RNA–Protein interactions for RNA: ENST00000514335.1

NIPBL-208, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 2,948 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-208ENST00000514335 NGDNQ8NEJ9 315 aaKnown RBP8.65□□□□□ -1.03
NIPBL-208ENST00000514335 CCDC47Q96A33 483 aaKnown RBP8.65□□□□□ -1.03
NIPBL-208ENST00000514335 THOC1Q96FV9 657 aaKnown RBP8.65□□□□□ -1.03
NIPBL-208ENST00000514335 TEX13AQ9BXU3 409 aaPredicted RBP8.65□□□□□ -1.03
NIPBL-208ENST00000514335 R3HCC1Q9Y3T6 440 aaKnown RBP8.65□□□□□ -1.03
NIPBL-208ENST00000514335 COL22A1Q8NFW1 1626 aaPredicted RBP8.65□□□□□ -1.03
NIPBL-208ENST00000514335 DCAF8L1A6NGE4 600 aa8.64□□□□□ -1.03
NIPBL-208ENST00000514335 PIK3R4Q99570 1358 aa8.64□□□□□ -1.03
NIPBL-208ENST00000514335 GIGYF1O75420 1035 aaPredicted RBP8.64□□□□□ -1.03
NIPBL-208ENST00000514335 FCHSD2O94868 740 aa8.64□□□□□ -1.03
NIPBL-208ENST00000514335 POU5F1Q01860 360 aaKnown RBP8.64□□□□□ -1.03
NIPBL-208ENST00000514335 FXNQ16595 210 aa8.64□□□□□ -1.03
NIPBL-208ENST00000514335 MYSM1Q5VVJ2 828 aa8.64□□□□□ -1.03
NIPBL-208ENST00000514335 PDILTQ8N807 584 aa8.64□□□□□ -1.03
NIPBL-208ENST00000514335 SMCR8Q8TEV9 937 aaPredicted RBP8.64□□□□□ -1.03
NIPBL-208ENST00000514335 KCNH8Q96L42 1107 aa8.64□□□□□ -1.03
NIPBL-208ENST00000514335 CALCOCO1Q9P1Z2 691 aa8.64□□□□□ -1.03
NIPBL-208ENST00000514335 POGKQ9P215 609 aa8.64□□□□□ -1.03
NIPBL-208ENST00000514335 G3BP2Q9UN86 482 aaKnown RBP8.64□□□□□ -1.03
NIPBL-208ENST00000514335 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.64□□□□□ -1.03
NIPBL-208ENST00000514335 SYCP2Q9BX26 1530 aa8.64□□□□□ -1.03
NIPBL-208ENST00000514335 SLC27A2O14975 620 aa8.64□□□□□ -1.03
NIPBL-208ENST00000514335 ARMC3Q5W041 872 aa8.64□□□□□ -1.03
NIPBL-208ENST00000514335 PAGR1Q9BTK6 254 aa8.64□□□□□ -1.03
NIPBL-208ENST00000514335 MBD5Q9P267 1494 aa8.63□□□□□ -1.03
NIPBL-208ENST00000514335 SHTN1A0MZ66 631 aa8.63□□□□□ -1.03
NIPBL-208ENST00000514335 HMGB1P1B2RPK0 211 aaPredicted RBP8.63□□□□□ -1.03
NIPBL-208ENST00000514335 ZSCAN30Q86W11 494 aa8.63□□□□□ -1.03
NIPBL-208ENST00000514335 LARGE2Q8N3Y3 721 aa8.63□□□□□ -1.03
NIPBL-208ENST00000514335 TRIML1Q8N9V2 468 aa8.63□□□□□ -1.03
NIPBL-208ENST00000514335 AGAP3Q96P47 875 aa8.63□□□□□ -1.03
NIPBL-208ENST00000514335 TMOD4Q9NZQ9 345 aa8.63□□□□□ -1.03
NIPBL-208ENST00000514335 BLOC1S6Q9UL45 172 aa8.63□□□□□ -1.03
NIPBL-208ENST00000514335 N6AMT1Q9Y5N5 214 aa8.63□□□□□ -1.03
NIPBL-208ENST00000514335 PIK3C2BO00750 1634 aa8.63□□□□□ -1.03
NIPBL-208ENST00000514335 ERBINQ96RT1 1412 aa8.63□□□□□ -1.03
NIPBL-208ENST00000514335 SART3Q15020 963 aaKnown RBP8.63□□□□□ -1.03
NIPBL-208ENST00000514335 TDRD7Q8NHU6 1098 aaKnown RBP8.63□□□□□ -1.03
NIPBL-208ENST00000514335 TATDN2Q93075 761 aa8.63□□□□□ -1.03
NIPBL-208ENST00000514335 CENPOQ9BU64 300 aa8.63□□□□□ -1.03
NIPBL-208ENST00000514335 ETAA1Q9NY74 926 aa8.63□□□□□ -1.03
NIPBL-208ENST00000514335 LRRC7Q96NW7 1537 aa8.63□□□□□ -1.03
NIPBL-208ENST00000514335 UNC13BO14795 1591 aa8.62□□□□□ -1.03
NIPBL-208ENST00000514335 TET3O43151 1660 aa8.62□□□□□ -1.03
NIPBL-208ENST00000514335 STRCP1A6NGW2 1772 aa8.62□□□□□ -1.03
NIPBL-208ENST00000514335 DUOX2Q9NRD8 1548 aa8.62□□□□□ -1.03
NIPBL-208ENST00000514335 TRIM64CA6NLI5 447 aa8.62□□□□□ -1.03
NIPBL-208ENST00000514335 MYBL2P10244 700 aa8.62□□□□□ -1.03
NIPBL-208ENST00000514335 JAKMIP3Q5VZ66 844 aa8.62□□□□□ -1.03
NIPBL-208ENST00000514335 MYLK4Q86YV6 388 aaPredicted RBP8.62□□□□□ -1.03
NIPBL-208ENST00000514335 CCDC146Q8IYE0 955 aa8.62□□□□□ -1.03
NIPBL-208ENST00000514335 FAM163AQ96GL9 167 aaPredicted RBP8.62□□□□□ -1.03
NIPBL-208ENST00000514335 JADE2Q9NQC1 790 aa8.62□□□□□ -1.03
NIPBL-208ENST00000514335 PPP4R2Q9NY27 417 aa8.62□□□□□ -1.03
NIPBL-208ENST00000514335 DHX29Q7Z478 1369 aaKnown RBP8.62□□□□□ -1.03
NIPBL-208ENST00000514335 CCDC141Q6ZP82 1450 aa8.62□□□□□ -1.03
NIPBL-208ENST00000514335 GCC2Q8IWJ2 1684 aa8.62□□□□□ -1.03
NIPBL-208ENST00000514335 NHSL1Q5SYE7 1610 aa8.62□□□□□ -1.03
NIPBL-208ENST00000514335 DYTNA2CJ06 578 aa8.62□□□□□ -1.03
NIPBL-208ENST00000514335 NBPF7P0C2Y1 421 aaPredicted RBP8.62□□□□□ -1.03
NIPBL-208ENST00000514335 NEFHP12036 1026 aa8.62□□□□□ -1.03
NIPBL-208ENST00000514335 NFXL1Q6ZNB6 911 aa8.62□□□□□ -1.03
NIPBL-208ENST00000514335 DPH6Q7L8W6 267 aa8.62□□□□□ -1.03
NIPBL-208ENST00000514335 CCDC175P0C221 793 aa8.61□□□□□ -1.03
NIPBL-208ENST00000514335 GSCP56915 257 aaPredicted RBP8.61□□□□□ -1.03
NIPBL-208ENST00000514335 TBC1D22AQ8WUA7 517 aa8.61□□□□□ -1.03
NIPBL-208ENST00000514335 UTP6Q9NYH9 597 aaKnown RBP8.61□□□□□ -1.03
NIPBL-208ENST00000514335 TMEM63CQ9P1W3 806 aa8.61□□□□□ -1.03
NIPBL-208ENST00000514335 CCDC196A0A1B0GTZ2 297 aa8.61□□□□□ -1.03
NIPBL-208ENST00000514335 ONECUT3O60422 494 aaPredicted RBP8.61□□□□□ -1.03
NIPBL-208ENST00000514335 RAPGEF3O95398 923 aa8.61□□□□□ -1.03
NIPBL-208ENST00000514335 SKIV2LQ15477 1246 aaKnown RBP8.61□□□□□ -1.03
NIPBL-208ENST00000514335 AKNAD1Q5T1N1 836 aa8.61□□□□□ -1.03
NIPBL-208ENST00000514335 TAX1BP1Q86VP1 789 aa8.61□□□□□ -1.03
NIPBL-208ENST00000514335 NPHP4O75161 1426 aaPredicted RBP8.61□□□□□ -1.03
NIPBL-208ENST00000514335 SETSIPP0DME0 302 aa8.6□□□□□ -1.03
NIPBL-208ENST00000514335 ALDH1B1P30837 517 aa8.6□□□□□ -1.03
NIPBL-208ENST00000514335 SRPK2P78362 688 aaKnown RBP8.6□□□□□ -1.03
NIPBL-208ENST00000514335 ZCCHC8Q6NZY4 707 aaKnown RBP8.6□□□□□ -1.03
NIPBL-208ENST00000514335 VPS37AQ8NEZ2 397 aa8.6□□□□□ -1.03
NIPBL-208ENST00000514335 RPS6KC1Q96S38 1066 aa8.6□□□□□ -1.03
NIPBL-208ENST00000514335 IP6K2Q9UHH9 426 aa8.6□□□□□ -1.03
NIPBL-208ENST00000514335 USP25Q9UHP3 1055 aa8.6□□□□□ -1.03
NIPBL-208ENST00000514335 MIA2Q96PC5 1412 aa8.6□□□□□ -1.03
NIPBL-208ENST00000514335 SPDYE4A6NLX3 237 aa8.6□□□□□ -1.03
NIPBL-208ENST00000514335 KIF5CO60282 957 aa8.6□□□□□ -1.03
NIPBL-208ENST00000514335 KANK3Q6NY19 840 aa8.6□□□□□ -1.03
NIPBL-208ENST00000514335 MYO1HQ8N1T3 1032 aa8.6□□□□□ -1.03
NIPBL-208ENST00000514335 PMFBP1Q8TBY8 1022 aa8.6□□□□□ -1.03
NIPBL-208ENST00000514335 C17orf50Q8WW18 174 aa8.6□□□□□ -1.03
NIPBL-208ENST00000514335 SWAP70Q9UH65 585 aa8.6□□□□□ -1.03
NIPBL-208ENST00000514335 ZMYM3Q14202 1370 aa8.6□□□□□ -1.03
NIPBL-208ENST00000514335 ADGRB3O60242 1522 aa8.6□□□□□ -1.03
NIPBL-208ENST00000514335 HMMRO75330 724 aa8.6□□□□□ -1.03
NIPBL-208ENST00000514335 IL4RP24394 825 aa8.6□□□□□ -1.03
NIPBL-208ENST00000514335 GINM1Q9NU53 330 aa8.6□□□□□ -1.03
NIPBL-208ENST00000514335 ERVK-7P63135 1459 aa8.59□□□□□ -1.03
NIPBL-208ENST00000514335 VDRP11473 427 aa8.59□□□□□ -1.03
NIPBL-208ENST00000514335 SMARCA1P28370 1054 aa8.59□□□□□ -1.03
NIPBL-208ENST00000514335 RBM6P78332 1123 aaKnown RBP8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms