RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 SPDYE4A6NLX3 237 aa3.91□□□□□ -1.78
MCF2-208ENST00000519895 CYP4F22Q6NT55 531 aa3.91□□□□□ -1.78
MCF2-208ENST00000519895 UBR3Q6ZT12 1888 aa3.91□□□□□ -1.78
MCF2-208ENST00000519895 HTATIP2Q9BUP3 242 aa3.91□□□□□ -1.78
MCF2-208ENST00000519895 POTEFA5A3E0 1075 aa3.91□□□□□ -1.78
MCF2-208ENST00000519895 ECM2O94769 699 aaPredicted RBP3.91□□□□□ -1.78
MCF2-208ENST00000519895 TOGARAM1Q9Y4F4 1720 aa3.91□□□□□ -1.78
MCF2-208ENST00000519895 NPM2Q86SE8 214 aaKnown RBP3.9□□□□□ -1.78
MCF2-208ENST00000519895 CCER1Q8TC90 406 aaPredicted RBP3.9□□□□□ -1.78
MCF2-208ENST00000519895 FAM163AQ96GL9 167 aaPredicted RBP3.9□□□□□ -1.78
MCF2-208ENST00000519895 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP3.9□□□□□ -1.78
MCF2-208ENST00000519895 COL4A3Q01955 1670 aa3.9□□□□□ -1.78
MCF2-208ENST00000519895 COL5A2P05997 1499 aaPredicted RBP3.9□□□□□ -1.78
MCF2-208ENST00000519895 COL15A1P39059 1388 aa3.9□□□□□ -1.79
MCF2-208ENST00000519895 PRRX2Q99811 253 aa3.9□□□□□ -1.79
MCF2-208ENST00000519895 TAF1DQ9H5J8 278 aaPredicted RBP3.9□□□□□ -1.79
MCF2-208ENST00000519895 TRIOBPQ9H2D6 2365 aa3.9□□□□□ -1.79
MCF2-208ENST00000519895 ST20-MTHFSA0A0A6YYL1 179 aa3.9□□□□□ -1.79
MCF2-208ENST00000519895 AOC2O75106 756 aa3.9□□□□□ -1.79
MCF2-208ENST00000519895 ST3GAL2Q16842 350 aa3.9□□□□□ -1.79
MCF2-208ENST00000519895 CIAPIN1Q6FI81 312 aa3.9□□□□□ -1.79
MCF2-208ENST00000519895 ARHGEF25Q86VW2 580 aa3.9□□□□□ -1.79
MCF2-208ENST00000519895 MARCH10Q8NA82 808 aaPredicted RBP3.9□□□□□ -1.79
MCF2-208ENST00000519895 PCGF6Q9BYE7 350 aa3.9□□□□□ -1.79
MCF2-208ENST00000519895 LTBP3Q9NS15 1303 aa3.89□□□□□ -1.79
MCF2-208ENST00000519895 UHRF1Q96T88 793 aaPredicted RBP3.89□□□□□ -1.79
MCF2-208ENST00000519895 RNF186Q9NXI6 227 aa3.89□□□□□ -1.79
MCF2-208ENST00000519895 PIM2Q9P1W9 311 aa3.89□□□□□ -1.79
MCF2-208ENST00000519895 COL3A1P02461 1466 aaPredicted RBP3.89□□□□□ -1.79
MCF2-208ENST00000519895 COL4A5P29400 1685 aa3.89□□□□□ -1.79
MCF2-208ENST00000519895 MINK1Q8N4C8 1332 aaPredicted RBP3.89□□□□□ -1.79
MCF2-208ENST00000519895 TJP1Q07157 1748 aa3.89□□□□□ -1.79
MCF2-208ENST00000519895 HSPA5P11021 654 aaKnown RBP3.89□□□□□ -1.79
MCF2-208ENST00000519895 LCE2DQ5TA82 110 aaPredicted RBP3.89□□□□□ -1.79
MCF2-208ENST00000519895 PRDM11Q9NQV5 511 aa3.89□□□□□ -1.79
MCF2-208ENST00000519895 MRC1P22897 1456 aa3.89□□□□□ -1.79
MCF2-208ENST00000519895 FER1L6Q2WGJ9 1857 aa3.89□□□□□ -1.79
MCF2-208ENST00000519895 FLT4P35916 1363 aa3.89□□□□□ -1.79
MCF2-208ENST00000519895 PER1O15534 1290 aaPredicted RBP3.88□□□□□ -1.79
MCF2-208ENST00000519895 NEUROD1Q13562 356 aa3.88□□□□□ -1.79
MCF2-208ENST00000519895 DALRD3Q5D0E6 543 aaKnown RBP3.88□□□□□ -1.79
MCF2-208ENST00000519895 PTF1AQ7RTS3 328 aa3.88□□□□□ -1.79
MCF2-208ENST00000519895 SPNS2Q8IVW8 549 aa3.88□□□□□ -1.79
MCF2-208ENST00000519895 CNTROBQ8N137 903 aa3.88□□□□□ -1.79
MCF2-208ENST00000519895 NGEFQ8N5V2 710 aa3.88□□□□□ -1.79
MCF2-208ENST00000519895 SERBP1Q8NC51 408 aaKnown RBP eCLIP3.88□□□□□ -1.79
MCF2-208ENST00000519895 NGDNQ8NEJ9 315 aaKnown RBP3.88□□□□□ -1.79
MCF2-208ENST00000519895 ADAMTS19Q8TE59 1207 aa3.88□□□□□ -1.79
MCF2-208ENST00000519895 IP6K1Q92551 441 aa3.88□□□□□ -1.79
MCF2-208ENST00000519895 CARD10Q9BWT7 1032 aa3.88□□□□□ -1.79
MCF2-208ENST00000519895 IRF2BPLQ9H1B7 796 aa3.88□□□□□ -1.79
MCF2-208ENST00000519895 STK26Q9P289 416 aa3.88□□□□□ -1.79
MCF2-208ENST00000519895 COL5A3P25940 1745 aaPredicted RBP3.88□□□□□ -1.79
MCF2-208ENST00000519895 KDRP35968 1356 aa3.88□□□□□ -1.79
MCF2-208ENST00000519895 SRPK2P78362 688 aaKnown RBP3.88□□□□□ -1.79
MCF2-208ENST00000519895 SPOCK2Q92563 424 aa3.88□□□□□ -1.79
MCF2-208ENST00000519895 ASB2Q96Q27 587 aa3.88□□□□□ -1.79
MCF2-208ENST00000519895 LAMB1P07942 1786 aa3.88□□□□□ -1.79
MCF2-208ENST00000519895 BCORQ6W2J9 1755 aa3.88□□□□□ -1.79
MCF2-208ENST00000519895 WDR17Q8IZU2 1322 aa3.88□□□□□ -1.79
MCF2-208ENST00000519895 CABP1Q9NZU7 370 aa3.88□□□□□ -1.79
MCF2-208ENST00000519895 MAP2P11137 1827 aaKnown RBP3.87□□□□□ -1.79
MCF2-208ENST00000519895 SMIM22K7EJ46 135 aa3.87□□□□□ -1.79
MCF2-208ENST00000519895 RALBP1Q15311 655 aa3.87□□□□□ -1.79
MCF2-208ENST00000519895 CABLES1Q8TDN4 633 aa3.87□□□□□ -1.79
MCF2-208ENST00000519895 GDF15Q99988 308 aa3.87□□□□□ -1.79
MCF2-208ENST00000519895 Q7L0L9 218 aa3.87□□□□□ -1.79
MCF2-208ENST00000519895 SAPCD2Q86UD0 394 aa3.87□□□□□ -1.79
MCF2-208ENST00000519895 TMEM106CQ9BVX2 250 aa3.87□□□□□ -1.79
MCF2-208ENST00000519895 HDAC9Q9UKV0 1011 aa3.87□□□□□ -1.79
MCF2-208ENST00000519895 MAP3K19Q56UN5 1328 aa3.87□□□□□ -1.79
MCF2-208ENST00000519895 C4BP0C0L5 1744 aa3.87□□□□□ -1.79
MCF2-208ENST00000519895 GCP02774 474 aa3.87□□□□□ -1.79
MCF2-208ENST00000519895 KCNA3P22001 575 aa3.87□□□□□ -1.79
MCF2-208ENST00000519895 CCDC102AQ96A19 550 aa3.87□□□□□ -1.79
MCF2-208ENST00000519895 COG3Q96JB2 828 aa3.87□□□□□ -1.79
MCF2-208ENST00000519895 FARP1Q9Y4F1 1045 aaPredicted RBP3.87□□□□□ -1.79
MCF2-208ENST00000519895 ATRNL1Q5VV63 1379 aa3.87□□□□□ -1.79
MCF2-208ENST00000519895 CACNA1BQ00975 2339 aa3.87□□□□□ -1.79
MCF2-208ENST00000519895 FYB1O15117 783 aa3.86□□□□□ -1.79
MCF2-208ENST00000519895 PRR29P0C7W0 189 aa3.86□□□□□ -1.79
MCF2-208ENST00000519895 NKX1-1Q15270 411 aaPredicted RBP3.86□□□□□ -1.79
MCF2-208ENST00000519895 KRTAP21-3Q3LHN1 58 aa3.86□□□□□ -1.79
MCF2-208ENST00000519895 TMEM121BQ9BXQ6 578 aaPredicted RBP3.86□□□□□ -1.79
MCF2-208ENST00000519895 CABP2Q9NPB3 220 aa3.86□□□□□ -1.79
MCF2-208ENST00000519895 BABAM1Q9NWV8 329 aa3.86□□□□□ -1.79
MCF2-208ENST00000519895 SIPA1L3O60292 1781 aaPredicted RBP3.86□□□□□ -1.79
MCF2-208ENST00000519895 IBTKQ9P2D0 1353 aaPredicted RBP3.86□□□□□ -1.79
MCF2-208ENST00000519895 HTATSF1O43719 755 aaKnown RBP3.86□□□□□ -1.79
MCF2-208ENST00000519895 MRPS5P82675 430 aaKnown RBP3.86□□□□□ -1.79
MCF2-208ENST00000519895 HIRIP3Q9BW71 556 aaPredicted RBP3.86□□□□□ -1.79
MCF2-208ENST00000519895 CCDC87Q9NVE4 849 aa3.86□□□□□ -1.79
MCF2-208ENST00000519895 PI4K2BG5E9Z4 385 aa3.85□□□□□ -1.79
MCF2-208ENST00000519895 EGFRP00533 1210 aa3.85□□□□□ -1.79
MCF2-208ENST00000519895 EN2P19622 333 aaPredicted RBP3.85□□□□□ -1.79
MCF2-208ENST00000519895 ID4P47928 161 aa3.85□□□□□ -1.79
MCF2-208ENST00000519895 RIPPLY3P57055 190 aa3.85□□□□□ -1.79
MCF2-208ENST00000519895 EVA1CP58658 441 aa3.85□□□□□ -1.79
MCF2-208ENST00000519895 MKRN4PQ13434 485 aaPredicted RBP3.85□□□□□ -1.79
MCF2-208ENST00000519895 UBE2Q1Q7Z7E8 422 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms