RNA–Protein interactions for RNA: ENST00000513989.5

NEDD9-214, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 4

Gene NEDD9, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-214ENST00000513989 SBF1O95248 1867 aa12.97□□□□□ -0.33
NEDD9-214ENST00000513989 DLG5Q8TDM6 1919 aa12.96□□□□□ -0.33
NEDD9-214ENST00000513989 A0A087WZG4 1122 aa12.96□□□□□ -0.33
NEDD9-214ENST00000513989 A1BGP04217 495 aa12.96□□□□□ -0.33
NEDD9-214ENST00000513989 CANXP27824 592 aaKnown RBP12.96□□□□□ -0.33
NEDD9-214ENST00000513989 ARHGEF1Q92888 912 aaKnown RBP12.96□□□□□ -0.33
NEDD9-214ENST00000513989 RTCBQ9Y3I0 505 aaKnown RBP12.96□□□□□ -0.33
NEDD9-214ENST00000513989 KCPQ6ZWJ8 1503 aa12.96□□□□□ -0.33
NEDD9-214ENST00000513989 DDX58O95786 925 aaKnown RBP12.95□□□□□ -0.34
NEDD9-214ENST00000513989 GYS1P13807 737 aa12.95□□□□□ -0.34
NEDD9-214ENST00000513989 MYL6BP14649 208 aa12.95□□□□□ -0.34
NEDD9-214ENST00000513989 IL6STP40189 918 aaPredicted RBP12.95□□□□□ -0.34
NEDD9-214ENST00000513989 SSH1Q8WYL5 1049 aa12.95□□□□□ -0.34
NEDD9-214ENST00000513989 CHPF2Q9P2E5 772 aa12.95□□□□□ -0.34
NEDD9-214ENST00000513989 NRXN2Q9P2S2 1712 aa12.95□□□□□ -0.34
NEDD9-214ENST00000513989 DLEC1Q9Y238 1755 aa12.94□□□□□ -0.34
NEDD9-214ENST00000513989 TCERG1O14776 1098 aaKnown RBP12.94□□□□□ -0.34
NEDD9-214ENST00000513989 RPS6KA4O75676 772 aa12.94□□□□□ -0.34
NEDD9-214ENST00000513989 BRPF1P55201 1214 aaPredicted RBP12.94□□□□□ -0.34
NEDD9-214ENST00000513989 TRAPPC3LQ5T215 181 aa12.94□□□□□ -0.34
NEDD9-214ENST00000513989 INTS5Q6P9B9 1019 aaKnown RBP12.94□□□□□ -0.34
NEDD9-214ENST00000513989 ZNF330Q9Y3S2 320 aaPredicted RBP12.94□□□□□ -0.34
NEDD9-214ENST00000513989 MS4A1P11836 297 aa12.93□□□□□ -0.34
NEDD9-214ENST00000513989 KIF6Q6ZMV9 814 aa12.93□□□□□ -0.34
NEDD9-214ENST00000513989 MRPL50Q8N5N7 158 aaKnown RBP12.93□□□□□ -0.34
NEDD9-214ENST00000513989 RFC4P35249 363 aa12.92□□□□□ -0.34
NEDD9-214ENST00000513989 EIF5P55010 431 aaKnown RBP12.92□□□□□ -0.34
NEDD9-214ENST00000513989 AIMP1Q12904 312 aaKnown RBP12.92□□□□□ -0.34
NEDD9-214ENST00000513989 PDIA6Q15084 440 aa12.92□□□□□ -0.34
NEDD9-214ENST00000513989 CCDC88AQ3V6T2 1871 aa12.92□□□□□ -0.34
NEDD9-214ENST00000513989 COPS6Q7L5N1 327 aa12.92□□□□□ -0.34
NEDD9-214ENST00000513989 ARHGAP45Q92619 1136 aa12.92□□□□□ -0.34
NEDD9-214ENST00000513989 ZBTB1Q9Y2K1 713 aa12.92□□□□□ -0.34
NEDD9-214ENST00000513989 PTPRCP08575 1304 aa12.91□□□□□ -0.34
NEDD9-214ENST00000513989 KIF16BQ96L93 1317 aa12.91□□□□□ -0.34
NEDD9-214ENST00000513989 NBPF26B4DH59 902 aa12.91□□□□□ -0.34
NEDD9-214ENST00000513989 ZPR1O75312 459 aa12.91□□□□□ -0.34
NEDD9-214ENST00000513989 BCAR3O75815 825 aa12.91□□□□□ -0.34
NEDD9-214ENST00000513989 FLIIQ13045 1269 aa12.91□□□□□ -0.34
NEDD9-214ENST00000513989 FKBP5Q13451 457 aaPredicted RBP12.91□□□□□ -0.34
NEDD9-214ENST00000513989 NBPF10Q6P3W6 841 aaKnown RBP12.91□□□□□ -0.34
NEDD9-214ENST00000513989 ANKRD13DQ6ZTN6 518 aa12.91□□□□□ -0.34
NEDD9-214ENST00000513989 NLGN1Q8N2Q7 840 aa12.91□□□□□ -0.34
NEDD9-214ENST00000513989 NBPF15Q8N660 670 aa12.91□□□□□ -0.34
NEDD9-214ENST00000513989 XAGE3Q8WTP9 111 aa12.91□□□□□ -0.34
NEDD9-214ENST00000513989 FRAT1Q92837 279 aaPredicted RBP12.91□□□□□ -0.34
NEDD9-214ENST00000513989 BCL2L13Q9BXK5 485 aa12.91□□□□□ -0.34
NEDD9-214ENST00000513989 API5Q9BZZ5 524 aaKnown RBP12.91□□□□□ -0.34
NEDD9-214ENST00000513989 SRP68Q9UHB9 627 aaKnown RBP12.91□□□□□ -0.34
NEDD9-214ENST00000513989 NOB1Q9ULX3 412 aaKnown RBP12.91□□□□□ -0.34
NEDD9-214ENST00000513989 USP42Q9H9J4 1324 aaKnown RBP12.9□□□□□ -0.34
NEDD9-214ENST00000513989 A0A0G2JLW4 131 aa12.9□□□□□ -0.34
NEDD9-214ENST00000513989 KCNA3P22001 575 aa12.9□□□□□ -0.34
NEDD9-214ENST00000513989 DDR1Q08345 913 aa12.9□□□□□ -0.34
NEDD9-214ENST00000513989 FKBP8Q14318 412 aa12.9□□□□□ -0.34
NEDD9-214ENST00000513989 PROSER3Q2NL68 480 aa12.9□□□□□ -0.34
NEDD9-214ENST00000513989 RIC3Q7Z5B4 369 aa12.9□□□□□ -0.34
NEDD9-214ENST00000513989 ANKRD31Q8N7Z5 1873 aa12.9□□□□□ -0.34
NEDD9-214ENST00000513989 ERVV-1B6SEH8 477 aa12.89□□□□□ -0.35
NEDD9-214ENST00000513989 ANXA1P04083 346 aa12.89□□□□□ -0.35
NEDD9-214ENST00000513989 PIP4K2AP48426 406 aaPredicted RBP12.89□□□□□ -0.35
NEDD9-214ENST00000513989 TGFB2P61812 414 aa12.89□□□□□ -0.35
NEDD9-214ENST00000513989 ZKSCAN2Q63HK3 967 aa12.89□□□□□ -0.35
NEDD9-214ENST00000513989 DZIP3Q86Y13 1208 aaKnown RBP12.89□□□□□ -0.35
NEDD9-214ENST00000513989 PLBD2Q8NHP8 589 aa12.89□□□□□ -0.35
NEDD9-214ENST00000513989 ZNF526Q8TF50 670 aaPredicted RBP12.89□□□□□ -0.35
NEDD9-214ENST00000513989 PHAXQ9H814 394 aaKnown RBP12.89□□□□□ -0.35
NEDD9-214ENST00000513989 ZNF652Q9Y2D9 606 aa12.89□□□□□ -0.35
NEDD9-214ENST00000513989 DPEP1P16444 411 aa12.88□□□□□ -0.35
NEDD9-214ENST00000513989 NEXNQ0ZGT2 675 aa12.88□□□□□ -0.35
NEDD9-214ENST00000513989 HSP90AB3PQ58FF7 597 aa12.88□□□□□ -0.35
NEDD9-214ENST00000513989 KSR2Q6VAB6 950 aa12.88□□□□□ -0.35
NEDD9-214ENST00000513989 ATF7IPQ6VMQ6 1270 aa12.88□□□□□ -0.35
NEDD9-214ENST00000513989 GPBP1L1Q9HC44 474 aaPredicted RBP12.88□□□□□ -0.35
NEDD9-214ENST00000513989 TBC1D2BQ9UPU7 963 aa12.88□□□□□ -0.35
NEDD9-214ENST00000513989 SCN7AQ01118 1682 aa12.88□□□□□ -0.35
NEDD9-214ENST00000513989 KDM3BQ7LBC6 1761 aa12.87□□□□□ -0.35
NEDD9-214ENST00000513989 KIF3CO14782 793 aa12.87□□□□□ -0.35
NEDD9-214ENST00000513989 RGL2O15211 777 aa12.87□□□□□ -0.35
NEDD9-214ENST00000513989 CLEC4GQ6UXB4 293 aa12.87□□□□□ -0.35
NEDD9-214ENST00000513989 FTSJ3Q8IY81 847 aaKnown RBP12.87□□□□□ -0.35
NEDD9-214ENST00000513989 NARFQ9UHQ1 456 aa12.87□□□□□ -0.35
NEDD9-214ENST00000513989 SUPT16HQ9Y5B9 1047 aaKnown RBP12.87□□□□□ -0.35
NEDD9-214ENST00000513989 COL11A2P13942 1736 aaPredicted RBP12.86□□□□□ -0.35
NEDD9-214ENST00000513989 PI4KAP2A4QPH2 592 aa12.86□□□□□ -0.35
NEDD9-214ENST00000513989 TM4SF1P30408 202 aa12.86□□□□□ -0.35
NEDD9-214ENST00000513989 TTLL7Q6ZT98 887 aa12.86□□□□□ -0.35
NEDD9-214ENST00000513989 G2E3Q7L622 706 aa12.86□□□□□ -0.35
NEDD9-214ENST00000513989 LRP10Q7Z4F1 713 aa12.86□□□□□ -0.35
NEDD9-214ENST00000513989 PI4KAP1Q8N8J0 262 aa12.86□□□□□ -0.35
NEDD9-214ENST00000513989 BCORQ6W2J9 1755 aa12.86□□□□□ -0.35
NEDD9-214ENST00000513989 MAP3K15Q6ZN16 1313 aa12.86□□□□□ -0.35
NEDD9-214ENST00000513989 CACNA1SQ13698 1873 aa12.85□□□□□ -0.35
NEDD9-214ENST00000513989 POLRMTO00411 1230 aaKnown RBP12.85□□□□□ -0.35
NEDD9-214ENST00000513989 SLC4A10Q6U841 1118 aa12.85□□□□□ -0.35
NEDD9-214ENST00000513989 DZIP1LQ8IYY4 767 aaKnown RBP12.85□□□□□ -0.35
NEDD9-214ENST00000513989 DNAAF4Q8WXU2 420 aa12.85□□□□□ -0.35
NEDD9-214ENST00000513989 CHMP4BQ9H444 224 aaKnown RBP12.85□□□□□ -0.35
NEDD9-214ENST00000513989 BCS1LQ9Y276 419 aa12.85□□□□□ -0.35
NEDD9-214ENST00000513989 MAP3K2Q9Y2U5 619 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms