RNA–Protein interactions for RNA: ENST00000518538.5

VEGFA-217, Transcript of vascular endothelial growth factor A, humanhuman

TSL 2

Gene VEGFA, Length 535 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-217ENST00000518538 TSPYL6Q8N831 410 aa28.44■■■□□ 2.14
VEGFA-217ENST00000518538 DBF4Q9UBU7 674 aaPredicted RBP28.44■■■□□ 2.14
VEGFA-217ENST00000518538 MAP3K15Q6ZN16 1313 aa28.43■■■□□ 2.14
VEGFA-217ENST00000518538 ERVV-1B6SEH8 477 aa28.43■■■□□ 2.14
VEGFA-217ENST00000518538 NLGN2Q8NFZ4 835 aa28.43■■■□□ 2.14
VEGFA-217ENST00000518538 CHMP4AQ9BY43 222 aa28.43■■■□□ 2.14
VEGFA-217ENST00000518538 MYH16Q9H6N6 1097 aa28.43■■■□□ 2.14
VEGFA-217ENST00000518538 SPINK5Q9NQ38 1064 aaPredicted RBP28.43■■■□□ 2.14
VEGFA-217ENST00000518538 CARMIL3Q8ND23 1372 aa28.41■■■□□ 2.14
VEGFA-217ENST00000518538 GOLGA2Q08379 1002 aa28.41■■■□□ 2.14
VEGFA-217ENST00000518538 KIF13BQ9NQT8 1826 aa28.41■■■□□ 2.14
VEGFA-217ENST00000518538 NRXN2Q9P2S2 1712 aa28.4■■■□□ 2.14
VEGFA-217ENST00000518538 SERPINB2P05120 415 aa28.4■■■□□ 2.14
VEGFA-217ENST00000518538 HLFQ16534 295 aa28.4■■■□□ 2.14
VEGFA-217ENST00000518538 SETDB2Q96T68 719 aa28.4■■■□□ 2.14
VEGFA-217ENST00000518538 TWISTNBQ3B726 338 aaPredicted RBP28.39■■■□□ 2.14
VEGFA-217ENST00000518538 COPS6Q7L5N1 327 aa28.39■■■□□ 2.14
VEGFA-217ENST00000518538 CCDC30Q5VVM6 783 aa28.38■■■□□ 2.13
VEGFA-217ENST00000518538 XAGE3Q8WTP9 111 aa28.38■■■□□ 2.13
VEGFA-217ENST00000518538 ZBTB3Q9H5J0 574 aa28.38■■■□□ 2.13
VEGFA-217ENST00000518538 HYPKQ9NX55 129 aa28.38■■■□□ 2.13
VEGFA-217ENST00000518538 AFDNP55196 1824 aaKnown RBP28.37■■■□□ 2.13
VEGFA-217ENST00000518538 AIMP1Q12904 312 aaKnown RBP28.36■■■□□ 2.13
VEGFA-217ENST00000518538 ATP10DQ9P241 1426 aa28.35■■■□□ 2.13
VEGFA-217ENST00000518538 TGFB2P61812 414 aa28.35■■■□□ 2.13
VEGFA-217ENST00000518538 EXOSC9Q06265 439 aaKnown RBP28.35■■■□□ 2.13
VEGFA-217ENST00000518538 NIP7Q9Y221 180 aaKnown RBP eCLIP28.35■■■□□ 2.13
VEGFA-217ENST00000518538 PXDNLA1KZ92 1463 aa28.34■■■□□ 2.13
VEGFA-217ENST00000518538 E9PSI1 815 aa28.34■■■□□ 2.13
VEGFA-217ENST00000518538 GIGYF2Q6Y7W6 1299 aaKnown RBP28.34■■■□□ 2.13
VEGFA-217ENST00000518538 DCAF8L1A6NGE4 600 aa28.33■■■□□ 2.13
VEGFA-217ENST00000518538 NUP98P52948 1817 aa28.33■■■□□ 2.13
VEGFA-217ENST00000518538 KIAA1551Q9HCM1 1747 aa28.32■■■□□ 2.12
VEGFA-217ENST00000518538 VAMP4O75379 141 aa28.31■■■□□ 2.12
VEGFA-217ENST00000518538 PRR5LQ6MZQ0 368 aa28.31■■■□□ 2.12
VEGFA-217ENST00000518538 CNBD1Q8NA66 436 aa28.31■■■□□ 2.12
VEGFA-217ENST00000518538 STK31Q9BXU1 1019 aa28.31■■■□□ 2.12
VEGFA-217ENST00000518538 SLFN5Q08AF3 891 aa28.3■■■□□ 2.12
VEGFA-217ENST00000518538 NBPF5PQ86XG9 351 aaPredicted RBP28.3■■■□□ 2.12
VEGFA-217ENST00000518538 PLBD2Q8NHP8 589 aa28.3■■■□□ 2.12
VEGFA-217ENST00000518538 NPHP1O15259 732 aa28.29■■■□□ 2.12
VEGFA-217ENST00000518538 ZNF34Q8IZ26 560 aa28.29■■■□□ 2.12
VEGFA-217ENST00000518538 PHAXQ9H814 394 aaKnown RBP28.29■■■□□ 2.12
VEGFA-217ENST00000518538 HSP90AB3PQ58FF7 597 aa28.28■■■□□ 2.12
VEGFA-217ENST00000518538 ANKRD13DQ6ZTN6 518 aa28.28■■■□□ 2.12
VEGFA-217ENST00000518538 UBN2Q6ZU65 1347 aa28.27■■■□□ 2.12
VEGFA-217ENST00000518538 A0A0G2JLW4 131 aa28.27■■■□□ 2.12
VEGFA-217ENST00000518538 DPEP1P16444 411 aa28.27■■■□□ 2.12
VEGFA-217ENST00000518538 GPTP24298 496 aa28.27■■■□□ 2.12
VEGFA-217ENST00000518538 ST5P78524 1137 aa28.27■■■□□ 2.12
VEGFA-217ENST00000518538 N4BP2Q86UW6 1770 aaPredicted RBP28.27■■■□□ 2.12
VEGFA-217ENST00000518538 TCERG1O14776 1098 aaKnown RBP28.26■■■□□ 2.11
VEGFA-217ENST00000518538 GPR162Q16538 588 aa28.26■■■□□ 2.11
VEGFA-217ENST00000518538 TPTE2Q6XPS3 522 aa28.26■■■□□ 2.11
VEGFA-217ENST00000518538 CDCA7LQ96GN5 454 aa28.26■■■□□ 2.11
VEGFA-217ENST00000518538 IBTKQ9P2D0 1353 aaPredicted RBP28.25■■■□□ 2.11
VEGFA-217ENST00000518538 PARP10Q53GL7 1025 aa28.25■■■□□ 2.11
VEGFA-217ENST00000518538 PELP1Q8IZL8 1130 aaKnown RBP28.25■■■□□ 2.11
VEGFA-217ENST00000518538 BRIP1Q9BX63 1249 aa28.25■■■□□ 2.11
VEGFA-217ENST00000518538 NYXQ9GZU5 481 aa28.25■■■□□ 2.11
VEGFA-217ENST00000518538 FAM177BA6PVY3 158 aa28.24■■■□□ 2.11
VEGFA-217ENST00000518538 HNRNPUQ00839 825 aaKnown RBP eCLIP28.24■■■□□ 2.11
VEGFA-217ENST00000518538 TCIRG1Q13488 830 aa28.24■■■□□ 2.11
VEGFA-217ENST00000518538 CCDC24Q8N4L8 307 aa28.24■■■□□ 2.11
VEGFA-217ENST00000518538 ANKRD36CQ5JPF3 1778 aa28.24■■■□□ 2.11
VEGFA-217ENST00000518538 SLC4A2P04920 1241 aa28.23■■■□□ 2.11
VEGFA-217ENST00000518538 KCNA3P22001 575 aa28.23■■■□□ 2.11
VEGFA-217ENST00000518538 TRMT2AQ8IZ69 625 aaKnown RBP28.23■■■□□ 2.11
VEGFA-217ENST00000518538 YBX3P16989 372 aaKnown RBP eCLIP28.22■■■□□ 2.11
VEGFA-217ENST00000518538 CHRNA5P30532 468 aa28.22■■■□□ 2.11
VEGFA-217ENST00000518538 PDE6BP35913 854 aa28.22■■■□□ 2.11
VEGFA-217ENST00000518538 SUSD4Q5VX71 490 aa28.22■■■□□ 2.11
VEGFA-217ENST00000518538 RIC3Q7Z5B4 369 aa28.22■■■□□ 2.11
VEGFA-217ENST00000518538 ANKRD31Q8N7Z5 1873 aa28.22■■■□□ 2.11
VEGFA-217ENST00000518538 PDZRN3Q9UPQ7 1066 aa28.22■■■□□ 2.11
VEGFA-217ENST00000518538 DDX58O95786 925 aaKnown RBP28.21■■■□□ 2.11
VEGFA-217ENST00000518538 PPP1R42Q7Z4L9 355 aa28.21■■■□□ 2.11
VEGFA-217ENST00000518538 ARFGEF2Q9Y6D5 1785 aa28.21■■■□□ 2.11
VEGFA-217ENST00000518538 GTF2E1P29083 439 aaPredicted RBP28.2■■■□□ 2.1
VEGFA-217ENST00000518538 WWC3Q9ULE0 1092 aa28.2■■■□□ 2.1
VEGFA-217ENST00000518538 BRCA1P38398 1863 aaKnown RBP28.19■■■□□ 2.1
VEGFA-217ENST00000518538 NTSR2O95665 410 aa28.19■■■□□ 2.1
VEGFA-217ENST00000518538 C2CD5Q86YS7 1000 aa28.19■■■□□ 2.1
VEGFA-217ENST00000518538 PIM2Q9P1W9 311 aa28.19■■■□□ 2.1
VEGFA-217ENST00000518538 H0YIN7 160 aa28.18■■■□□ 2.1
VEGFA-217ENST00000518538 G2E3Q7L622 706 aa28.18■■■□□ 2.1
VEGFA-217ENST00000518538 NLRP10Q86W26 655 aa28.18■■■□□ 2.1
VEGFA-217ENST00000518538 ISCA1Q9BUE6 129 aa28.18■■■□□ 2.1
VEGFA-217ENST00000518538 UTP14AQ9BVJ6 771 aaKnown RBP28.18■■■□□ 2.1
VEGFA-217ENST00000518538 DLEC1Q9Y238 1755 aa28.17■■■□□ 2.1
VEGFA-217ENST00000518538 FLIIQ13045 1269 aa28.17■■■□□ 2.1
VEGFA-217ENST00000518538 NUTM1Q86Y26 1132 aa28.17■■■□□ 2.1
VEGFA-217ENST00000518538 CACNA1FO60840 1977 aa28.17■■■□□ 2.1
VEGFA-217ENST00000518538 RNF123Q5XPI4 1314 aa28.17■■■□□ 2.1
VEGFA-217ENST00000518538 ABCC12Q96J65 1359 aa28.16■■■□□ 2.1
VEGFA-217ENST00000518538 GRIN3BO60391 1043 aa28.16■■■□□ 2.1
VEGFA-217ENST00000518538 ERFEQ4G0M1 354 aa28.16■■■□□ 2.1
VEGFA-217ENST00000518538 KSR2Q6VAB6 950 aa28.16■■■□□ 2.1
VEGFA-217ENST00000518538 BCS1LQ9Y276 419 aa28.15■■■□□ 2.1
VEGFA-217ENST00000518538 RIC1Q4ADV7 1423 aa28.15■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms