RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 ST5P78524 1137 aa18.83■□□□□ 0.6
VARS-227ENST00000489979 STYK1Q6J9G0 422 aa18.83■□□□□ 0.6
VARS-227ENST00000489979 PRPF40BQ6NWY9 871 aaKnown RBP18.83■□□□□ 0.6
VARS-227ENST00000489979 ARFGEF2Q9Y6D5 1785 aa18.83■□□□□ 0.6
VARS-227ENST00000489979 COL3A1P02461 1466 aaPredicted RBP18.83■□□□□ 0.6
VARS-227ENST00000489979 SRGNP10124 158 aa18.82■□□□□ 0.6
VARS-227ENST00000489979 MASTLQ96GX5 879 aa18.82■□□□□ 0.6
VARS-227ENST00000489979 BCORQ6W2J9 1755 aa18.82■□□□□ 0.6
VARS-227ENST00000489979 KCNQ3O43525 872 aa18.81■□□□□ 0.6
VARS-227ENST00000489979 SOGA3Q5TF21 947 aa18.81■□□□□ 0.6
VARS-227ENST00000489979 CNGB1Q14028 1251 aaPredicted RBP18.8■□□□□ 0.6
VARS-227ENST00000489979 DZIP3Q86Y13 1208 aaKnown RBP18.8■□□□□ 0.6
VARS-227ENST00000489979 BTBD11A6QL63 1104 aa18.79■□□□□ 0.6
VARS-227ENST00000489979 PIP4K2AP48426 406 aaPredicted RBP18.79■□□□□ 0.6
VARS-227ENST00000489979 CEMIPQ8WUJ3 1361 aa18.79■□□□□ 0.6
VARS-227ENST00000489979 IQCA1LA6NCM1 817 aa18.78■□□□□ 0.6
VARS-227ENST00000489979 USP16Q9Y5T5 823 aa18.78■□□□□ 0.6
VARS-227ENST00000489979 SCN4AP35499 1836 aa18.78■□□□□ 0.6
VARS-227ENST00000489979 CCDC93Q567U6 631 aa18.77■□□□□ 0.6
VARS-227ENST00000489979 LDHDQ86WU2 507 aa18.77■□□□□ 0.6
VARS-227ENST00000489979 NBPF5PQ86XG9 351 aaPredicted RBP18.77■□□□□ 0.6
VARS-227ENST00000489979 C7orf43Q8WVR3 580 aa18.77■□□□□ 0.6
VARS-227ENST00000489979 L3MBTL3Q96JM7 780 aaPredicted RBP18.77■□□□□ 0.6
VARS-227ENST00000489979 TAF1DQ9H5J8 278 aaPredicted RBP18.77■□□□□ 0.6
VARS-227ENST00000489979 CNTNAP1P78357 1384 aa18.77■□□□□ 0.6
VARS-227ENST00000489979 PASKQ96RG2 1323 aa18.76■□□□□ 0.59
VARS-227ENST00000489979 PRAMEF22A3QJZ6 481 aa18.76■□□□□ 0.59
VARS-227ENST00000489979 CCER1Q8TC90 406 aaPredicted RBP18.76■□□□□ 0.59
VARS-227ENST00000489979 PHACTR3Q96KR7 559 aa18.76■□□□□ 0.59
VARS-227ENST00000489979 FOXN1O15353 648 aa18.75■□□□□ 0.59
VARS-227ENST00000489979 CLEC4GQ6UXB4 293 aa18.75■□□□□ 0.59
VARS-227ENST00000489979 NPR1P16066 1061 aa18.74■□□□□ 0.59
VARS-227ENST00000489979 PRKAR2BP31323 418 aa18.74■□□□□ 0.59
VARS-227ENST00000489979 ZNF277Q9NRM2 450 aaPredicted RBP18.74■□□□□ 0.59
VARS-227ENST00000489979 ZNF652Q9Y2D9 606 aa18.74■□□□□ 0.59
VARS-227ENST00000489979 ZNF541Q9H0D2 1346 aa18.74■□□□□ 0.59
VARS-227ENST00000489979 NPC1L1Q9UHC9 1359 aa18.73■□□□□ 0.59
VARS-227ENST00000489979 FKBP4Q02790 459 aaKnown RBP eCLIP18.73■□□□□ 0.59
VARS-227ENST00000489979 EAPPQ56P03 285 aaPredicted RBP18.73■□□□□ 0.59
VARS-227ENST00000489979 OLFM4Q6UX06 510 aa18.73■□□□□ 0.59
VARS-227ENST00000489979 KLRG2A4D1S0 409 aaPredicted RBP18.72■□□□□ 0.59
VARS-227ENST00000489979 TMEM88BA6NKF7 163 aa18.72■□□□□ 0.59
VARS-227ENST00000489979 ITGBL1O95965 494 aaPredicted RBP18.72■□□□□ 0.59
VARS-227ENST00000489979 SNRPA1P09661 255 aaKnown RBP18.72■□□□□ 0.59
VARS-227ENST00000489979 VEGFBP49765 207 aa18.72■□□□□ 0.59
VARS-227ENST00000489979 RSPH6AQ9H0K4 717 aa18.72■□□□□ 0.59
VARS-227ENST00000489979 NIP7Q9Y221 180 aaKnown RBP eCLIP18.72■□□□□ 0.59
VARS-227ENST00000489979 FAM177BA6PVY3 158 aa18.71■□□□□ 0.59
VARS-227ENST00000489979 TPTE2Q6XPS3 522 aa18.71■□□□□ 0.59
VARS-227ENST00000489979 AIDAQ96BJ3 306 aa18.71■□□□□ 0.59
VARS-227ENST00000489979 PRDM10Q9NQV6 1147 aa18.71■□□□□ 0.59
VARS-227ENST00000489979 HACL1Q9UJ83 578 aa18.71■□□□□ 0.59
VARS-227ENST00000489979 CLEC11AQ9Y240 323 aa18.71■□□□□ 0.59
VARS-227ENST00000489979 CTCFP49711 727 aaPredicted RBP18.7■□□□□ 0.58
VARS-227ENST00000489979 RTKN2Q8IZC4 609 aa18.7■□□□□ 0.58
VARS-227ENST00000489979 ADAMTSL1Q8N6G6 1762 aa18.69■□□□□ 0.58
VARS-227ENST00000489979 NBPF26B4DH59 902 aa18.69■□□□□ 0.58
VARS-227ENST00000489979 EPHX2P34913 555 aa18.69■□□□□ 0.58
VARS-227ENST00000489979 NBPF10Q6P3W6 841 aaKnown RBP18.69■□□□□ 0.58
VARS-227ENST00000489979 MCM10Q7L590 875 aa18.69■□□□□ 0.58
VARS-227ENST00000489979 NBPF15Q8N660 670 aa18.69■□□□□ 0.58
VARS-227ENST00000489979 IARSP41252 1262 aaKnown RBP18.68■□□□□ 0.58
VARS-227ENST00000489979 SYNE4Q8N205 404 aa18.68■□□□□ 0.58
VARS-227ENST00000489979 RTF1Q92541 710 aaKnown RBP18.68■□□□□ 0.58
VARS-227ENST00000489979 CFAP53Q96M91 514 aa18.68■□□□□ 0.58
VARS-227ENST00000489979 RNF123Q5XPI4 1314 aa18.68■□□□□ 0.58
VARS-227ENST00000489979 FZD9O00144 591 aa18.67■□□□□ 0.58
VARS-227ENST00000489979 RGL2O15211 777 aa18.67■□□□□ 0.58
VARS-227ENST00000489979 ALDH1B1P30837 517 aa18.67■□□□□ 0.58
VARS-227ENST00000489979 HLFQ16534 295 aa18.67■□□□□ 0.58
VARS-227ENST00000489979 MAP1SQ66K74 1059 aaPredicted RBP18.67■□□□□ 0.58
VARS-227ENST00000489979 WBP1LQ9NX94 342 aa18.67■□□□□ 0.58
VARS-227ENST00000489979 DCTN1Q14203 1278 aa18.66■□□□□ 0.58
VARS-227ENST00000489979 PNMA8AQ86V59 439 aaPredicted RBP18.66■□□□□ 0.58
VARS-227ENST00000489979 CNTROBQ8N137 903 aa18.66■□□□□ 0.58
VARS-227ENST00000489979 GTF2E1P29083 439 aaPredicted RBP18.65■□□□□ 0.58
VARS-227ENST00000489979 LBX1P52954 281 aa18.65■□□□□ 0.58
VARS-227ENST00000489979 NUDCQ9Y266 331 aa18.65■□□□□ 0.58
VARS-227ENST00000489979 RASSF10A6NK89 507 aa18.64■□□□□ 0.57
VARS-227ENST00000489979 U2AF1L5P0DN76 240 aaPredicted RBP18.64■□□□□ 0.57
VARS-227ENST00000489979 U2AF1Q01081 240 aaKnown RBP eCLIP18.64■□□□□ 0.57
VARS-227ENST00000489979 DEFB115Q30KQ5 88 aa18.64■□□□□ 0.57
VARS-227ENST00000489979 GPC2Q8N158 579 aa18.64■□□□□ 0.57
VARS-227ENST00000489979 JDP2Q8WYK2 163 aa18.63■□□□□ 0.57
VARS-227ENST00000489979 PSMD1Q99460 953 aa18.63■□□□□ 0.57
VARS-227ENST00000489979 NUTM1Q86Y26 1132 aa18.62■□□□□ 0.57
VARS-227ENST00000489979 ABCC12Q96J65 1359 aa18.62■□□□□ 0.57
VARS-227ENST00000489979 SNED1Q8TER0 1413 aa18.62■□□□□ 0.57
VARS-227ENST00000489979 LAMB4A4D0S4 1761 aa18.61■□□□□ 0.57
VARS-227ENST00000489979 WDR33Q9C0J8 1336 aaKnown RBP18.61■□□□□ 0.57
VARS-227ENST00000489979 HTATSF1O43719 755 aaKnown RBP18.61■□□□□ 0.57
VARS-227ENST00000489979 HSPA8P11142 646 aaKnown RBP18.61■□□□□ 0.57
VARS-227ENST00000489979 TAF7Q15545 349 aaPredicted RBP18.61■□□□□ 0.57
VARS-227ENST00000489979 CRY2Q49AN0 593 aa18.61■□□□□ 0.57
VARS-227ENST00000489979 NGEFQ8N5V2 710 aa18.61■□□□□ 0.57
VARS-227ENST00000489979 NYXQ9GZU5 481 aa18.61■□□□□ 0.57
VARS-227ENST00000489979 MIS18AQ9NYP9 233 aa18.61■□□□□ 0.57
VARS-227ENST00000489979 ABT1Q9ULW3 272 aaKnown RBP18.61■□□□□ 0.57
VARS-227ENST00000489979 GJA3Q9Y6H8 435 aa18.61■□□□□ 0.57
VARS-227ENST00000489979 NUP98P52948 1817 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms