RNA–Protein interactions for RNA: ENST00000527823.5

USP48-212, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 554 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-212ENST00000527823 USP47Q96K76 1375 aa11.56□□□□□ -0.56
USP48-212ENST00000527823 POTEMA6NI47 508 aa11.56□□□□□ -0.56
USP48-212ENST00000527823 CD2APQ9Y5K6 639 aa11.56□□□□□ -0.56
USP48-212ENST00000527823 ADGRG1Q9Y653 693 aa11.56□□□□□ -0.56
USP48-212ENST00000527823 IGSF1Q8N6C5 1336 aa11.56□□□□□ -0.56
USP48-212ENST00000527823 KIF20BQ96Q89 1820 aa11.56□□□□□ -0.56
USP48-212ENST00000527823 C3orf80F5H4A9 247 aa11.55□□□□□ -0.56
USP48-212ENST00000527823 TRIM66O15016 1216 aa11.55□□□□□ -0.56
USP48-212ENST00000527823 AMIGO3Q86WK7 504 aa11.55□□□□□ -0.56
USP48-212ENST00000527823 KIAA1468Q9P260 1216 aa11.55□□□□□ -0.56
USP48-212ENST00000527823 WWC3Q9ULE0 1092 aa11.55□□□□□ -0.56
USP48-212ENST00000527823 PALLDQ8WX93 1383 aa11.54□□□□□ -0.56
USP48-212ENST00000527823 PACS2Q86VP3 889 aa11.54□□□□□ -0.56
USP48-212ENST00000527823 IP6K1Q92551 441 aa11.54□□□□□ -0.56
USP48-212ENST00000527823 LTV1Q96GA3 475 aaPredicted RBP11.54□□□□□ -0.56
USP48-212ENST00000527823 VPS9D1Q9Y2B5 631 aa11.54□□□□□ -0.56
USP48-212ENST00000527823 ARFGEF1Q9Y6D6 1849 aa11.53□□□□□ -0.56
USP48-212ENST00000527823 PXDNLA1KZ92 1463 aa11.53□□□□□ -0.56
USP48-212ENST00000527823 C4AP0C0L4 1744 aa11.53□□□□□ -0.56
USP48-212ENST00000527823 LSM11P83369 360 aaKnown RBP eCLIP11.53□□□□□ -0.56
USP48-212ENST00000527823 L3MBTL2Q969R5 705 aa11.53□□□□□ -0.56
USP48-212ENST00000527823 MAP3K19Q56UN5 1328 aa11.53□□□□□ -0.56
USP48-212ENST00000527823 RTL1A6NKG5 1358 aa11.53□□□□□ -0.56
USP48-212ENST00000527823 ANKRD26Q9UPS8 1709 aa11.52□□□□□ -0.56
USP48-212ENST00000527823 SMAPO00193 183 aa11.52□□□□□ -0.57
USP48-212ENST00000527823 NUDT18Q6ZVK8 323 aa11.52□□□□□ -0.57
USP48-212ENST00000527823 PHOX2BQ99453 314 aa11.52□□□□□ -0.57
USP48-212ENST00000527823 SLC4A5Q9BY07 1137 aa11.52□□□□□ -0.57
USP48-212ENST00000527823 COL5A3P25940 1745 aaPredicted RBP11.52□□□□□ -0.57
USP48-212ENST00000527823 OATP04181 439 aa11.51□□□□□ -0.57
USP48-212ENST00000527823 HOXC9P31274 260 aa11.51□□□□□ -0.57
USP48-212ENST00000527823 ANKRD13DQ6ZTN6 518 aa11.51□□□□□ -0.57
USP48-212ENST00000527823 TATDN2Q93075 761 aa11.51□□□□□ -0.57
USP48-212ENST00000527823 PNMA3Q9UL41 463 aa11.51□□□□□ -0.57
USP48-212ENST00000527823 TNRC6CQ9HCJ0 1690 aaKnown RBP11.51□□□□□ -0.57
USP48-212ENST00000527823 APLP1P51693 650 aa11.5□□□□□ -0.57
USP48-212ENST00000527823 METTL3Q86U44 580 aaKnown RBP11.5□□□□□ -0.57
USP48-212ENST00000527823 ZCRB1Q8TBF4 217 aaKnown RBP11.5□□□□□ -0.57
USP48-212ENST00000527823 NLRP7Q8WX94 980 aa11.5□□□□□ -0.57
USP48-212ENST00000527823 C10orf71Q711Q0 1435 aa11.5□□□□□ -0.57
USP48-212ENST00000527823 NSD3Q9BZ95 1437 aa11.5□□□□□ -0.57
USP48-212ENST00000527823 NBPF26B4DH59 902 aa11.49□□□□□ -0.57
USP48-212ENST00000527823 SMIM5Q71RC9 77 aa11.49□□□□□ -0.57
USP48-212ENST00000527823 HDGFL2Q7Z4V5 671 aaPredicted RBP11.49□□□□□ -0.57
USP48-212ENST00000527823 DNAJC5GQ8N7S2 189 aa11.49□□□□□ -0.57
USP48-212ENST00000527823 RBM46Q8TBY0 533 aaKnown RBP11.49□□□□□ -0.57
USP48-212ENST00000527823 PXYLP1Q8TE99 480 aa11.49□□□□□ -0.57
USP48-212ENST00000527823 KRTAP3-3Q9BYR6 98 aa11.49□□□□□ -0.57
USP48-212ENST00000527823 KRTAP3-2Q9BYR7 98 aa11.49□□□□□ -0.57
USP48-212ENST00000527823 SLC12A5Q9H2X9 1139 aa11.49□□□□□ -0.57
USP48-212ENST00000527823 RABGEF1Q9UJ41 708 aa11.49□□□□□ -0.57
USP48-212ENST00000527823 PDE4DQ08499 809 aa11.48□□□□□ -0.57
USP48-212ENST00000527823 ADGRD1Q6QNK2 874 aa11.48□□□□□ -0.57
USP48-212ENST00000527823 CDAN1Q8IWY9 1227 aa11.48□□□□□ -0.57
USP48-212ENST00000527823 USHBP1Q8N6Y0 703 aa11.48□□□□□ -0.57
USP48-212ENST00000527823 TMC1Q8TDI8 760 aa11.48□□□□□ -0.57
USP48-212ENST00000527823 EYA1Q99502 592 aa11.48□□□□□ -0.57
USP48-212ENST00000527823 SEPT9Q9UHD8 586 aaPredicted RBP11.48□□□□□ -0.57
USP48-212ENST00000527823 ZNF831Q5JPB2 1677 aa11.47□□□□□ -0.57
USP48-212ENST00000527823 NCAPD2Q15021 1401 aa11.47□□□□□ -0.57
USP48-212ENST00000527823 SMG6Q86US8 1419 aaKnown RBP11.47□□□□□ -0.57
USP48-212ENST00000527823 PCDH11XQ9BZA7 1347 aa11.47□□□□□ -0.57
USP48-212ENST00000527823 PCDH11YQ9BZA8 1340 aa11.47□□□□□ -0.57
USP48-212ENST00000527823 TK2O00142 265 aa11.47□□□□□ -0.57
USP48-212ENST00000527823 FBLN1P23142 703 aa11.47□□□□□ -0.57
USP48-212ENST00000527823 FLAD1Q8NFF5 587 aa11.47□□□□□ -0.57
USP48-212ENST00000527823 CGNL1Q0VF96 1302 aa11.46□□□□□ -0.57
USP48-212ENST00000527823 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.46□□□□□ -0.57
USP48-212ENST00000527823 NEUROD2Q15784 382 aa11.46□□□□□ -0.57
USP48-212ENST00000527823 NBPF6Q5VWK0 638 aa11.46□□□□□ -0.57
USP48-212ENST00000527823 NBPF4Q96M43 638 aa11.46□□□□□ -0.57
USP48-212ENST00000527823 SBF1O95248 1867 aa11.46□□□□□ -0.58
USP48-212ENST00000527823 TOMM70O94826 608 aa11.45□□□□□ -0.58
USP48-212ENST00000527823 BRPF1P55201 1214 aaPredicted RBP11.45□□□□□ -0.58
USP48-212ENST00000527823 AMHR2Q16671 573 aa11.45□□□□□ -0.58
USP48-212ENST00000527823 COL13A1Q5TAT6 717 aaPredicted RBP11.45□□□□□ -0.58
USP48-212ENST00000527823 NMRK2Q9NPI5 230 aa11.45□□□□□ -0.58
USP48-212ENST00000527823 TIAM2Q8IVF5 1701 aa11.45□□□□□ -0.58
USP48-212ENST00000527823 KCPQ6ZWJ8 1503 aa11.45□□□□□ -0.58
USP48-212ENST00000527823 RCCD1A6NED2 376 aa11.44□□□□□ -0.58
USP48-212ENST00000527823 AMPHP49418 695 aa11.44□□□□□ -0.58
USP48-212ENST00000527823 HTRA3P83110 453 aa11.44□□□□□ -0.58
USP48-212ENST00000527823 MDM2Q00987 491 aaPredicted RBP11.44□□□□□ -0.58
USP48-212ENST00000527823 LINC00116Q8NCU8 138 aa11.44□□□□□ -0.58
USP48-212ENST00000527823 TERF2IPQ9NYB0 399 aa11.44□□□□□ -0.58
USP48-212ENST00000527823 KDRP35968 1356 aa11.43□□□□□ -0.58
USP48-212ENST00000527823 BHMG1C9JSJ3 638 aaPredicted RBP11.43□□□□□ -0.58
USP48-212ENST00000527823 CYP27B1O15528 508 aa11.43□□□□□ -0.58
USP48-212ENST00000527823 SSFA2P28290 1259 aa11.43□□□□□ -0.58
USP48-212ENST00000527823 TTLL12Q14166 644 aaPredicted RBP11.43□□□□□ -0.58
USP48-212ENST00000527823 RRS1Q15050 365 aaKnown RBP11.43□□□□□ -0.58
USP48-212ENST00000527823 MPRIPQ6WCQ1 1025 aa11.43□□□□□ -0.58
USP48-212ENST00000527823 COG3Q96JB2 828 aa11.43□□□□□ -0.58
USP48-212ENST00000527823 SIN3AQ96ST3 1273 aa11.43□□□□□ -0.58
USP48-212ENST00000527823 MYH14Q7Z406 1995 aaKnown RBP11.43□□□□□ -0.58
USP48-212ENST00000527823 PLEKHG2Q9H7P9 1386 aa11.42□□□□□ -0.58
USP48-212ENST00000527823 DLEC1Q9Y238 1755 aa11.42□□□□□ -0.58
USP48-212ENST00000527823 JMYQ8N9B5 988 aa11.42□□□□□ -0.58
USP48-212ENST00000527823 RAPGEF4Q8WZA2 1011 aa11.42□□□□□ -0.58
USP48-212ENST00000527823 KLRG1Q96E93 195 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms