RNA–Protein interactions for RNA: ENST00000512107.5

MATR3-238, Transcript of matrin 3, human

TSL 4

Gene MATR3, Length 579 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-238	ENST00000512107	MSL1	Q68DK7	614 aa		18.68	■□□□□ 0.58
MATR3-238	ENST00000512107	MSH5	O43196	834 aa		18.67	■□□□□ 0.58
MATR3-238	ENST00000512107	ADRA2B	P18089	450 aa		18.67	■□□□□ 0.58
MATR3-238	ENST00000512107	FLII	Q13045	1269 aa		18.67	■□□□□ 0.58
MATR3-238	ENST00000512107	ZNF428	Q96B54	188 aa		18.67	■□□□□ 0.58
MATR3-238	ENST00000512107	ARX	Q96QS3	562 aa		18.67	■□□□□ 0.58
MATR3-238	ENST00000512107	STK31	Q9BXU1	1019 aa		18.67	■□□□□ 0.58
MATR3-238	ENST00000512107	SMC4	Q9NTJ3	1288 aa		18.67	■□□□□ 0.58
MATR3-238	ENST00000512107	MAP3K15	Q6ZN16	1313 aa		18.67	■□□□□ 0.58
MATR3-238	ENST00000512107		F6X3S4	739 aa		18.66	■□□□□ 0.58
MATR3-238	ENST00000512107	ZBTB7A	O95365	584 aa		18.66	■□□□□ 0.58
MATR3-238	ENST00000512107	RFC4	P35249	363 aa		18.66	■□□□□ 0.58
MATR3-238	ENST00000512107	NOB1	Q9ULX3	412 aa	Known RBP	18.66	■□□□□ 0.58
MATR3-238	ENST00000512107	TBC1D9B	Q66K14	1250 aa		18.65	■□□□□ 0.58
MATR3-238	ENST00000512107	RCAN3	Q9UKA8	241 aa		18.65	■□□□□ 0.58
MATR3-238	ENST00000512107		A0A087WZG4	1122 aa		18.64	■□□□□ 0.57
MATR3-238	ENST00000512107	BRPF1	P55201	1214 aa	Predicted RBP	18.64	■□□□□ 0.57
MATR3-238	ENST00000512107	ANKRD36C	Q5JPF3	1778 aa		18.63	■□□□□ 0.57
MATR3-238	ENST00000512107	PI4KAP2	A4QPH2	592 aa		18.63	■□□□□ 0.57
MATR3-238	ENST00000512107	DDR1	Q08345	913 aa		18.63	■□□□□ 0.57
MATR3-238	ENST00000512107	ANKRD13D	Q6ZTN6	518 aa		18.63	■□□□□ 0.57
MATR3-238	ENST00000512107	PI4KAP1	Q8N8J0	262 aa		18.63	■□□□□ 0.57
MATR3-238	ENST00000512107	PLBD2	Q8NHP8	589 aa		18.63	■□□□□ 0.57
MATR3-238	ENST00000512107	ATF5	Q9Y2D1	282 aa	Predicted RBP	18.63	■□□□□ 0.57
MATR3-238	ENST00000512107	PLIN1	O60240	522 aa		18.62	■□□□□ 0.57
MATR3-238	ENST00000512107	TM4SF1	P30408	202 aa		18.62	■□□□□ 0.57
MATR3-238	ENST00000512107	FLAD1	Q8NFF5	587 aa		18.62	■□□□□ 0.57
MATR3-238	ENST00000512107	MAP3K2	Q9Y2U5	619 aa		18.62	■□□□□ 0.57
MATR3-238	ENST00000512107	UBN2	Q6ZU65	1347 aa		18.62	■□□□□ 0.57
MATR3-238	ENST00000512107	ERVV-1	B6SEH8	477 aa		18.61	■□□□□ 0.57
MATR3-238	ENST00000512107	ZPR1	O75312	459 aa		18.61	■□□□□ 0.57
MATR3-238	ENST00000512107	FKBP5	Q13451	457 aa	Predicted RBP	18.61	■□□□□ 0.57
MATR3-238	ENST00000512107	NFIX	Q14938	502 aa		18.61	■□□□□ 0.57
MATR3-238	ENST00000512107	KSR2	Q6VAB6	950 aa		18.61	■□□□□ 0.57
MATR3-238	ENST00000512107	GIGYF2	Q6Y7W6	1299 aa	Known RBP	18.61	■□□□□ 0.57
MATR3-238	ENST00000512107	KIF6	Q6ZMV9	814 aa		18.61	■□□□□ 0.57
MATR3-238	ENST00000512107	BICDL1	Q6ZP65	573 aa		18.61	■□□□□ 0.57
MATR3-238	ENST00000512107	SGIP1	Q9BQI5	828 aa		18.61	■□□□□ 0.57
MATR3-238	ENST00000512107	AFDN	P55196	1824 aa	Known RBP	18.6	■□□□□ 0.57
MATR3-238	ENST00000512107	ATP5J2-PTCD1	G3V325	749 aa		18.6	■□□□□ 0.57
MATR3-238	ENST00000512107	IGKV5-2	P06315	115 aa		18.6	■□□□□ 0.57
MATR3-238	ENST00000512107	GPT	P24298	496 aa		18.6	■□□□□ 0.57
MATR3-238	ENST00000512107	ZNF34	Q8IZ26	560 aa		18.6	■□□□□ 0.57
MATR3-238	ENST00000512107	HMGB2	P26583	209 aa	Known RBP	18.59	■□□□□ 0.57
MATR3-238	ENST00000512107	PTGER2	P43116	358 aa		18.59	■□□□□ 0.57
MATR3-238	ENST00000512107	RIC3	Q7Z5B4	369 aa		18.59	■□□□□ 0.57
MATR3-238	ENST00000512107	MYD88	Q99836	296 aa		18.59	■□□□□ 0.57
MATR3-238	ENST00000512107	ISCA1	Q9BUE6	129 aa		18.59	■□□□□ 0.57
MATR3-238	ENST00000512107	ATP10D	Q9P241	1426 aa		18.58	■□□□□ 0.57
MATR3-238	ENST00000512107	RLBP1	P12271	317 aa		18.58	■□□□□ 0.56
MATR3-238	ENST00000512107	TCIRG1	Q13488	830 aa		18.58	■□□□□ 0.56
MATR3-238	ENST00000512107	FRAT1	Q92837	279 aa	Predicted RBP	18.58	■□□□□ 0.56
MATR3-238	ENST00000512107	METTL22	Q9BUU2	404 aa	Predicted RBP	18.58	■□□□□ 0.56
MATR3-238	ENST00000512107	POLRMT	O00411	1230 aa	Known RBP	18.57	■□□□□ 0.56
MATR3-238	ENST00000512107	TRIM27	P14373	513 aa		18.57	■□□□□ 0.56
MATR3-238	ENST00000512107	CWF19L2	Q2TBE0	894 aa	Known RBP	18.57	■□□□□ 0.56
MATR3-238	ENST00000512107	C20orf194	Q5TEA3	1177 aa		18.57	■□□□□ 0.56
MATR3-238	ENST00000512107	SUSD4	Q5VX71	490 aa		18.57	■□□□□ 0.56
MATR3-238	ENST00000512107	SYNE4	Q8N205	404 aa		18.57	■□□□□ 0.56
MATR3-238	ENST00000512107	CCDC24	Q8N4L8	307 aa		18.57	■□□□□ 0.56
MATR3-238	ENST00000512107	DNAAF4	Q8WXU2	420 aa		18.57	■□□□□ 0.56
MATR3-238	ENST00000512107	JARID2	Q92833	1246 aa	Predicted RBP	18.57	■□□□□ 0.56
MATR3-238	ENST00000512107	CHMP4A	Q9BY43	222 aa		18.57	■□□□□ 0.56
MATR3-238	ENST00000512107	NRXN2	Q9P2S2	1712 aa		18.57	■□□□□ 0.56
MATR3-238	ENST00000512107	N4BP2	Q86UW6	1770 aa	Predicted RBP	18.56	■□□□□ 0.56
MATR3-238	ENST00000512107	MMP10	P09238	476 aa		18.56	■□□□□ 0.56
MATR3-238	ENST00000512107	BEND3	Q5T5X7	828 aa		18.56	■□□□□ 0.56
MATR3-238	ENST00000512107	CLEC4G	Q6UXB4	293 aa		18.56	■□□□□ 0.56
MATR3-238	ENST00000512107	SLC16A10	Q8TF71	515 aa		18.56	■□□□□ 0.56
MATR3-238	ENST00000512107	MTFR1L	Q9H019	292 aa		18.56	■□□□□ 0.56
MATR3-238	ENST00000512107	NIP7	Q9Y221	180 aa	Known RBP eCLIP	18.56	■□□□□ 0.56	1e-323	■■□□□ 14.4
MATR3-238	ENST00000512107	PTPRC	P08575	1304 aa		18.55	■□□□□ 0.56
MATR3-238	ENST00000512107	FAM177B	A6PVY3	158 aa		18.55	■□□□□ 0.56
MATR3-238	ENST00000512107	NPM2	Q86SE8	214 aa	Known RBP	18.55	■□□□□ 0.56
MATR3-238	ENST00000512107	NLRP10	Q86W26	655 aa		18.55	■□□□□ 0.56
MATR3-238	ENST00000512107	CLUAP1	Q96AJ1	413 aa		18.55	■□□□□ 0.56
MATR3-238	ENST00000512107	LRP5	O75197	1615 aa		18.55	■□□□□ 0.56
MATR3-238	ENST00000512107	CARMIL3	Q8ND23	1372 aa		18.55	■□□□□ 0.56
MATR3-238	ENST00000512107	ABCC4	O15439	1325 aa		18.54	■□□□□ 0.56
MATR3-238	ENST00000512107	ATF7IP	Q6VMQ6	1270 aa		18.54	■□□□□ 0.56
MATR3-238	ENST00000512107	NLGN1	Q8N2Q7	840 aa		18.54	■□□□□ 0.56
MATR3-238	ENST00000512107	NEURL1B	A8MQ27	555 aa		18.53	■□□□□ 0.56
MATR3-238	ENST00000512107	RGL2	O15211	777 aa		18.53	■□□□□ 0.56
MATR3-238	ENST00000512107	NTSR2	O95665	410 aa		18.53	■□□□□ 0.56
MATR3-238	ENST00000512107	DDX58	O95786	925 aa	Known RBP	18.53	■□□□□ 0.56
MATR3-238	ENST00000512107	SLC4A10	Q6U841	1118 aa		18.53	■□□□□ 0.56
MATR3-238	ENST00000512107	ANKRD31	Q8N7Z5	1873 aa		18.53	■□□□□ 0.56
MATR3-238	ENST00000512107	PANK1	Q8TE04	598 aa		18.53	■□□□□ 0.56
MATR3-238	ENST00000512107	ARHGAP45	Q92619	1136 aa		18.53	■□□□□ 0.56
MATR3-238	ENST00000512107	KIF16B	Q96L93	1317 aa		18.52	■□□□□ 0.56
MATR3-238	ENST00000512107	ZKSCAN2	Q63HK3	967 aa		18.52	■□□□□ 0.56
MATR3-238	ENST00000512107	NUTM1	Q86Y26	1132 aa		18.52	■□□□□ 0.56
MATR3-238	ENST00000512107	TNRC6C	Q9HCJ0	1690 aa	Known RBP	18.52	■□□□□ 0.56
MATR3-238	ENST00000512107	ABCC12	Q96J65	1359 aa		18.52	■□□□□ 0.55
MATR3-238	ENST00000512107	RNF123	Q5XPI4	1314 aa		18.51	■□□□□ 0.55
MATR3-238	ENST00000512107	SERPINB2	P05120	415 aa		18.51	■□□□□ 0.55
MATR3-238	ENST00000512107	TRIM28	Q13263	835 aa	Known RBP	18.51	■□□□□ 0.55
MATR3-238	ENST00000512107	TMEM57	Q8N5G2	664 aa		18.51	■□□□□ 0.55
MATR3-238	ENST00000512107	SETDB2	Q96T68	719 aa		18.51	■□□□□ 0.55
MATR3-238	ENST00000512107	ZNF652	Q9Y2D9	606 aa		18.51	■□□□□ 0.55

Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms