RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 KIF6Q6ZMV9 814 aa17.53■□□□□ 0.4
CD44-224ENST00000526669 FRAT1Q92837 279 aaPredicted RBP17.53■□□□□ 0.4
CD44-224ENST00000526669 PDGFDQ9GZP0 370 aaPredicted RBP17.53■□□□□ 0.4
CD44-224ENST00000526669 A0A087WZG4 1122 aa17.52■□□□□ 0.4
CD44-224ENST00000526669 RFC4P35249 363 aa17.52■□□□□ 0.4
CD44-224ENST00000526669 FKBP5Q13451 457 aaPredicted RBP17.52■□□□□ 0.4
CD44-224ENST00000526669 NOB1Q9ULX3 412 aaKnown RBP17.52■□□□□ 0.4
CD44-224ENST00000526669 CAMTA2O94983 1202 aa17.51■□□□□ 0.39
CD44-224ENST00000526669 ADRA2BP18089 450 aa17.51■□□□□ 0.39
CD44-224ENST00000526669 USPL1Q5W0Q7 1092 aa17.51■□□□□ 0.39
CD44-224ENST00000526669 TNNQ9UQP3 1299 aa17.51■□□□□ 0.39
CD44-224ENST00000526669 ADCY9O60503 1353 aa17.51■□□□□ 0.39
CD44-224ENST00000526669 MAP3K15Q6ZN16 1313 aa17.5■□□□□ 0.39
CD44-224ENST00000526669 USP42Q9H9J4 1324 aaKnown RBP17.5■□□□□ 0.39
CD44-224ENST00000526669 COL24A1Q17RW2 1714 aa17.5■□□□□ 0.39
CD44-224ENST00000526669 F6X3S4 739 aa17.5■□□□□ 0.39
CD44-224ENST00000526669 ZPR1O75312 459 aa17.5■□□□□ 0.39
CD44-224ENST00000526669 HLFQ16534 295 aa17.5■□□□□ 0.39
CD44-224ENST00000526669 RIC3Q7Z5B4 369 aa17.5■□□□□ 0.39
CD44-224ENST00000526669 FLAD1Q8NFF5 587 aa17.5■□□□□ 0.39
CD44-224ENST00000526669 NARFQ9UHQ1 456 aa17.5■□□□□ 0.39
CD44-224ENST00000526669 KIF16BQ96L93 1317 aa17.49■□□□□ 0.39
CD44-224ENST00000526669 PLIN1O60240 522 aa17.49■□□□□ 0.39
CD44-224ENST00000526669 ANKRD13DQ6ZTN6 518 aa17.49■□□□□ 0.39
CD44-224ENST00000526669 PI4KAP2A4QPH2 592 aa17.48■□□□□ 0.39
CD44-224ENST00000526669 DDX58O95786 925 aaKnown RBP17.48■□□□□ 0.39
CD44-224ENST00000526669 CENPBP07199 599 aaPredicted RBP17.48■□□□□ 0.39
CD44-224ENST00000526669 MSL1Q68DK7 614 aa17.48■□□□□ 0.39
CD44-224ENST00000526669 PI4KAP1Q8N8J0 262 aa17.48■□□□□ 0.39
CD44-224ENST00000526669 BCL2L12Q9HB09 334 aa17.48■□□□□ 0.39
CD44-224ENST00000526669 MAP3K2Q9Y2U5 619 aa17.48■□□□□ 0.39
CD44-224ENST00000526669 MYH3P11055 1940 aa17.48■□□□□ 0.39
CD44-224ENST00000526669 BRPF1P55201 1214 aaPredicted RBP17.47■□□□□ 0.39
CD44-224ENST00000526669 KSR2Q6VAB6 950 aa17.47■□□□□ 0.39
CD44-224ENST00000526669 PLBD2Q8NHP8 589 aa17.47■□□□□ 0.39
CD44-224ENST00000526669 PTPRCP08575 1304 aa17.47■□□□□ 0.39
CD44-224ENST00000526669 GYS1P13807 737 aa17.46■□□□□ 0.39
CD44-224ENST00000526669 FKBP8Q14318 412 aa17.46■□□□□ 0.39
CD44-224ENST00000526669 SLC4A10Q6U841 1118 aa17.46■□□□□ 0.39
CD44-224ENST00000526669 BICDL1Q6ZP65 573 aa17.46■□□□□ 0.39
CD44-224ENST00000526669 MYD88Q99836 296 aa17.46■□□□□ 0.39
CD44-224ENST00000526669 GPTP24298 496 aa17.45■□□□□ 0.38
CD44-224ENST00000526669 ZKSCAN2Q63HK3 967 aa17.45■□□□□ 0.38
CD44-224ENST00000526669 GIGYF2Q6Y7W6 1299 aaKnown RBP17.45■□□□□ 0.38
CD44-224ENST00000526669 DNAAF4Q8WXU2 420 aa17.45■□□□□ 0.38
CD44-224ENST00000526669 CLUAP1Q96AJ1 413 aa17.45■□□□□ 0.38
CD44-224ENST00000526669 LAMB2P55268 1798 aa17.45■□□□□ 0.38
CD44-224ENST00000526669 ERVV-1B6SEH8 477 aa17.44■□□□□ 0.38
CD44-224ENST00000526669 ATP5J2-PTCD1G3V325 749 aa17.44■□□□□ 0.38
CD44-224ENST00000526669 ZBTB7AO95365 584 aa17.44■□□□□ 0.38
CD44-224ENST00000526669 TRIM27P14373 513 aa17.44■□□□□ 0.38
CD44-224ENST00000526669 TBC1D9BQ66K14 1250 aa17.44■□□□□ 0.38
CD44-224ENST00000526669 ATF7IPQ6VMQ6 1270 aa17.44■□□□□ 0.38
CD44-224ENST00000526669 API5Q9BZZ5 524 aaKnown RBP17.44■□□□□ 0.38
CD44-224ENST00000526669 ZNF652Q9Y2D9 606 aa17.44■□□□□ 0.38
CD44-224ENST00000526669 SUPT16HQ9Y5B9 1047 aaKnown RBP17.44■□□□□ 0.38
CD44-224ENST00000526669 FAM177BA6PVY3 158 aa17.43■□□□□ 0.38
CD44-224ENST00000526669 IPO8O15397 1037 aaKnown RBP17.43■□□□□ 0.38
CD44-224ENST00000526669 RRP1P56182 461 aaKnown RBP17.43■□□□□ 0.38
CD44-224ENST00000526669 METTL22Q9BUU2 404 aaPredicted RBP17.43■□□□□ 0.38
CD44-224ENST00000526669 DDX60Q8IY21 1712 aaKnown RBP17.43■□□□□ 0.38
CD44-224ENST00000526669 CACNA1SQ13698 1873 aa17.43■□□□□ 0.38
CD44-224ENST00000526669 ANKRD31Q8N7Z5 1873 aa17.43■□□□□ 0.38
CD44-224ENST00000526669 PXDNLA1KZ92 1463 aa17.43■□□□□ 0.38
CD44-224ENST00000526669 NRXN2Q9P2S2 1712 aa17.42■□□□□ 0.38
CD44-224ENST00000526669 ATP10DQ9P241 1426 aa17.42■□□□□ 0.38
CD44-224ENST00000526669 TCIRG1Q13488 830 aa17.42■□□□□ 0.38
CD44-224ENST00000526669 NIP7Q9Y221 180 aaKnown RBP eCLIP17.42■□□□□ 0.38
CD44-224ENST00000526669 RLBP1P12271 317 aa17.41■□□□□ 0.38
CD44-224ENST00000526669 CWF19L2Q2TBE0 894 aaKnown RBP17.41■□□□□ 0.38
CD44-224ENST00000526669 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.41■□□□□ 0.38
CD44-224ENST00000526669 PANK1Q8TE04 598 aa17.41■□□□□ 0.38
CD44-224ENST00000526669 ARHGAP45Q92619 1136 aa17.41■□□□□ 0.38
CD44-224ENST00000526669 ATF5Q9Y2D1 282 aaPredicted RBP17.41■□□□□ 0.38
CD44-224ENST00000526669 ABCC4O15439 1325 aa17.41■□□□□ 0.38
CD44-224ENST00000526669 UBN2Q6ZU65 1347 aa17.41■□□□□ 0.38
CD44-224ENST00000526669 IGKV5-2P06315 115 aa17.4■□□□□ 0.38
CD44-224ENST00000526669 NEXNQ0ZGT2 675 aa17.4■□□□□ 0.38
CD44-224ENST00000526669 NFIXQ14938 502 aa17.4■□□□□ 0.38
CD44-224ENST00000526669 HSP90AB3PQ58FF7 597 aa17.4■□□□□ 0.38
CD44-224ENST00000526669 C20orf194Q5TEA3 1177 aa17.4■□□□□ 0.38
CD44-224ENST00000526669 CLEC4GQ6UXB4 293 aa17.4■□□□□ 0.38
CD44-224ENST00000526669 FTSJ3Q8IY81 847 aaKnown RBP17.4■□□□□ 0.38
CD44-224ENST00000526669 BEND3Q5T5X7 828 aa17.39■□□□□ 0.37
CD44-224ENST00000526669 DZIP1LQ8IYY4 767 aaKnown RBP17.39■□□□□ 0.37
CD44-224ENST00000526669 ZNF34Q8IZ26 560 aa17.39■□□□□ 0.37
CD44-224ENST00000526669 TMEM57Q8N5G2 664 aa17.39■□□□□ 0.37
CD44-224ENST00000526669 SLC16A10Q8TF71 515 aa17.39■□□□□ 0.37
CD44-224ENST00000526669 ISCA1Q9BUE6 129 aa17.39■□□□□ 0.37
CD44-224ENST00000526669 TAF1P21675 1872 aa17.39■□□□□ 0.37
CD44-224ENST00000526669 SPEF2Q9C093 1822 aa17.38■□□□□ 0.37
CD44-224ENST00000526669 DDR1Q08345 913 aa17.38■□□□□ 0.37
CD44-224ENST00000526669 NLGN1Q8N2Q7 840 aa17.38■□□□□ 0.37
CD44-224ENST00000526669 JARID2Q92833 1246 aaPredicted RBP17.38■□□□□ 0.37
CD44-224ENST00000526669 SETDB2Q96T68 719 aa17.38■□□□□ 0.37
CD44-224ENST00000526669 SRCIN1Q9C0H9 1055 aa17.38■□□□□ 0.37
CD44-224ENST00000526669 TNRC6CQ9HCJ0 1690 aaKnown RBP17.38■□□□□ 0.37
CD44-224ENST00000526669 NEURL1BA8MQ27 555 aa17.37■□□□□ 0.37
CD44-224ENST00000526669 MMP10P09238 476 aa17.37■□□□□ 0.37
CD44-224ENST00000526669 TM4SF1P30408 202 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms