RNA–Protein interactions for RNA: ENST00000488228.1

UBE4B-210, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-210ENST00000488228 SGIP1Q9BQI5 828 aa14.25□□□□□ -0.13
UBE4B-210ENST00000488228 DDX21Q9NR30 783 aaKnown RBP eCLIP14.25□□□□□ -0.13
UBE4B-210ENST00000488228 TRMT2AQ8IZ69 625 aaKnown RBP14.24□□□□□ -0.13
UBE4B-210ENST00000488228 ZBTB3Q9H5J0 574 aa14.24□□□□□ -0.13
UBE4B-210ENST00000488228 DBF4Q9UBU7 674 aaPredicted RBP14.24□□□□□ -0.13
UBE4B-210ENST00000488228 N4BP2Q86UW6 1770 aaPredicted RBP14.24□□□□□ -0.13
UBE4B-210ENST00000488228 COL11A2P13942 1736 aaPredicted RBP14.24□□□□□ -0.13
UBE4B-210ENST00000488228 VAMP4O75379 141 aa14.23□□□□□ -0.13
UBE4B-210ENST00000488228 CCDC30Q5VVM6 783 aa14.23□□□□□ -0.13
UBE4B-210ENST00000488228 KIF6Q6ZMV9 814 aa14.23□□□□□ -0.13
UBE4B-210ENST00000488228 XAGE3Q8WTP9 111 aa14.23□□□□□ -0.13
UBE4B-210ENST00000488228 TNRC6CQ9HCJ0 1690 aaKnown RBP14.23□□□□□ -0.13
UBE4B-210ENST00000488228 MAP3K15Q6ZN16 1313 aa14.22□□□□□ -0.13
UBE4B-210ENST00000488228 MMP10P09238 476 aa14.22□□□□□ -0.13
UBE4B-210ENST00000488228 POLD1P28340 1107 aa14.22□□□□□ -0.13
UBE4B-210ENST00000488228 DDR1Q08345 913 aa14.22□□□□□ -0.13
UBE4B-210ENST00000488228 AIMP1Q12904 312 aaKnown RBP14.22□□□□□ -0.13
UBE4B-210ENST00000488228 STK31Q9BXU1 1019 aa14.22□□□□□ -0.13
UBE4B-210ENST00000488228 CACNA1SQ13698 1873 aa14.22□□□□□ -0.13
UBE4B-210ENST00000488228 LAMB2P55268 1798 aa14.22□□□□□ -0.13
UBE4B-210ENST00000488228 DLEC1Q9Y238 1755 aa14.22□□□□□ -0.13
UBE4B-210ENST00000488228 HLFQ16534 295 aa14.21□□□□□ -0.13
UBE4B-210ENST00000488228 BICDL1Q6ZP65 573 aa14.21□□□□□ -0.13
UBE4B-210ENST00000488228 COPS6Q7L5N1 327 aa14.21□□□□□ -0.13
UBE4B-210ENST00000488228 PHAXQ9H814 394 aaKnown RBP14.21□□□□□ -0.13
UBE4B-210ENST00000488228 HYPKQ9NX55 129 aa14.21□□□□□ -0.13
UBE4B-210ENST00000488228 ATP10DQ9P241 1426 aa14.21□□□□□ -0.13
UBE4B-210ENST00000488228 NFIXQ14938 502 aa14.2□□□□□ -0.14
UBE4B-210ENST00000488228 TBC1D9BQ66K14 1250 aa14.2□□□□□ -0.14
UBE4B-210ENST00000488228 G2E3Q7L622 706 aa14.2□□□□□ -0.14
UBE4B-210ENST00000488228 NLGN1Q8N2Q7 840 aa14.2□□□□□ -0.14
UBE4B-210ENST00000488228 C10orf71Q711Q0 1435 aa14.2□□□□□ -0.14
UBE4B-210ENST00000488228 BRCA1P38398 1863 aaKnown RBP14.2□□□□□ -0.14
UBE4B-210ENST00000488228 DDX60Q8IY21 1712 aaKnown RBP14.19□□□□□ -0.14
UBE4B-210ENST00000488228 KLHL34Q8N239 644 aa14.19□□□□□ -0.14
UBE4B-210ENST00000488228 PPP1R1BQ9UD71 204 aaPredicted RBP14.19□□□□□ -0.14
UBE4B-210ENST00000488228 ZNF652Q9Y2D9 606 aa14.19□□□□□ -0.14
UBE4B-210ENST00000488228 CARMIL3Q8ND23 1372 aa14.19□□□□□ -0.14
UBE4B-210ENST00000488228 POLRMTO00411 1230 aaKnown RBP14.18□□□□□ -0.14
UBE4B-210ENST00000488228 SLC4A2P04920 1241 aa14.18□□□□□ -0.14
UBE4B-210ENST00000488228 BCL2L13Q9BXK5 485 aa14.18□□□□□ -0.14
UBE4B-210ENST00000488228 ADCY9O60503 1353 aa14.18□□□□□ -0.14
UBE4B-210ENST00000488228 ERVV-1B6SEH8 477 aa14.17□□□□□ -0.14
UBE4B-210ENST00000488228 GPTP24298 496 aa14.17□□□□□ -0.14
UBE4B-210ENST00000488228 CHMP4AQ9BY43 222 aa14.17□□□□□ -0.14
UBE4B-210ENST00000488228 PARP3Q9Y6F1 533 aa14.17□□□□□ -0.14
UBE4B-210ENST00000488228 UBN2Q6ZU65 1347 aa14.16□□□□□ -0.14
UBE4B-210ENST00000488228 TM4SF1P30408 202 aa14.16□□□□□ -0.14
UBE4B-210ENST00000488228 FLIIQ13045 1269 aa14.16□□□□□ -0.14
UBE4B-210ENST00000488228 PLBD2Q8NHP8 589 aa14.16□□□□□ -0.14
UBE4B-210ENST00000488228 SSH1Q8WYL5 1049 aa14.16□□□□□ -0.14
UBE4B-210ENST00000488228 NIP7Q9Y221 180 aaKnown RBP eCLIP14.16□□□□□ -0.14
UBE4B-210ENST00000488228 MYH3P11055 1940 aa14.15□□□□□ -0.14
UBE4B-210ENST00000488228 FAM177BA6PVY3 158 aa14.15□□□□□ -0.14
UBE4B-210ENST00000488228 RGL2O15211 777 aa14.15□□□□□ -0.14
UBE4B-210ENST00000488228 CLEC4GQ6UXB4 293 aa14.15□□□□□ -0.14
UBE4B-210ENST00000488228 GIGYF2Q6Y7W6 1299 aaKnown RBP14.15□□□□□ -0.14
UBE4B-210ENST00000488228 ANKRD13DQ6ZTN6 518 aa14.15□□□□□ -0.14
UBE4B-210ENST00000488228 ZNF428Q96B54 188 aa14.15□□□□□ -0.14
UBE4B-210ENST00000488228 FHDC1Q9C0D6 1143 aaPredicted RBP14.15□□□□□ -0.14
UBE4B-210ENST00000488228 SMC4Q9NTJ3 1288 aa14.15□□□□□ -0.14
UBE4B-210ENST00000488228 ABCC12Q96J65 1359 aa14.14□□□□□ -0.15
UBE4B-210ENST00000488228 SERPINB2P05120 415 aa14.14□□□□□ -0.15
UBE4B-210ENST00000488228 CT47B1P0C2W7 299 aaPredicted RBP14.14□□□□□ -0.15
UBE4B-210ENST00000488228 FKBP5Q13451 457 aaPredicted RBP14.14□□□□□ -0.15
UBE4B-210ENST00000488228 CCDC24Q8N4L8 307 aa14.14□□□□□ -0.15
UBE4B-210ENST00000488228 MRPL50Q8N5N7 158 aaKnown RBP14.14□□□□□ -0.15
UBE4B-210ENST00000488228 SETDB2Q96T68 719 aa14.14□□□□□ -0.15
UBE4B-210ENST00000488228 PXDNLA1KZ92 1463 aa14.13□□□□□ -0.15
UBE4B-210ENST00000488228 IBTKQ9P2D0 1353 aaPredicted RBP14.13□□□□□ -0.15
UBE4B-210ENST00000488228 DDX58O95786 925 aaKnown RBP14.13□□□□□ -0.15
UBE4B-210ENST00000488228 RIC3Q7Z5B4 369 aa14.13□□□□□ -0.15
UBE4B-210ENST00000488228 ZNF34Q8IZ26 560 aa14.13□□□□□ -0.15
UBE4B-210ENST00000488228 CNBD1Q8NA66 436 aa14.13□□□□□ -0.15
UBE4B-210ENST00000488228 MAP3K2Q9Y2U5 619 aa14.13□□□□□ -0.15
UBE4B-210ENST00000488228 PI4KAP2A4QPH2 592 aa14.12□□□□□ -0.15
UBE4B-210ENST00000488228 ATP5J2-PTCD1G3V325 749 aa14.12□□□□□ -0.15
UBE4B-210ENST00000488228 RARSP54136 660 aaKnown RBP14.12□□□□□ -0.15
UBE4B-210ENST00000488228 ALDH1L2Q3SY69 923 aa14.12□□□□□ -0.15
UBE4B-210ENST00000488228 HSP90AB3PQ58FF7 597 aa14.12□□□□□ -0.15
UBE4B-210ENST00000488228 PRR5LQ6MZQ0 368 aa14.12□□□□□ -0.15
UBE4B-210ENST00000488228 NBPF5PQ86XG9 351 aaPredicted RBP14.12□□□□□ -0.15
UBE4B-210ENST00000488228 PI4KAP1Q8N8J0 262 aa14.12□□□□□ -0.15
UBE4B-210ENST00000488228 NLGN2Q8NFZ4 835 aa14.12□□□□□ -0.15
UBE4B-210ENST00000488228 MYD88Q99836 296 aa14.12□□□□□ -0.15
UBE4B-210ENST00000488228 SPEF2Q9C093 1822 aa14.11□□□□□ -0.15
UBE4B-210ENST00000488228 ARFGEF1Q9Y6D6 1849 aa14.11□□□□□ -0.15
UBE4B-210ENST00000488228 F6X3S4 739 aa14.11□□□□□ -0.15
UBE4B-210ENST00000488228 NPHP1O15259 732 aa14.11□□□□□ -0.15
UBE4B-210ENST00000488228 TAF1P21675 1872 aa14.11□□□□□ -0.15
UBE4B-210ENST00000488228 TCIRG1Q13488 830 aa14.11□□□□□ -0.15
UBE4B-210ENST00000488228 KSR2Q6VAB6 950 aa14.11□□□□□ -0.15
UBE4B-210ENST00000488228 NTSR2O95665 410 aa14.1□□□□□ -0.15
UBE4B-210ENST00000488228 SUSD4Q5VX71 490 aa14.1□□□□□ -0.15
UBE4B-210ENST00000488228 NLRP10Q86W26 655 aa14.1□□□□□ -0.15
UBE4B-210ENST00000488228 NUTM1Q86Y26 1132 aa14.1□□□□□ -0.15
UBE4B-210ENST00000488228 ISCA1Q9BUE6 129 aa14.1□□□□□ -0.15
UBE4B-210ENST00000488228 METTL22Q9BUU2 404 aaPredicted RBP14.1□□□□□ -0.15
UBE4B-210ENST00000488228 PARP10Q53GL7 1025 aa14.09□□□□□ -0.15
UBE4B-210ENST00000488228 DNAAF4Q8WXU2 420 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms