RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 NGEFQ8N5V2 710 aa19.71■□□□□ 0.75
USP39-217ENST00000491659 ADCY9O60503 1353 aa19.7■□□□□ 0.74
USP39-217ENST00000491659 H0YIN7 160 aa19.7■□□□□ 0.74
USP39-217ENST00000491659 APAF1O14727 1248 aa19.7■□□□□ 0.74
USP39-217ENST00000491659 MYL6BP14649 208 aa19.7■□□□□ 0.74
USP39-217ENST00000491659 PDE6BP35913 854 aa19.7■□□□□ 0.74
USP39-217ENST00000491659 ARHGAP27Q6ZUM4 889 aa19.7■□□□□ 0.74
USP39-217ENST00000491659 PDZRN3Q9UPQ7 1066 aa19.7■□□□□ 0.74
USP39-217ENST00000491659 CACNA1SQ13698 1873 aa19.7■□□□□ 0.74
USP39-217ENST00000491659 CHL1O00533 1208 aa19.69■□□□□ 0.74
USP39-217ENST00000491659 EIF2S2P20042 333 aaKnown RBP19.69■□□□□ 0.74
USP39-217ENST00000491659 NBPF5PQ86XG9 351 aaPredicted RBP19.69■□□□□ 0.74
USP39-217ENST00000491659 BRIP1Q9BX63 1249 aa19.69■□□□□ 0.74
USP39-217ENST00000491659 NIP7Q9Y221 180 aaKnown RBP eCLIP19.69■□□□□ 0.74
USP39-217ENST00000491659 ARFGEF2Q9Y6D5 1785 aa19.69■□□□□ 0.74
USP39-217ENST00000491659 CALD1Q05682 793 aaKnown RBP19.68■□□□□ 0.74
USP39-217ENST00000491659 CCDC184Q52MB2 194 aa19.68■□□□□ 0.74
USP39-217ENST00000491659 MRS2Q9HD23 443 aa19.68■□□□□ 0.74
USP39-217ENST00000491659 MAP3K15Q6ZN16 1313 aa19.68■□□□□ 0.74
USP39-217ENST00000491659 ERVV-1B6SEH8 477 aa19.67■□□□□ 0.74
USP39-217ENST00000491659 CCDC24Q8N4L8 307 aa19.67■□□□□ 0.74
USP39-217ENST00000491659 CFAP44Q96MT7 982 aa19.67■□□□□ 0.74
USP39-217ENST00000491659 ANKRD36CQ5JPF3 1778 aa19.67■□□□□ 0.74
USP39-217ENST00000491659 HLFQ16534 295 aa19.66■□□□□ 0.74
USP39-217ENST00000491659 TTLL7Q6ZT98 887 aa19.66■□□□□ 0.74
USP39-217ENST00000491659 TTLL6Q8N841 843 aa19.66■□□□□ 0.74
USP39-217ENST00000491659 TPTE2Q6XPS3 522 aa19.64■□□□□ 0.73
USP39-217ENST00000491659 ZNF622Q969S3 477 aaKnown RBP eCLIP19.64■□□□□ 0.73
USP39-217ENST00000491659 ZBTB3Q9H5J0 574 aa19.64■□□□□ 0.73
USP39-217ENST00000491659 SBF1O95248 1867 aa19.64■□□□□ 0.73
USP39-217ENST00000491659 FAM177BA6PVY3 158 aa19.63■□□□□ 0.73
USP39-217ENST00000491659 HOXB7P09629 217 aa19.63■□□□□ 0.73
USP39-217ENST00000491659 GNAI1P63096 354 aa19.63■□□□□ 0.73
USP39-217ENST00000491659 KRT24Q2M2I5 525 aa19.63■□□□□ 0.73
USP39-217ENST00000491659 NECTIN2Q92692 538 aa19.63■□□□□ 0.73
USP39-217ENST00000491659 MBIPQ9NS73 344 aa19.63■□□□□ 0.73
USP39-217ENST00000491659 IFT57Q9NWB7 429 aa19.63■□□□□ 0.73
USP39-217ENST00000491659 TNRC6CQ9HCJ0 1690 aaKnown RBP19.62■□□□□ 0.73
USP39-217ENST00000491659 IBTKQ9P2D0 1353 aaPredicted RBP19.62■□□□□ 0.73
USP39-217ENST00000491659 ANXA1P04083 346 aa19.62■□□□□ 0.73
USP39-217ENST00000491659 GTF2E1P29083 439 aaPredicted RBP19.62■□□□□ 0.73
USP39-217ENST00000491659 PDIA6Q15084 440 aa19.62■□□□□ 0.73
USP39-217ENST00000491659 PROSER3Q2NL68 480 aa19.62■□□□□ 0.73
USP39-217ENST00000491659 HDGFL1Q5TGJ6 251 aa19.62■□□□□ 0.73
USP39-217ENST00000491659 NYXQ9GZU5 481 aa19.62■□□□□ 0.73
USP39-217ENST00000491659 GPBP1L1Q9HC44 474 aaPredicted RBP19.62■□□□□ 0.73
USP39-217ENST00000491659 LRP10Q7Z4F1 713 aa19.61■□□□□ 0.73
USP39-217ENST00000491659 ZNF526Q8TF50 670 aaPredicted RBP19.61■□□□□ 0.73
USP39-217ENST00000491659 TIAM2Q8IVF5 1701 aa19.6■□□□□ 0.73
USP39-217ENST00000491659 ZNF853P0CG23 659 aa19.6■□□□□ 0.73
USP39-217ENST00000491659 GPTP24298 496 aa19.6■□□□□ 0.73
USP39-217ENST00000491659 STYK1Q6J9G0 422 aa19.6■□□□□ 0.73
USP39-217ENST00000491659 GIGYF2Q6Y7W6 1299 aaKnown RBP19.6■□□□□ 0.73
USP39-217ENST00000491659 CNKSR1Q969H4 720 aa19.6■□□□□ 0.73
USP39-217ENST00000491659 MASTLQ96GX5 879 aa19.6■□□□□ 0.73
USP39-217ENST00000491659 DDX21Q9NR30 783 aaKnown RBP eCLIP19.6■□□□□ 0.73
USP39-217ENST00000491659 CCDC88AQ3V6T2 1871 aa19.6■□□□□ 0.73
USP39-217ENST00000491659 SLX4Q8IY92 1834 aa19.6■□□□□ 0.73
USP39-217ENST00000491659 FER1L6Q2WGJ9 1857 aa19.59■□□□□ 0.73
USP39-217ENST00000491659 SRGNP10124 158 aa19.59■□□□□ 0.73
USP39-217ENST00000491659 C9orf131Q5VYM1 1079 aa19.59■□□□□ 0.73
USP39-217ENST00000491659 DUSP27Q5VZP5 1158 aa19.59■□□□□ 0.73
USP39-217ENST00000491659 CHPF2Q9P2E5 772 aa19.59■□□□□ 0.73
USP39-217ENST00000491659 UBN2Q6ZU65 1347 aa19.58■□□□□ 0.73
USP39-217ENST00000491659 COPS6Q7L5N1 327 aa19.58■□□□□ 0.72
USP39-217ENST00000491659 XAGE3Q8WTP9 111 aa19.58■□□□□ 0.72
USP39-217ENST00000491659 RNF181Q9P0P0 153 aa19.58■□□□□ 0.72
USP39-217ENST00000491659 RIC1Q4ADV7 1423 aa19.58■□□□□ 0.72
USP39-217ENST00000491659 RASSF7Q02833 373 aa19.57■□□□□ 0.72
USP39-217ENST00000491659 AIMP1Q12904 312 aaKnown RBP19.57■□□□□ 0.72
USP39-217ENST00000491659 CCDC27Q2M243 656 aa19.57■□□□□ 0.72
USP39-217ENST00000491659 ZNF34Q8IZ26 560 aa19.57■□□□□ 0.72
USP39-217ENST00000491659 DBF4Q9UBU7 674 aaPredicted RBP19.57■□□□□ 0.72
USP39-217ENST00000491659 ABCC12Q96J65 1359 aa19.57■□□□□ 0.72
USP39-217ENST00000491659 NPR1P16066 1061 aa19.56■□□□□ 0.72
USP39-217ENST00000491659 PARP10Q53GL7 1025 aa19.56■□□□□ 0.72
USP39-217ENST00000491659 HSP90AB3PQ58FF7 597 aa19.56■□□□□ 0.72
USP39-217ENST00000491659 PRPF40BQ6NWY9 871 aaKnown RBP19.56■□□□□ 0.72
USP39-217ENST00000491659 PPP1R42Q7Z4L9 355 aa19.56■□□□□ 0.72
USP39-217ENST00000491659 NUTM1Q86Y26 1132 aa19.56■□□□□ 0.72
USP39-217ENST00000491659 ZNF219Q9P2Y4 722 aaPredicted RBP19.56■□□□□ 0.72
USP39-217ENST00000491659 KLRG2A4D1S0 409 aaPredicted RBP19.55■□□□□ 0.72
USP39-217ENST00000491659 C21orf2O43822 256 aa19.55■□□□□ 0.72
USP39-217ENST00000491659 DICER1Q9UPY3 1922 aaKnown RBP19.55■□□□□ 0.72
USP39-217ENST00000491659 SENP3-EIF4A1A0A087X0R7 540 aa19.54■□□□□ 0.72
USP39-217ENST00000491659 LMNB1P20700 586 aa19.54■□□□□ 0.72
USP39-217ENST00000491659 C1QTNF8P60827 252 aa19.54■□□□□ 0.72
USP39-217ENST00000491659 ERFEQ4G0M1 354 aa19.54■□□□□ 0.72
USP39-217ENST00000491659 SOGA3Q5TF21 947 aa19.54■□□□□ 0.72
USP39-217ENST00000491659 SUSD4Q5VX71 490 aa19.54■□□□□ 0.72
USP39-217ENST00000491659 HYPKQ9NX55 129 aa19.54■□□□□ 0.72
USP39-217ENST00000491659 NTSR2O95665 410 aa19.53■□□□□ 0.72
USP39-217ENST00000491659 NCBP3Q53F19 620 aaKnown RBP19.53■□□□□ 0.72
USP39-217ENST00000491659 WWC1Q8IX03 1113 aa19.53■□□□□ 0.72
USP39-217ENST00000491659 ZC3H4Q9UPT8 1303 aaKnown RBP19.52■□□□□ 0.72
USP39-217ENST00000491659 LAMB2P55268 1798 aa19.52■□□□□ 0.72
USP39-217ENST00000491659 NFKBIEO00221 500 aa19.52■□□□□ 0.72
USP39-217ENST00000491659 UTP14AQ9BVJ6 771 aaKnown RBP19.52■□□□□ 0.72
USP39-217ENST00000491659 CHMP4AQ9BY43 222 aa19.52■□□□□ 0.72
USP39-217ENST00000491659 RNF123Q5XPI4 1314 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms