RNA–Protein interactions for RNA: ENST00000505010.5

TPM3-218, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 540 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-218ENST00000505010 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.89□□□□□ -0.51
TPM3-218ENST00000505010 PRAMEF22A3QJZ6 481 aa11.89□□□□□ -0.51
TPM3-218ENST00000505010 SLC4A2P04920 1241 aa11.89□□□□□ -0.51
TPM3-218ENST00000505010 RLBP1P12271 317 aa11.89□□□□□ -0.51
TPM3-218ENST00000505010 HTRA3P83110 453 aa11.89□□□□□ -0.51
TPM3-218ENST00000505010 PIGBQ92521 554 aa11.89□□□□□ -0.51
TPM3-218ENST00000505010 CHMP4AQ9BY43 222 aa11.89□□□□□ -0.51
TPM3-218ENST00000505010 API5Q9BZZ5 524 aaKnown RBP11.89□□□□□ -0.51
TPM3-218ENST00000505010 COG6Q9Y2V7 657 aa11.89□□□□□ -0.51
TPM3-218ENST00000505010 PALLDQ8WX93 1383 aa11.89□□□□□ -0.51
TPM3-218ENST00000505010 PTPRCP08575 1304 aa11.88□□□□□ -0.51
TPM3-218ENST00000505010 SNRPA1P09661 255 aaKnown RBP11.88□□□□□ -0.51
TPM3-218ENST00000505010 ARHGAP27Q6ZUM4 889 aa11.88□□□□□ -0.51
TPM3-218ENST00000505010 ARHGAP45Q92619 1136 aa11.88□□□□□ -0.51
TPM3-218ENST00000505010 CHPF2Q9P2E5 772 aa11.88□□□□□ -0.51
TPM3-218ENST00000505010 BCS1LQ9Y276 419 aa11.88□□□□□ -0.51
TPM3-218ENST00000505010 CICQ96RK0 1608 aaPredicted RBP11.87□□□□□ -0.51
TPM3-218ENST00000505010 PTCD1O75127 700 aaKnown RBP11.87□□□□□ -0.51
TPM3-218ENST00000505010 SSFA2P28290 1259 aa11.87□□□□□ -0.51
TPM3-218ENST00000505010 FSTL1Q12841 308 aa11.87□□□□□ -0.51
TPM3-218ENST00000505010 SMIM5Q71RC9 77 aa11.87□□□□□ -0.51
TPM3-218ENST00000505010 G2E3Q7L622 706 aa11.87□□□□□ -0.51
TPM3-218ENST00000505010 AMIGO3Q86WK7 504 aa11.87□□□□□ -0.51
TPM3-218ENST00000505010 ITPRIPQ8IWB1 547 aa11.87□□□□□ -0.51
TPM3-218ENST00000505010 SMARCC1Q92922 1105 aaPredicted RBP11.87□□□□□ -0.51
TPM3-218ENST00000505010 ABCC4O15439 1325 aa11.86□□□□□ -0.51
TPM3-218ENST00000505010 TGFB2P61812 414 aa11.86□□□□□ -0.51
TPM3-218ENST00000505010 FLIIQ13045 1269 aa11.86□□□□□ -0.51
TPM3-218ENST00000505010 MVPQ14764 893 aaKnown RBP11.86□□□□□ -0.51
TPM3-218ENST00000505010 TMEM57Q8N5G2 664 aa11.86□□□□□ -0.51
TPM3-218ENST00000505010 ATG3Q9NT62 314 aa11.86□□□□□ -0.51
TPM3-218ENST00000505010 DBF4Q9UBU7 674 aaPredicted RBP11.86□□□□□ -0.51
TPM3-218ENST00000505010 ASAP1Q9ULH1 1129 aa11.86□□□□□ -0.51
TPM3-218ENST00000505010 PXDNLA1KZ92 1463 aa11.86□□□□□ -0.51
TPM3-218ENST00000505010 ARFGEF2Q9Y6D5 1785 aa11.86□□□□□ -0.51
TPM3-218ENST00000505010 ANXA1P04083 346 aa11.85□□□□□ -0.51
TPM3-218ENST00000505010 FKBP5Q13451 457 aaPredicted RBP11.85□□□□□ -0.51
TPM3-218ENST00000505010 B4GALNT3Q6L9W6 998 aa11.85□□□□□ -0.51
TPM3-218ENST00000505010 CCDC136Q96JN2 1154 aa11.85□□□□□ -0.51
TPM3-218ENST00000505010 RBM42Q9BTD8 480 aaKnown RBP11.85□□□□□ -0.51
TPM3-218ENST00000505010 AFDNP55196 1824 aaKnown RBP11.85□□□□□ -0.51
TPM3-218ENST00000505010 COL5A3P25940 1745 aaPredicted RBP11.85□□□□□ -0.51
TPM3-218ENST00000505010 WDR90Q96KV7 1748 aa11.85□□□□□ -0.51
TPM3-218ENST00000505010 A0A0G2JLW4 131 aa11.84□□□□□ -0.51
TPM3-218ENST00000505010 MMP10P09238 476 aa11.84□□□□□ -0.51
TPM3-218ENST00000505010 PROSER3Q2NL68 480 aa11.84□□□□□ -0.51
TPM3-218ENST00000505010 DDX19BQ9UMR2 479 aa11.84□□□□□ -0.51
TPM3-218ENST00000505010 ZNF831Q5JPB2 1677 aa11.84□□□□□ -0.51
TPM3-218ENST00000505010 MYL6BP14649 208 aa11.83□□□□□ -0.52
TPM3-218ENST00000505010 C9orf131Q5VYM1 1079 aa11.83□□□□□ -0.52
TPM3-218ENST00000505010 PHAXQ9H814 394 aaKnown RBP11.83□□□□□ -0.52
TPM3-218ENST00000505010 DDX21Q9NR30 783 aaKnown RBP eCLIP11.83□□□□□ -0.52
TPM3-218ENST00000505010 HYPKQ9NX55 129 aa11.83□□□□□ -0.52
TPM3-218ENST00000505010 USP16Q9Y5T5 823 aa11.83□□□□□ -0.52
TPM3-218ENST00000505010 TAF1LQ8IZX4 1826 aa11.83□□□□□ -0.52
TPM3-218ENST00000505010 KDM2BQ8NHM5 1336 aa11.83□□□□□ -0.52
TPM3-218ENST00000505010 C4BP0C0L5 1744 aa11.83□□□□□ -0.52
TPM3-218ENST00000505010 F6X3S4 739 aa11.82□□□□□ -0.52
TPM3-218ENST00000505010 SLC4A10Q6U841 1118 aa11.82□□□□□ -0.52
TPM3-218ENST00000505010 VSIG10Q8N0Z9 540 aa11.82□□□□□ -0.52
TPM3-218ENST00000505010 ERBB4Q15303 1308 aa11.82□□□□□ -0.52
TPM3-218ENST00000505010 LOC102724428A0A0B4J2F2 783 aa11.81□□□□□ -0.52
TPM3-218ENST00000505010 GNPATO15228 680 aa11.81□□□□□ -0.52
TPM3-218ENST00000505010 PIP4K2AP48426 406 aaPredicted RBP11.81□□□□□ -0.52
TPM3-218ENST00000505010 SIK1P57059 783 aa11.81□□□□□ -0.52
TPM3-218ENST00000505010 DNAJC10Q8IXB1 793 aa11.81□□□□□ -0.52
TPM3-218ENST00000505010 NLGN1Q8N2Q7 840 aa11.81□□□□□ -0.52
TPM3-218ENST00000505010 LINC00116Q8NCU8 138 aa11.81□□□□□ -0.52
TPM3-218ENST00000505010 RRAGCQ9HB90 399 aa11.81□□□□□ -0.52
TPM3-218ENST00000505010 DPEP1P16444 411 aa11.8□□□□□ -0.52
TPM3-218ENST00000505010 CCT4P50991 539 aaKnown RBP11.8□□□□□ -0.52
TPM3-218ENST00000505010 AIMP1Q12904 312 aaKnown RBP11.8□□□□□ -0.52
TPM3-218ENST00000505010 AAMPQ13685 434 aa11.8□□□□□ -0.52
TPM3-218ENST00000505010 PDIA6Q15084 440 aa11.8□□□□□ -0.52
TPM3-218ENST00000505010 INTS3Q68E01 1043 aaKnown RBP11.8□□□□□ -0.52
TPM3-218ENST00000505010 SMC1BQ8NDV3 1235 aa11.8□□□□□ -0.52
TPM3-218ENST00000505010 TEX13AQ9BXU3 409 aaPredicted RBP11.8□□□□□ -0.52
TPM3-218ENST00000505010 UBR3Q6ZT12 1888 aa11.8□□□□□ -0.52
TPM3-218ENST00000505010 ANKRD36CQ5JPF3 1778 aa11.79□□□□□ -0.52
TPM3-218ENST00000505010 STARD3NLO95772 234 aa11.79□□□□□ -0.52
TPM3-218ENST00000505010 DDX58O95786 925 aaKnown RBP11.79□□□□□ -0.52
TPM3-218ENST00000505010 HSPA1AP0DMV8 641 aaKnown RBP11.79□□□□□ -0.52
TPM3-218ENST00000505010 HSPA1BP0DMV9 641 aaKnown RBP11.79□□□□□ -0.52
TPM3-218ENST00000505010 ATP6V1AP38606 617 aa11.79□□□□□ -0.52
TPM3-218ENST00000505010 TRAPPC3LQ5T215 181 aa11.79□□□□□ -0.52
TPM3-218ENST00000505010 XAGE3Q8WTP9 111 aa11.79□□□□□ -0.52
TPM3-218ENST00000505010 SLC4A9Q96Q91 983 aa11.79□□□□□ -0.52
TPM3-218ENST00000505010 CHMP4BQ9H444 224 aaKnown RBP11.79□□□□□ -0.52
TPM3-218ENST00000505010 CCDC87Q9NVE4 849 aa11.79□□□□□ -0.52
TPM3-218ENST00000505010 PI4KAP2A4QPH2 592 aa11.78□□□□□ -0.52
TPM3-218ENST00000505010 NBPF26B4DH59 902 aa11.78□□□□□ -0.52
TPM3-218ENST00000505010 A1BGP04217 495 aa11.78□□□□□ -0.52
TPM3-218ENST00000505010 NBPF10Q6P3W6 841 aaKnown RBP11.78□□□□□ -0.52
TPM3-218ENST00000505010 NBPF15Q8N660 670 aa11.78□□□□□ -0.52
TPM3-218ENST00000505010 PI4KAP1Q8N8J0 262 aa11.78□□□□□ -0.52
TPM3-218ENST00000505010 DNAAF4Q8WXU2 420 aa11.78□□□□□ -0.52
TPM3-218ENST00000505010 PIM2Q9P1W9 311 aa11.78□□□□□ -0.52
TPM3-218ENST00000505010 MAP3K2Q9Y2U5 619 aa11.78□□□□□ -0.52
TPM3-218ENST00000505010 MYH14Q7Z406 1995 aaKnown RBP11.78□□□□□ -0.52
TPM3-218ENST00000505010 ITPK1Q13572 414 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms