RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 NGEFQ8N5V2 710 aa23.6■■□□□ 1.37
SQSTM1-209ENST00000504627 TSPYL4Q9UJ04 414 aa23.6■■□□□ 1.37
SQSTM1-209ENST00000504627 TMPOP42166 694 aaKnown RBP23.59■■□□□ 1.37
SQSTM1-209ENST00000504627 CCDC146Q8IYE0 955 aa23.59■■□□□ 1.37
SQSTM1-209ENST00000504627 RRP7AQ9Y3A4 280 aaKnown RBP23.59■■□□□ 1.37
SQSTM1-209ENST00000504627 NEUROD2Q15784 382 aa23.58■■□□□ 1.37
SQSTM1-209ENST00000504627 NIP7Q9Y221 180 aaKnown RBP eCLIP23.58■■□□□ 1.37
SQSTM1-209ENST00000504627 BCORQ6W2J9 1755 aa23.57■■□□□ 1.36
SQSTM1-209ENST00000504627 RASSF7Q02833 373 aa23.57■■□□□ 1.36
SQSTM1-209ENST00000504627 KDM3BQ7LBC6 1761 aa23.57■■□□□ 1.36
SQSTM1-209ENST00000504627 MYL6BP14649 208 aa23.56■■□□□ 1.36
SQSTM1-209ENST00000504627 FAM177BA6PVY3 158 aa23.55■■□□□ 1.36
SQSTM1-209ENST00000504627 KIF3CO14782 793 aa23.55■■□□□ 1.36
SQSTM1-209ENST00000504627 RGL2O15211 777 aa23.55■■□□□ 1.36
SQSTM1-209ENST00000504627 CCDC184Q52MB2 194 aa23.55■■□□□ 1.36
SQSTM1-209ENST00000504627 TPTE2Q6XPS3 522 aa23.55■■□□□ 1.36
SQSTM1-209ENST00000504627 RUNDC1Q96C34 613 aa23.55■■□□□ 1.36
SQSTM1-209ENST00000504627 ZNF219Q9P2Y4 722 aaPredicted RBP23.55■■□□□ 1.36
SQSTM1-209ENST00000504627 LAMB4A4D0S4 1761 aa23.55■■□□□ 1.36
SQSTM1-209ENST00000504627 DLEC1Q9Y238 1755 aa23.55■■□□□ 1.36
SQSTM1-209ENST00000504627 HLFQ16534 295 aa23.54■■□□□ 1.36
SQSTM1-209ENST00000504627 KIF6Q6ZMV9 814 aa23.54■■□□□ 1.36
SQSTM1-209ENST00000504627 GTF2E1P29083 439 aaPredicted RBP23.53■■□□□ 1.36
SQSTM1-209ENST00000504627 CNKSR1Q969H4 720 aa23.53■■□□□ 1.36
SQSTM1-209ENST00000504627 BABAM1Q9NWV8 329 aa23.53■■□□□ 1.36
SQSTM1-209ENST00000504627 ANKRD31Q8N7Z5 1873 aa23.53■■□□□ 1.36
SQSTM1-209ENST00000504627 C21orf2O43822 256 aa23.52■■□□□ 1.36
SQSTM1-209ENST00000504627 LMNB1P20700 586 aa23.52■■□□□ 1.36
SQSTM1-209ENST00000504627 MASTLQ96GX5 879 aa23.52■■□□□ 1.36
SQSTM1-209ENST00000504627 NMRK2Q9NPI5 230 aa23.52■■□□□ 1.36
SQSTM1-209ENST00000504627 ADAMTS8Q9UP79 889 aa23.52■■□□□ 1.36
SQSTM1-209ENST00000504627 KDM2BQ8NHM5 1336 aa23.52■■□□□ 1.36
SQSTM1-209ENST00000504627 ERVV-1B6SEH8 477 aa23.51■■□□□ 1.35
SQSTM1-209ENST00000504627 SRGNP10124 158 aa23.51■■□□□ 1.35
SQSTM1-209ENST00000504627 EIF2S2P20042 333 aaKnown RBP23.51■■□□□ 1.35
SQSTM1-209ENST00000504627 STYK1Q6J9G0 422 aa23.51■■□□□ 1.35
SQSTM1-209ENST00000504627 ERBB4Q15303 1308 aa23.5■■□□□ 1.35
SQSTM1-209ENST00000504627 MAP3K15Q6ZN16 1313 aa23.5■■□□□ 1.35
SQSTM1-209ENST00000504627 TTLL7Q6ZT98 887 aa23.49■■□□□ 1.35
SQSTM1-209ENST00000504627 C16orf71Q8IYS4 520 aaPredicted RBP23.49■■□□□ 1.35
SQSTM1-209ENST00000504627 ZBTB3Q9H5J0 574 aa23.49■■□□□ 1.35
SQSTM1-209ENST00000504627 LAS1LQ9Y4W2 734 aaKnown RBP23.49■■□□□ 1.35
SQSTM1-209ENST00000504627 NFKBIEO00221 500 aa23.48■■□□□ 1.35
SQSTM1-209ENST00000504627 TOMM70O94826 608 aa23.48■■□□□ 1.35
SQSTM1-209ENST00000504627 SBF1O95248 1867 aa23.47■■□□□ 1.35
SQSTM1-209ENST00000504627 HSPA6P17066 643 aa23.47■■□□□ 1.35
SQSTM1-209ENST00000504627 PRPF40BQ6NWY9 871 aaKnown RBP23.47■■□□□ 1.35
SQSTM1-209ENST00000504627 NYXQ9GZU5 481 aa23.47■■□□□ 1.35
SQSTM1-209ENST00000504627 ZC3H4Q9UPT8 1303 aaKnown RBP23.47■■□□□ 1.35
SQSTM1-209ENST00000504627 COL11A2P13942 1736 aaPredicted RBP23.47■■□□□ 1.35
SQSTM1-209ENST00000504627 NPR1P16066 1061 aa23.46■■□□□ 1.35
SQSTM1-209ENST00000504627 GPTP24298 496 aa23.45■■□□□ 1.34
SQSTM1-209ENST00000504627 PRELPP51888 382 aa23.45■■□□□ 1.34
SQSTM1-209ENST00000504627 SOGA3Q5TF21 947 aa23.45■■□□□ 1.34
SQSTM1-209ENST00000504627 RRAGCQ9HB90 399 aa23.45■■□□□ 1.34
SQSTM1-209ENST00000504627 TRIM35Q9UPQ4 493 aa23.45■■□□□ 1.34
SQSTM1-209ENST00000504627 NECTIN2Q92692 538 aa23.44■■□□□ 1.34
SQSTM1-209ENST00000504627 TAOK3Q9H2K8 898 aa23.44■■□□□ 1.34
SQSTM1-209ENST00000504627 KLRG2A4D1S0 409 aaPredicted RBP23.43■■□□□ 1.34
SQSTM1-209ENST00000504627 CHL1O00533 1208 aa23.43■■□□□ 1.34
SQSTM1-209ENST00000504627 GIGYF2Q6Y7W6 1299 aaKnown RBP23.43■■□□□ 1.34
SQSTM1-209ENST00000504627 NUTM1Q86Y26 1132 aa23.43■■□□□ 1.34
SQSTM1-209ENST00000504627 PDIA6Q15084 440 aa23.42■■□□□ 1.34
SQSTM1-209ENST00000504627 GLTPD2A6NH11 291 aa23.41■■□□□ 1.34
SQSTM1-209ENST00000504627 ANXA1P04083 346 aa23.41■■□□□ 1.34
SQSTM1-209ENST00000504627 ERFEQ4G0M1 354 aa23.41■■□□□ 1.34
SQSTM1-209ENST00000504627 SLX4Q8IY92 1834 aa23.4■■□□□ 1.34
SQSTM1-209ENST00000504627 ALDH1B1P30837 517 aa23.4■■□□□ 1.34
SQSTM1-209ENST00000504627 PROSER3Q2NL68 480 aa23.4■■□□□ 1.34
SQSTM1-209ENST00000504627 CCDC93Q567U6 631 aa23.4■■□□□ 1.34
SQSTM1-209ENST00000504627 DPY19L2Q6NUT2 758 aa23.4■■□□□ 1.34
SQSTM1-209ENST00000504627 RBM46Q8TBY0 533 aaKnown RBP23.4■■□□□ 1.34
SQSTM1-209ENST00000504627 NUP98P52948 1817 aa23.4■■□□□ 1.34
SQSTM1-209ENST00000504627 UBN2Q6ZU65 1347 aa23.39■■□□□ 1.34
SQSTM1-209ENST00000504627 LTBP3Q9NS15 1303 aa23.39■■□□□ 1.34
SQSTM1-209ENST00000504627 CEP350Q5VT06 3117 aa23.39■■□□□ 1.34
SQSTM1-209ENST00000504627 AIMP1Q12904 312 aaKnown RBP23.39■■□□□ 1.33
SQSTM1-209ENST00000504627 KRT24Q2M2I5 525 aa23.39■■□□□ 1.33
SQSTM1-209ENST00000504627 SUSD4Q5VX71 490 aa23.39■■□□□ 1.33
SQSTM1-209ENST00000504627 PPP1R42Q7Z4L9 355 aa23.39■■□□□ 1.33
SQSTM1-209ENST00000504627 ZNF34Q8IZ26 560 aa23.39■■□□□ 1.33
SQSTM1-209ENST00000504627 FAM9BQ8IZU0 186 aa23.39■■□□□ 1.33
SQSTM1-209ENST00000504627 CACNA1SQ13698 1873 aa23.39■■□□□ 1.33
SQSTM1-209ENST00000504627 APAF1O14727 1248 aa23.38■■□□□ 1.33
SQSTM1-209ENST00000504627 PARP10Q53GL7 1025 aa23.38■■□□□ 1.33
SQSTM1-209ENST00000504627 LRP10Q7Z4F1 713 aa23.38■■□□□ 1.33
SQSTM1-209ENST00000504627 ABCC12Q96J65 1359 aa23.38■■□□□ 1.33
SQSTM1-209ENST00000504627 CCDC88AQ3V6T2 1871 aa23.37■■□□□ 1.33
SQSTM1-209ENST00000504627 COPS6Q7L5N1 327 aa23.37■■□□□ 1.33
SQSTM1-209ENST00000504627 C7orf43Q8WVR3 580 aa23.37■■□□□ 1.33
SQSTM1-209ENST00000504627 RPGRQ92834 1020 aaKnown RBP23.37■■□□□ 1.33
SQSTM1-209ENST00000504627 CFAP44Q96MT7 982 aa23.37■■□□□ 1.33
SQSTM1-209ENST00000504627 VEGFAP15692 232 aaPredicted RBP23.36■■□□□ 1.33
SQSTM1-209ENST00000504627 HDGFL1Q5TGJ6 251 aa23.36■■□□□ 1.33
SQSTM1-209ENST00000504627 XAGE3Q8WTP9 111 aa23.36■■□□□ 1.33
SQSTM1-209ENST00000504627 DDX21Q9NR30 783 aaKnown RBP eCLIP23.36■■□□□ 1.33
SQSTM1-209ENST00000504627 FER1L6Q2WGJ9 1857 aa23.36■■□□□ 1.33
SQSTM1-209ENST00000504627 IBTKQ9P2D0 1353 aaPredicted RBP23.36■■□□□ 1.33
SQSTM1-209ENST00000504627 APLP1P51693 650 aa23.35■■□□□ 1.33
SQSTM1-209ENST00000504627 CRY2Q49AN0 593 aa23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms