RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 NRAPQ86VF7 1730 aa9.8□□□□□ -0.84
CD44-228ENST00000528455 U2AF1L5P0DN76 240 aaPredicted RBP9.8□□□□□ -0.84
CD44-228ENST00000528455 U2AF1Q01081 240 aaKnown RBP eCLIP9.8□□□□□ -0.84
CD44-228ENST00000528455 SF3B2Q13435 895 aaKnown RBP9.8□□□□□ -0.84
CD44-228ENST00000528455 GIGYF2Q6Y7W6 1299 aaKnown RBP9.8□□□□□ -0.84
CD44-228ENST00000528455 KDM4CQ9H3R0 1056 aa9.8□□□□□ -0.84
CD44-228ENST00000528455 SPATA31A1Q5TZJ5 1347 aa9.8□□□□□ -0.84
CD44-228ENST00000528455 BRWD3Q6RI45 1802 aa9.79□□□□□ -0.84
CD44-228ENST00000528455 RGPD5Q99666 1765 aa9.79□□□□□ -0.84
CD44-228ENST00000528455 ABCC6O95255 1503 aa9.79□□□□□ -0.84
CD44-228ENST00000528455 ZBTB7CA1YPR0 619 aa9.79□□□□□ -0.84
CD44-228ENST00000528455 U2SURPO15042 1029 aaKnown RBP9.79□□□□□ -0.84
CD44-228ENST00000528455 SWT1Q5T5J6 900 aaKnown RBP9.79□□□□□ -0.84
CD44-228ENST00000528455 NGEFQ8N5V2 710 aa9.79□□□□□ -0.84
CD44-228ENST00000528455 USP35Q9P2H5 1018 aa9.79□□□□□ -0.84
CD44-228ENST00000528455 PEAK1Q9H792 1746 aa9.79□□□□□ -0.84
CD44-228ENST00000528455 COL3A1P02461 1466 aaPredicted RBP9.79□□□□□ -0.84
CD44-228ENST00000528455 SAMD7Q7Z3H4 446 aa9.78□□□□□ -0.84
CD44-228ENST00000528455 ANKRD24Q8TF21 1146 aa9.78□□□□□ -0.84
CD44-228ENST00000528455 RUNDC1Q96C34 613 aa9.78□□□□□ -0.84
CD44-228ENST00000528455 FAM217BQ9NTX9 383 aaPredicted RBP9.78□□□□□ -0.84
CD44-228ENST00000528455 NEFMP07197 916 aa9.77□□□□□ -0.85
CD44-228ENST00000528455 NBPF6Q5VWK0 638 aa9.77□□□□□ -0.85
CD44-228ENST00000528455 LARP1Q6PKG0 1096 aaKnown RBP9.77□□□□□ -0.85
CD44-228ENST00000528455 NBPF4Q96M43 638 aa9.77□□□□□ -0.85
CD44-228ENST00000528455 PLEKHF1Q96S99 279 aa9.77□□□□□ -0.85
CD44-228ENST00000528455 IGSF1Q8N6C5 1336 aa9.77□□□□□ -0.85
CD44-228ENST00000528455 CAMTA1Q9Y6Y1 1673 aa9.77□□□□□ -0.85
CD44-228ENST00000528455 MS4A1P11836 297 aa9.76□□□□□ -0.85
CD44-228ENST00000528455 SSTR3P32745 418 aaPredicted RBP9.76□□□□□ -0.85
CD44-228ENST00000528455 SULT6B1Q6IMI4 303 aa9.76□□□□□ -0.85
CD44-228ENST00000528455 TCP11L2Q8N4U5 519 aa9.76□□□□□ -0.85
CD44-228ENST00000528455 LTV1Q96GA3 475 aaPredicted RBP9.76□□□□□ -0.85
CD44-228ENST00000528455 RSPH6AQ9H0K4 717 aa9.76□□□□□ -0.85
CD44-228ENST00000528455 THRAP3Q9Y2W1 955 aaKnown RBP9.76□□□□□ -0.85
CD44-228ENST00000528455 WDR17Q8IZU2 1322 aa9.76□□□□□ -0.85
CD44-228ENST00000528455 GOLGA8CPA6NN73 597 aa9.75□□□□□ -0.85
CD44-228ENST00000528455 PDE3BQ13370 1112 aa9.75□□□□□ -0.85
CD44-228ENST00000528455 CARD10Q9BWT7 1032 aa9.75□□□□□ -0.85
CD44-228ENST00000528455 KDRP35968 1356 aa9.75□□□□□ -0.85
CD44-228ENST00000528455 LMO7Q8WWI1 1683 aa9.74□□□□□ -0.85
CD44-228ENST00000528455 HMOX1P09601 288 aa9.74□□□□□ -0.85
CD44-228ENST00000528455 CSB-PGBD3P0DP91 1061 aa9.74□□□□□ -0.85
CD44-228ENST00000528455 FAM182BQ5T319 152 aa9.74□□□□□ -0.85
CD44-228ENST00000528455 FAM196AQ6ZSG2 479 aa9.74□□□□□ -0.85
CD44-228ENST00000528455 DEFB132Q7Z7B7 95 aa9.74□□□□□ -0.85
CD44-228ENST00000528455 NLRP2Q9NX02 1062 aa9.74□□□□□ -0.85
CD44-228ENST00000528455 CRB1P82279 1406 aa9.73□□□□□ -0.85
CD44-228ENST00000528455 RGPD1P0DJD0 1748 aa9.73□□□□□ -0.85
CD44-228ENST00000528455 COL5A2P05997 1499 aaPredicted RBP9.73□□□□□ -0.85
CD44-228ENST00000528455 DDX11L8A8MPP1 907 aa9.73□□□□□ -0.85
CD44-228ENST00000528455 SLC10A3P09131 477 aa9.73□□□□□ -0.85
CD44-228ENST00000528455 BAG6P46379 1132 aa9.73□□□□□ -0.85
CD44-228ENST00000528455 TOM1L2Q6ZVM7 507 aa9.73□□□□□ -0.85
CD44-228ENST00000528455 ANKK1Q8NFD2 765 aa9.73□□□□□ -0.85
CD44-228ENST00000528455 WNT2BQ93097 391 aa9.73□□□□□ -0.85
CD44-228ENST00000528455 LRCH3Q96II8 777 aa9.73□□□□□ -0.85
CD44-228ENST00000528455 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.73□□□□□ -0.85
CD44-228ENST00000528455 THSD7AQ9UPZ6 1657 aa9.73□□□□□ -0.85
CD44-228ENST00000528455 RGPD2P0DJD1 1756 aa9.73□□□□□ -0.85
CD44-228ENST00000528455 FAM208AQ9UK61 1670 aaKnown RBP9.72□□□□□ -0.85
CD44-228ENST00000528455 SOWAHBA6NEL2 793 aa9.72□□□□□ -0.85
CD44-228ENST00000528455 APAF1O14727 1248 aa9.72□□□□□ -0.85
CD44-228ENST00000528455 CD46P15529 392 aa9.72□□□□□ -0.85
CD44-228ENST00000528455 PRKAR2BP31323 418 aa9.72□□□□□ -0.85
CD44-228ENST00000528455 TMPOP42166 694 aaKnown RBP9.72□□□□□ -0.85
CD44-228ENST00000528455 CCDC27Q2M243 656 aa9.72□□□□□ -0.85
CD44-228ENST00000528455 AMOTQ4VCS5 1084 aa9.72□□□□□ -0.85
CD44-228ENST00000528455 PLEKHO1Q53GL0 409 aaPredicted RBP9.72□□□□□ -0.85
CD44-228ENST00000528455 SULF1Q8IWU6 871 aa9.72□□□□□ -0.85
CD44-228ENST00000528455 SLF2Q8IX21 1173 aa9.72□□□□□ -0.85
CD44-228ENST00000528455 PHACTR3Q96KR7 559 aa9.72□□□□□ -0.85
CD44-228ENST00000528455 FAM117AQ9C073 453 aa9.72□□□□□ -0.85
CD44-228ENST00000528455 PLEKHG2Q9H7P9 1386 aa9.72□□□□□ -0.85
CD44-228ENST00000528455 NCAPD2Q15021 1401 aa9.72□□□□□ -0.85
CD44-228ENST00000528455 HTATSF1O43719 755 aaKnown RBP9.71□□□□□ -0.86
CD44-228ENST00000528455 HNRNPUQ00839 825 aaKnown RBP eCLIP9.71□□□□□ -0.86
CD44-228ENST00000528455 AEBP1Q8IUX7 1158 aa9.71□□□□□ -0.86
CD44-228ENST00000528455 SPNS2Q8IVW8 549 aa9.71□□□□□ -0.86
CD44-228ENST00000528455 CCDC146Q8IYE0 955 aa9.71□□□□□ -0.86
CD44-228ENST00000528455 RAPGEF4Q8WZA2 1011 aa9.71□□□□□ -0.86
CD44-228ENST00000528455 CDCA7Q9BWT1 371 aaPredicted RBP9.71□□□□□ -0.86
CD44-228ENST00000528455 MAPK8IP3Q9UPT6 1336 aa9.71□□□□□ -0.86
CD44-228ENST00000528455 TRIM37O94972 964 aa9.7□□□□□ -0.86
CD44-228ENST00000528455 TATP17735 454 aaPredicted RBP9.7□□□□□ -0.86
CD44-228ENST00000528455 BCAMP50895 628 aa9.7□□□□□ -0.86
CD44-228ENST00000528455 NFE2L2Q16236 605 aa9.7□□□□□ -0.86
CD44-228ENST00000528455 GAS2L2Q8NHY3 880 aa9.7□□□□□ -0.86
CD44-228ENST00000528455 SRCAPQ6ZRS2 3230 aa9.7□□□□□ -0.86
CD44-228ENST00000528455 IL2RBP14784 551 aa9.69□□□□□ -0.86
CD44-228ENST00000528455 RIPK4P57078 832 aa9.69□□□□□ -0.86
CD44-228ENST00000528455 DDB1Q16531 1140 aa9.69□□□□□ -0.86
CD44-228ENST00000528455 WDR63Q8IWG1 891 aa9.69□□□□□ -0.86
CD44-228ENST00000528455 USHBP1Q8N6Y0 703 aa9.69□□□□□ -0.86
CD44-228ENST00000528455 KCTD12Q96CX2 325 aaKnown RBP9.69□□□□□ -0.86
CD44-228ENST00000528455 BEGAINQ9BUH8 593 aa9.69□□□□□ -0.86
CD44-228ENST00000528455 SPG7Q9UQ90 795 aa9.69□□□□□ -0.86
CD44-228ENST00000528455 ZBED9Q6R2W3 1325 aa9.68□□□□□ -0.86
CD44-228ENST00000528455 RNF40O75150 1001 aa9.68□□□□□ -0.86
CD44-228ENST00000528455 APBA3O96018 575 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms