RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 CWC25Q9NXE8 425 aaPredicted RBP10.49□□□□□ -0.73
SF3A1-210ENST00000498259 PDZRN3Q9UPQ7 1066 aa10.49□□□□□ -0.73
SF3A1-210ENST00000498259 UTYO14607 1347 aa10.49□□□□□ -0.73
SF3A1-210ENST00000498259 PALLDQ8WX93 1383 aa10.49□□□□□ -0.73
SF3A1-210ENST00000498259 NEURL1BA8MQ27 555 aa10.48□□□□□ -0.73
SF3A1-210ENST00000498259 NBPF26B4DH59 902 aa10.48□□□□□ -0.73
SF3A1-210ENST00000498259 RGL2O15211 777 aa10.48□□□□□ -0.73
SF3A1-210ENST00000498259 RGS3P49796 1198 aa10.48□□□□□ -0.73
SF3A1-210ENST00000498259 TRIM28Q13263 835 aaKnown RBP10.48□□□□□ -0.73
SF3A1-210ENST00000498259 NBPF14Q5TI25 921 aa10.48□□□□□ -0.73
SF3A1-210ENST00000498259 NBPF10Q6P3W6 841 aaKnown RBP10.48□□□□□ -0.73
SF3A1-210ENST00000498259 LRP10Q7Z4F1 713 aa10.48□□□□□ -0.73
SF3A1-210ENST00000498259 ERC1Q8IUD2 1116 aa10.48□□□□□ -0.73
SF3A1-210ENST00000498259 NBPF15Q8N660 670 aa10.48□□□□□ -0.73
SF3A1-210ENST00000498259 FBXO41Q8TF61 875 aa10.48□□□□□ -0.73
SF3A1-210ENST00000498259 ARXQ96QS3 562 aa10.48□□□□□ -0.73
SF3A1-210ENST00000498259 CCDC87Q9NVE4 849 aa10.48□□□□□ -0.73
SF3A1-210ENST00000498259 ZNF652Q9Y2D9 606 aa10.48□□□□□ -0.73
SF3A1-210ENST00000498259 LRRFIP2Q9Y608 721 aaKnown RBP10.48□□□□□ -0.73
SF3A1-210ENST00000498259 TOGARAM1Q9Y4F4 1720 aa10.47□□□□□ -0.73
SF3A1-210ENST00000498259 ITGB4P16144 1822 aa10.47□□□□□ -0.73
SF3A1-210ENST00000498259 SRGAP3O43295 1099 aa10.47□□□□□ -0.73
SF3A1-210ENST00000498259 TCIRG1Q13488 830 aa10.47□□□□□ -0.73
SF3A1-210ENST00000498259 MTX1Q13505 466 aa10.47□□□□□ -0.73
SF3A1-210ENST00000498259 KRT27Q7Z3Y8 459 aa10.47□□□□□ -0.73
SF3A1-210ENST00000498259 BCL11BQ9C0K0 894 aaPredicted RBP10.47□□□□□ -0.73
SF3A1-210ENST00000498259 ZNF330Q9Y3S2 320 aaPredicted RBP10.47□□□□□ -0.73
SF3A1-210ENST00000498259 MAP3K15Q6ZN16 1313 aa10.47□□□□□ -0.73
SF3A1-210ENST00000498259 NBPF7P0C2Y1 421 aaPredicted RBP10.46□□□□□ -0.73
SF3A1-210ENST00000498259 CWF19L2Q2TBE0 894 aaKnown RBP10.46□□□□□ -0.73
SF3A1-210ENST00000498259 FAM161AQ3B820 660 aa10.46□□□□□ -0.73
SF3A1-210ENST00000498259 SIRT2Q8IXJ6 389 aa10.46□□□□□ -0.73
SF3A1-210ENST00000498259 SSH3Q8TE77 659 aa10.46□□□□□ -0.73
SF3A1-210ENST00000498259 LRRCC1Q9C099 1032 aa10.46□□□□□ -0.73
SF3A1-210ENST00000498259 COL15A1P39059 1388 aa10.46□□□□□ -0.74
SF3A1-210ENST00000498259 C5P01031 1676 aa10.46□□□□□ -0.74
SF3A1-210ENST00000498259 THSD7AQ9UPZ6 1657 aa10.46□□□□□ -0.74
SF3A1-210ENST00000498259 DOT1LQ8TEK3 1739 aa10.46□□□□□ -0.74
SF3A1-210ENST00000498259 N4BP2Q86UW6 1770 aaPredicted RBP10.46□□□□□ -0.74
SF3A1-210ENST00000498259 IGKV5-2P06315 115 aa10.45□□□□□ -0.74
SF3A1-210ENST00000498259 RXRBP28702 533 aa10.45□□□□□ -0.74
SF3A1-210ENST00000498259 OS9Q13438 667 aaPredicted RBP10.45□□□□□ -0.74
SF3A1-210ENST00000498259 RC3H1Q5TC82 1133 aaKnown RBP10.45□□□□□ -0.74
SF3A1-210ENST00000498259 GIGYF2Q6Y7W6 1299 aaKnown RBP10.45□□□□□ -0.74
SF3A1-210ENST00000498259 PPP1R42Q7Z4L9 355 aa10.45□□□□□ -0.74
SF3A1-210ENST00000498259 DZIP3Q86Y13 1208 aaKnown RBP10.45□□□□□ -0.74
SF3A1-210ENST00000498259 ZBTB3Q9H5J0 574 aa10.45□□□□□ -0.74
SF3A1-210ENST00000498259 UPF2Q9HAU5 1272 aaKnown RBP10.45□□□□□ -0.74
SF3A1-210ENST00000498259 KAT6BQ8WYB5 2073 aa10.45□□□□□ -0.74
SF3A1-210ENST00000498259 CNTNAP4Q9C0A0 1308 aa10.44□□□□□ -0.74
SF3A1-210ENST00000498259 KCNQ2O43526 872 aa10.44□□□□□ -0.74
SF3A1-210ENST00000498259 SURF6O75683 361 aaKnown RBP10.44□□□□□ -0.74
SF3A1-210ENST00000498259 CRKLP46109 303 aaKnown RBP10.44□□□□□ -0.74
SF3A1-210ENST00000498259 EIF5P55010 431 aaKnown RBP10.44□□□□□ -0.74
SF3A1-210ENST00000498259 SLC27A3Q5K4L6 730 aa10.44□□□□□ -0.74
SF3A1-210ENST00000498259 CLEC4GQ6UXB4 293 aa10.44□□□□□ -0.74
SF3A1-210ENST00000498259 KIF1BPQ96EK5 621 aa10.44□□□□□ -0.74
SF3A1-210ENST00000498259 AK7Q96M32 723 aa10.44□□□□□ -0.74
SF3A1-210ENST00000498259 LNPKQ9C0E8 428 aa10.44□□□□□ -0.74
SF3A1-210ENST00000498259 GLI3P10071 1580 aa10.43□□□□□ -0.74
SF3A1-210ENST00000498259 H7C1W4 665 aa10.43□□□□□ -0.74
SF3A1-210ENST00000498259 PDE4AP27815 886 aa10.43□□□□□ -0.74
SF3A1-210ENST00000498259 PIP4K2AP48426 406 aaPredicted RBP10.43□□□□□ -0.74
SF3A1-210ENST00000498259 G3BP1Q13283 466 aaKnown RBP eCLIP10.43□□□□□ -0.742e-6■■□□□ 14
SF3A1-210ENST00000498259 POLA2Q14181 598 aa10.43□□□□□ -0.74
SF3A1-210ENST00000498259 PARP10Q53GL7 1025 aa10.43□□□□□ -0.74
SF3A1-210ENST00000498259 CASC1Q6TDU7 716 aa10.43□□□□□ -0.74
SF3A1-210ENST00000498259 TTLL7Q6ZT98 887 aa10.43□□□□□ -0.74
SF3A1-210ENST00000498259 GPATCH3Q96I76 525 aa10.43□□□□□ -0.74
SF3A1-210ENST00000498259 ISCA1Q9BUE6 129 aa10.43□□□□□ -0.74
SF3A1-210ENST00000498259 CCNL1Q9UK58 526 aaPredicted RBP10.43□□□□□ -0.74
SF3A1-210ENST00000498259 ZBTB1Q9Y2K1 713 aa10.43□□□□□ -0.74
SF3A1-210ENST00000498259 ZNF831Q5JPB2 1677 aa10.43□□□□□ -0.74
SF3A1-210ENST00000498259 ATP5J2-PTCD1G3V325 749 aa10.42□□□□□ -0.74
SF3A1-210ENST00000498259 INTS5Q6P9B9 1019 aaKnown RBP10.42□□□□□ -0.74
SF3A1-210ENST00000498259 PPP4R3CPQ6ZMV5 832 aa10.42□□□□□ -0.74
SF3A1-210ENST00000498259 UBE3BQ7Z3V4 1068 aa10.42□□□□□ -0.74
SF3A1-210ENST00000498259 CLASRPQ8N2M8 674 aaKnown RBP10.42□□□□□ -0.74
SF3A1-210ENST00000498259 ZBTB38Q8NAP3 1195 aaPredicted RBP10.42□□□□□ -0.74
SF3A1-210ENST00000498259 SLC4A9Q96Q91 983 aa10.42□□□□□ -0.74
SF3A1-210ENST00000498259 BACH2Q9BYV9 841 aa10.42□□□□□ -0.74
SF3A1-210ENST00000498259 NOP58Q9Y2X3 529 aaKnown RBP10.42□□□□□ -0.74
SF3A1-210ENST00000498259 RTCBQ9Y3I0 505 aaKnown RBP10.42□□□□□ -0.74
SF3A1-210ENST00000498259 CICQ96RK0 1608 aaPredicted RBP10.41□□□□□ -0.74
SF3A1-210ENST00000498259 PNMA6EA0A0J9YXQ4 647 aa10.41□□□□□ -0.74
SF3A1-210ENST00000498259 PCCAP05165 728 aaPredicted RBP10.41□□□□□ -0.74
SF3A1-210ENST00000498259 BMP2KLQ5H9B9 411 aa10.41□□□□□ -0.74
SF3A1-210ENST00000498259 BICC1Q9H694 974 aaKnown RBP10.41□□□□□ -0.74
SF3A1-210ENST00000498259 TSHZ2Q9NRE2 1034 aa10.41□□□□□ -0.74
SF3A1-210ENST00000498259 FBXO3Q9UK99 471 aa10.41□□□□□ -0.74
SF3A1-210ENST00000498259 ZPR1O75312 459 aa10.4□□□□□ -0.74
SF3A1-210ENST00000498259 RPS6KA4O75676 772 aa10.4□□□□□ -0.74
SF3A1-210ENST00000498259 ITPK1Q13572 414 aa10.4□□□□□ -0.74
SF3A1-210ENST00000498259 CCDC57Q2TAC2 916 aa10.4□□□□□ -0.74
SF3A1-210ENST00000498259 RABL6Q3YEC7 729 aaPredicted RBP10.4□□□□□ -0.74
SF3A1-210ENST00000498259 SUCLG2Q96I99 432 aa10.4□□□□□ -0.74
SF3A1-210ENST00000498259 EXOC6BQ9Y2D4 811 aa10.4□□□□□ -0.74
SF3A1-210ENST00000498259 NHSQ6T4R5 1651 aa10.4□□□□□ -0.74
SF3A1-210ENST00000498259 AOX1Q06278 1338 aa10.39□□□□□ -0.75
SF3A1-210ENST00000498259 CDHR2Q9BYE9 1310 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms