RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 ALDH16A1Q8IZ83 802 aa8.25□□□□□ -1.09
CD44-217ENST00000525348 RHPN1Q8TCX5 695 aa8.25□□□□□ -1.09
CD44-217ENST00000525348 HSH2DQ96JZ2 352 aa8.25□□□□□ -1.09
CD44-217ENST00000525348 SLAIN2Q9P270 581 aa8.25□□□□□ -1.09
CD44-217ENST00000525348 STK17AQ9UEE5 414 aa8.25□□□□□ -1.09
CD44-217ENST00000525348 ATXN7L1Q9ULK2 861 aaPredicted RBP8.25□□□□□ -1.09
CD44-217ENST00000525348 ACIN1Q9UKV3 1341 aaKnown RBP8.25□□□□□ -1.09
CD44-217ENST00000525348 FGFR3P22607 806 aa8.24□□□□□ -1.09
CD44-217ENST00000525348 CTBSQ01459 385 aa8.24□□□□□ -1.09
CD44-217ENST00000525348 TNP2Q05952 138 aa8.24□□□□□ -1.09
CD44-217ENST00000525348 FIGNL1Q6PIW4 674 aa8.24□□□□□ -1.09
CD44-217ENST00000525348 ZNF280CQ8ND82 737 aa8.24□□□□□ -1.09
CD44-217ENST00000525348 NGLY1Q96IV0 654 aa8.24□□□□□ -1.09
CD44-217ENST00000525348 PRIMPOLQ96LW4 560 aa8.24□□□□□ -1.09
CD44-217ENST00000525348 STRN4Q9NRL3 753 aa8.24□□□□□ -1.09
CD44-217ENST00000525348 MAPTP10636 758 aaKnown RBP8.23□□□□□ -1.09
CD44-217ENST00000525348 OCLNQ16625 522 aa8.23□□□□□ -1.09
CD44-217ENST00000525348 SAMD5Q5TGI4 173 aa8.23□□□□□ -1.09
CD44-217ENST00000525348 ACDQ96AP0 544 aa8.23□□□□□ -1.09
CD44-217ENST00000525348 PHF24Q9UPV7 400 aa8.23□□□□□ -1.09
CD44-217ENST00000525348 CHMP3Q9Y3E7 222 aa8.23□□□□□ -1.09
CD44-217ENST00000525348 EFSO43281 561 aa8.22□□□□□ -1.09
CD44-217ENST00000525348 PRMT3O60678 531 aa8.22□□□□□ -1.09
CD44-217ENST00000525348 ARHGEF15O94989 841 aa8.22□□□□□ -1.09
CD44-217ENST00000525348 CELA2BP08218 269 aaPredicted RBP8.22□□□□□ -1.09
CD44-217ENST00000525348 FAM157BP0CG42 384 aa8.22□□□□□ -1.09
CD44-217ENST00000525348 GRIN2CQ14957 1233 aa8.22□□□□□ -1.09
CD44-217ENST00000525348 SWI5Q1ZZU3 235 aa8.22□□□□□ -1.09
CD44-217ENST00000525348 GPC6Q9Y625 555 aaPredicted RBP8.22□□□□□ -1.09
CD44-217ENST00000525348 GJA3Q9Y6H8 435 aa8.22□□□□□ -1.09
CD44-217ENST00000525348 KHNYNO15037 678 aaKnown RBP8.21□□□□□ -1.1
CD44-217ENST00000525348 CD33P20138 364 aa8.21□□□□□ -1.1
CD44-217ENST00000525348 FKBP5Q13451 457 aaPredicted RBP8.21□□□□□ -1.1
CD44-217ENST00000525348 SUSD3Q96L08 255 aa8.21□□□□□ -1.1
CD44-217ENST00000525348 FOXO3O43524 673 aa8.2□□□□□ -1.1
CD44-217ENST00000525348 SVOPQ8N4V2 548 aa8.2□□□□□ -1.1
CD44-217ENST00000525348 QTRT2Q9H974 415 aaKnown RBP8.2□□□□□ -1.1
CD44-217ENST00000525348 BCS1LQ9Y276 419 aa8.2□□□□□ -1.1
CD44-217ENST00000525348 BMP4P12644 408 aa8.19□□□□□ -1.1
CD44-217ENST00000525348 MAP2K3P46734 347 aa8.19□□□□□ -1.1
CD44-217ENST00000525348 RTN1Q16799 776 aa8.19□□□□□ -1.1
CD44-217ENST00000525348 C1orf229Q6ZS94 237 aaPredicted RBP8.19□□□□□ -1.1
CD44-217ENST00000525348 TYRO3Q06418 890 aa8.18□□□□□ -1.1
CD44-217ENST00000525348 SFSWAPQ12872 951 aaKnown RBP8.18□□□□□ -1.1
CD44-217ENST00000525348 CAPN12Q6ZSI9 719 aa8.18□□□□□ -1.1
CD44-217ENST00000525348 ERICH6Q7L0X2 663 aa8.18□□□□□ -1.1
CD44-217ENST00000525348 CLP1Q92989 425 aaKnown RBP8.18□□□□□ -1.1
CD44-217ENST00000525348 FAM182BQ5T319 152 aa8.17□□□□□ -1.1
CD44-217ENST00000525348 OXCT2Q9BYC2 517 aaPredicted RBP8.17□□□□□ -1.1
CD44-217ENST00000525348 NEUROD4Q9HD90 331 aa8.17□□□□□ -1.1
CD44-217ENST00000525348 KLK14Q9P0G3 267 aa8.17□□□□□ -1.1
CD44-217ENST00000525348 CXXC1Q9P0U4 656 aaPredicted RBP8.17□□□□□ -1.1
CD44-217ENST00000525348 KLF15Q9UIH9 416 aa8.17□□□□□ -1.1
CD44-217ENST00000525348 NSFL1CQ9UNZ2 370 aaKnown RBP8.17□□□□□ -1.1
CD44-217ENST00000525348 ADAMTS8Q9UP79 889 aa8.17□□□□□ -1.1
CD44-217ENST00000525348 TMEM88BA6NKF7 163 aa8.16□□□□□ -1.1
CD44-217ENST00000525348 BCRP11274 1271 aa8.16□□□□□ -1.1
CD44-217ENST00000525348 ARID3AQ99856 593 aa8.16□□□□□ -1.1
CD44-217ENST00000525348 MARK1Q9P0L2 795 aa8.16□□□□□ -1.1
CD44-217ENST00000525348 DMGDHQ9UI17 866 aaKnown RBP8.16□□□□□ -1.1
CD44-217ENST00000525348 LRFN2Q9ULH4 789 aa8.16□□□□□ -1.1
CD44-217ENST00000525348 CARNS1A5YM72 827 aa8.15□□□□□ -1.1
CD44-217ENST00000525348 PPP1R15AO75807 674 aaPredicted RBP8.15□□□□□ -1.1
CD44-217ENST00000525348 LAMC2Q13753 1193 aa8.15□□□□□ -1.1
CD44-217ENST00000525348 BTLAQ7Z6A9 289 aa8.15□□□□□ -1.1
CD44-217ENST00000525348 MYO19Q96H55 970 aa8.15□□□□□ -1.1
CD44-217ENST00000525348 CEP63Q96MT8 703 aa8.15□□□□□ -1.1
CD44-217ENST00000525348 BRD7Q9NPI1 651 aa8.15□□□□□ -1.1
CD44-217ENST00000525348 FAM181BA6NEQ2 426 aa8.14□□□□□ -1.11
CD44-217ENST00000525348 SHISA8B8ZZ34 492 aa8.14□□□□□ -1.11
CD44-217ENST00000525348 OIP5O43482 229 aa8.14□□□□□ -1.11
CD44-217ENST00000525348 GRNP28799 593 aaKnown RBP8.14□□□□□ -1.11
CD44-217ENST00000525348 DGKZQ13574 1117 aa8.14□□□□□ -1.11
CD44-217ENST00000525348 VTI1AQ96AJ9 217 aa8.14□□□□□ -1.11
CD44-217ENST00000525348 SLC30A3Q99726 388 aa8.14□□□□□ -1.11
CD44-217ENST00000525348 MKNK1Q9BUB5 465 aa8.14□□□□□ -1.11
CD44-217ENST00000525348 SAP130Q9H0E3 1048 aa8.14□□□□□ -1.11
CD44-217ENST00000525348 ANKIB1Q9P2G1 1089 aa8.14□□□□□ -1.11
CD44-217ENST00000525348 GGA1Q9UJY5 639 aa8.14□□□□□ -1.11
CD44-217ENST00000525348 TGFBR3LH3BV60 316 aa8.13□□□□□ -1.11
CD44-217ENST00000525348 ARAFP10398 606 aa8.13□□□□□ -1.11
CD44-217ENST00000525348 MAP3K10Q02779 954 aa8.13□□□□□ -1.11
CD44-217ENST00000525348 COX20Q5RI15 118 aa8.13□□□□□ -1.11
CD44-217ENST00000525348 IER5Q5VY09 327 aa8.13□□□□□ -1.11
CD44-217ENST00000525348 NEURL1BA8MQ27 555 aa8.12□□□□□ -1.11
CD44-217ENST00000525348 ATP2B4P23634 1241 aa8.12□□□□□ -1.11
CD44-217ENST00000525348 SCNN1AP37088 669 aa8.12□□□□□ -1.11
CD44-217ENST00000525348 KCNQ4P56696 695 aa8.12□□□□□ -1.11
CD44-217ENST00000525348 PCBP4P57723 403 aaKnown RBP8.12□□□□□ -1.11
CD44-217ENST00000525348 FAM26DQ5JW98 314 aa8.12□□□□□ -1.11
CD44-217ENST00000525348 SLCO4C1Q6ZQN7 724 aa8.12□□□□□ -1.11
CD44-217ENST00000525348 GDF2Q9UK05 429 aaPredicted RBP8.12□□□□□ -1.11
CD44-217ENST00000525348 ZNF468Q5VIY5 522 aaPredicted RBP8.11□□□□□ -1.11
CD44-217ENST00000525348 RAB44Q7Z6P3 723 aaPredicted RBP8.11□□□□□ -1.11
CD44-217ENST00000525348 FCHSD1Q86WN1 690 aa8.11□□□□□ -1.11
CD44-217ENST00000525348 GOLGA6L1Q8N7Z2 621 aa8.11□□□□□ -1.11
CD44-217ENST00000525348 GALNT6Q8NCL4 622 aa8.11□□□□□ -1.11
CD44-217ENST00000525348 DNMT3AQ9Y6K1 912 aaPredicted RBP8.11□□□□□ -1.11
CD44-217ENST00000525348 TNFRSF10BO14763 440 aa8.1□□□□□ -1.11
CD44-217ENST00000525348 GSK3AP49840 483 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 178.7 ms