 aa23.07■■□□□ 1.28
VPS28-213ENST00000530983 ORAI2Q96SN7 254 aa23.07■■□□□ 1.28
VPS28-213ENST00000530983 DDX21Q9NR30 783 aaKnown RBP eCLIP23.07■■□□□ 1.28
VPS28-213ENST00000530983 AXIN2Q9Y2T1 843 aa23.07■■□□□ 1.28
VPS28-213ENST00000530983 R3HCC1Q9Y3T6 440 aaKnown RBP23.07■■□□□ 1.28
VPS28-213ENST00000530983 RBM8AQ9Y5S9 174 aaKnown RBP23.07■■□□□ 1.28
VPS28-213ENST00000530983 RBM10P98175 930 aaKnown RBP23.06■■□□□ 1.28
VPS28-213ENST00000530983 PDIA6Q15084 440 aa23.06■■□□□ 1.28
VPS28-213ENST00000530983 NMIQ13287 307 aaPredicted RBP23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms