RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 RRP7AQ9Y3A4 280 aaKnown RBP20.61■□□□□ 0.89
HDAC4-213ENST00000496347 NPHP1O15259 732 aa20.6■□□□□ 0.89
HDAC4-213ENST00000496347 GPBP1L1Q9HC44 474 aaPredicted RBP20.6■□□□□ 0.89
HDAC4-213ENST00000496347 CACNA1SQ13698 1873 aa20.6■□□□□ 0.89
HDAC4-213ENST00000496347 ERVV-1B6SEH8 477 aa20.58■□□□□ 0.89
HDAC4-213ENST00000496347 KIF6Q6ZMV9 814 aa20.58■□□□□ 0.89
HDAC4-213ENST00000496347 NBPF5PQ86XG9 351 aaPredicted RBP20.58■□□□□ 0.89
HDAC4-213ENST00000496347 TTLL6Q8N841 843 aa20.58■□□□□ 0.89
HDAC4-213ENST00000496347 TRIM35Q9UPQ4 493 aa20.58■□□□□ 0.89
HDAC4-213ENST00000496347 TIAM2Q8IVF5 1701 aa20.58■□□□□ 0.88
HDAC4-213ENST00000496347 IBTKQ9P2D0 1353 aaPredicted RBP20.58■□□□□ 0.88
HDAC4-213ENST00000496347 MAP3K15Q6ZN16 1313 aa20.57■□□□□ 0.88
HDAC4-213ENST00000496347 ANKRD36CQ5JPF3 1778 aa20.57■□□□□ 0.88
HDAC4-213ENST00000496347 NEUROD2Q15784 382 aa20.57■□□□□ 0.88
HDAC4-213ENST00000496347 NIP7Q9Y221 180 aaKnown RBP eCLIP20.57■□□□□ 0.88
HDAC4-213ENST00000496347 FER1L6Q2WGJ9 1857 aa20.56■□□□□ 0.88
HDAC4-213ENST00000496347 C1QTNF8P60827 252 aa20.56■□□□□ 0.88
HDAC4-213ENST00000496347 TNRC6CQ9HCJ0 1690 aaKnown RBP20.56■□□□□ 0.88
HDAC4-213ENST00000496347 CHL1O00533 1208 aa20.55■□□□□ 0.88
HDAC4-213ENST00000496347 ZC3H4Q9UPT8 1303 aaKnown RBP20.54■□□□□ 0.88
HDAC4-213ENST00000496347 RIC1Q4ADV7 1423 aa20.54■□□□□ 0.88
HDAC4-213ENST00000496347 ZNF316A6NFI3 1004 aaPredicted RBP20.54■□□□□ 0.88
HDAC4-213ENST00000496347 MYL6BP14649 208 aa20.54■□□□□ 0.88
HDAC4-213ENST00000496347 SLX4Q8IY92 1834 aa20.53■□□□□ 0.88
HDAC4-213ENST00000496347 HOXB7P09629 217 aa20.53■□□□□ 0.88
HDAC4-213ENST00000496347 HLFQ16534 295 aa20.53■□□□□ 0.88
HDAC4-213ENST00000496347 C9orf131Q5VYM1 1079 aa20.53■□□□□ 0.88
HDAC4-213ENST00000496347 STYK1Q6J9G0 422 aa20.53■□□□□ 0.88
HDAC4-213ENST00000496347 TPTE2Q6XPS3 522 aa20.53■□□□□ 0.88
HDAC4-213ENST00000496347 ZNF526Q8TF50 670 aaPredicted RBP20.53■□□□□ 0.88
HDAC4-213ENST00000496347 CEP350Q5VT06 3117 aa20.53■□□□□ 0.88
HDAC4-213ENST00000496347 DICER1Q9UPY3 1922 aaKnown RBP20.53■□□□□ 0.88
HDAC4-213ENST00000496347 CCDC88AQ3V6T2 1871 aa20.52■□□□□ 0.88
HDAC4-213ENST00000496347 SRGNP10124 158 aa20.52■□□□□ 0.88
HDAC4-213ENST00000496347 CALD1Q05682 793 aaKnown RBP20.52■□□□□ 0.88
HDAC4-213ENST00000496347 LRP10Q7Z4F1 713 aa20.52■□□□□ 0.88
HDAC4-213ENST00000496347 CCDC24Q8N4L8 307 aa20.52■□□□□ 0.88
HDAC4-213ENST00000496347 CNKSR1Q969H4 720 aa20.52■□□□□ 0.88
HDAC4-213ENST00000496347 NYXQ9GZU5 481 aa20.52■□□□□ 0.88
HDAC4-213ENST00000496347 TTLL7Q6ZT98 887 aa20.51■□□□□ 0.87
HDAC4-213ENST00000496347 NGEFQ8N5V2 710 aa20.51■□□□□ 0.87
HDAC4-213ENST00000496347 ZNF622Q969S3 477 aaKnown RBP eCLIP20.51■□□□□ 0.87
HDAC4-213ENST00000496347 MASTLQ96GX5 879 aa20.51■□□□□ 0.87
HDAC4-213ENST00000496347 CFAP44Q96MT7 982 aa20.51■□□□□ 0.87
HDAC4-213ENST00000496347 RNF181Q9P0P0 153 aa20.51■□□□□ 0.87
HDAC4-213ENST00000496347 KLRG2A4D1S0 409 aaPredicted RBP20.5■□□□□ 0.87
HDAC4-213ENST00000496347 PDIA6Q15084 440 aa20.5■□□□□ 0.87
HDAC4-213ENST00000496347 ZBTB3Q9H5J0 574 aa20.5■□□□□ 0.87
HDAC4-213ENST00000496347 ABCC12Q96J65 1359 aa20.49■□□□□ 0.87
HDAC4-213ENST00000496347 APAF1O14727 1248 aa20.49■□□□□ 0.87
HDAC4-213ENST00000496347 EIF2S2P20042 333 aaKnown RBP20.49■□□□□ 0.87
HDAC4-213ENST00000496347 LMNB1P20700 586 aa20.49■□□□□ 0.87
HDAC4-213ENST00000496347 RASSF7Q02833 373 aa20.49■□□□□ 0.87
HDAC4-213ENST00000496347 SOGA3Q5TF21 947 aa20.49■□□□□ 0.87
HDAC4-213ENST00000496347 PRPF40BQ6NWY9 871 aaKnown RBP20.49■□□□□ 0.87
HDAC4-213ENST00000496347 LAS1LQ9Y4W2 734 aaKnown RBP20.49■□□□□ 0.87
HDAC4-213ENST00000496347 NPR1P16066 1061 aa20.48■□□□□ 0.87
HDAC4-213ENST00000496347 PROSER3Q2NL68 480 aa20.48■□□□□ 0.87
HDAC4-213ENST00000496347 GIGYF2Q6Y7W6 1299 aaKnown RBP20.48■□□□□ 0.87
HDAC4-213ENST00000496347 IFT57Q9NWB7 429 aa20.48■□□□□ 0.87
HDAC4-213ENST00000496347 UBN2Q6ZU65 1347 aa20.48■□□□□ 0.87
HDAC4-213ENST00000496347 LTBP3Q9NS15 1303 aa20.48■□□□□ 0.87
HDAC4-213ENST00000496347 NFKBIEO00221 500 aa20.47■□□□□ 0.87
HDAC4-213ENST00000496347 ANP32CO43423 234 aa20.47■□□□□ 0.87
HDAC4-213ENST00000496347 DDX21Q9NR30 783 aaKnown RBP eCLIP20.47■□□□□ 0.87
HDAC4-213ENST00000496347 ZNF853P0CG23 659 aa20.46■□□□□ 0.87
HDAC4-213ENST00000496347 GTF2E1P29083 439 aaPredicted RBP20.46■□□□□ 0.87
HDAC4-213ENST00000496347 KRT24Q2M2I5 525 aa20.46■□□□□ 0.87
HDAC4-213ENST00000496347 PARP10Q53GL7 1025 aa20.46■□□□□ 0.87
HDAC4-213ENST00000496347 MBIPQ9NS73 344 aa20.46■□□□□ 0.87
HDAC4-213ENST00000496347 KDM2BQ8NHM5 1336 aa20.46■□□□□ 0.87
HDAC4-213ENST00000496347 KIF3CO14782 793 aa20.45■□□□□ 0.86
HDAC4-213ENST00000496347 GNAI1P63096 354 aa20.45■□□□□ 0.86
HDAC4-213ENST00000496347 CRY2Q49AN0 593 aa20.45■□□□□ 0.86
HDAC4-213ENST00000496347 HDGFL1Q5TGJ6 251 aa20.45■□□□□ 0.86
HDAC4-213ENST00000496347 ZNF34Q8IZ26 560 aa20.45■□□□□ 0.86
HDAC4-213ENST00000496347 RNF123Q5XPI4 1314 aa20.45■□□□□ 0.86
HDAC4-213ENST00000496347 FAM177BA6PVY3 158 aa20.44■□□□□ 0.86
HDAC4-213ENST00000496347 C21orf2O43822 256 aa20.44■□□□□ 0.86
HDAC4-213ENST00000496347 GPTP24298 496 aa20.44■□□□□ 0.86
HDAC4-213ENST00000496347 HSP90AB3PQ58FF7 597 aa20.44■□□□□ 0.86
HDAC4-213ENST00000496347 TAOK3Q9H2K8 898 aa20.44■□□□□ 0.86
HDAC4-213ENST00000496347 NTSR2O95665 410 aa20.43■□□□□ 0.86
HDAC4-213ENST00000496347 ANXA1P04083 346 aa20.43■□□□□ 0.86
HDAC4-213ENST00000496347 CCDC184Q52MB2 194 aa20.43■□□□□ 0.86
HDAC4-213ENST00000496347 MRS2Q9HD23 443 aa20.43■□□□□ 0.86
HDAC4-213ENST00000496347 CHPF2Q9P2E5 772 aa20.43■□□□□ 0.86
HDAC4-213ENST00000496347 DBF4Q9UBU7 674 aaPredicted RBP20.43■□□□□ 0.86
HDAC4-213ENST00000496347 LAMB2P55268 1798 aa20.42■□□□□ 0.86
HDAC4-213ENST00000496347 SENP3-EIF4A1A0A087X0R7 540 aa20.42■□□□□ 0.86
HDAC4-213ENST00000496347 DUSP27Q5VZP5 1158 aa20.42■□□□□ 0.86
HDAC4-213ENST00000496347 PPP1R42Q7Z4L9 355 aa20.42■□□□□ 0.86
HDAC4-213ENST00000496347 NUTM1Q86Y26 1132 aa20.42■□□□□ 0.86
HDAC4-213ENST00000496347 XAGE3Q8WTP9 111 aa20.42■□□□□ 0.86
HDAC4-213ENST00000496347 NECTIN2Q92692 538 aa20.42■□□□□ 0.86
HDAC4-213ENST00000496347 PRELPP51888 382 aa20.41■□□□□ 0.86
HDAC4-213ENST00000496347 CCDC27Q2M243 656 aa20.41■□□□□ 0.86
HDAC4-213ENST00000496347 ERFEQ4G0M1 354 aa20.41■□□□□ 0.86
HDAC4-213ENST00000496347 CCDC93Q567U6 631 aa20.41■□□□□ 0.86
HDAC4-213ENST00000496347 SUSD4Q5VX71 490 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms