RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 RNF181Q9P0P0 153 aa16.01■□□□□ 0.15
SQSTM1-207ENST00000481335 ERBB4Q15303 1308 aa16■□□□□ 0.15
SQSTM1-207ENST00000481335 NPHP1O15259 732 aa16■□□□□ 0.15
SQSTM1-207ENST00000481335 HSPA6P17066 643 aa16■□□□□ 0.15
SQSTM1-207ENST00000481335 LMNB1P20700 586 aa16■□□□□ 0.15
SQSTM1-207ENST00000481335 NBPF26B4DH59 902 aa15.99■□□□□ 0.15
SQSTM1-207ENST00000481335 EIF4A1P60842 406 aaKnown RBP15.99■□□□□ 0.15
SQSTM1-207ENST00000481335 SOGA3Q5TF21 947 aa15.99■□□□□ 0.15
SQSTM1-207ENST00000481335 STYK1Q6J9G0 422 aa15.99■□□□□ 0.15
SQSTM1-207ENST00000481335 NBPF10Q6P3W6 841 aaKnown RBP15.99■□□□□ 0.15
SQSTM1-207ENST00000481335 NBPF15Q8N660 670 aa15.99■□□□□ 0.15
SQSTM1-207ENST00000481335 CNKSR1Q969H4 720 aa15.99■□□□□ 0.15
SQSTM1-207ENST00000481335 NBPF5PQ86XG9 351 aaPredicted RBP15.98■□□□□ 0.15
SQSTM1-207ENST00000481335 LTBP3Q9NS15 1303 aa15.97■□□□□ 0.15
SQSTM1-207ENST00000481335 SLX4Q8IY92 1834 aa15.97■□□□□ 0.15
SQSTM1-207ENST00000481335 ERVV-1B6SEH8 477 aa15.97■□□□□ 0.15
SQSTM1-207ENST00000481335 SRGNP10124 158 aa15.97■□□□□ 0.15
SQSTM1-207ENST00000481335 PIP4K2AP48426 406 aaPredicted RBP15.97■□□□□ 0.15
SQSTM1-207ENST00000481335 TPTE2Q6XPS3 522 aa15.97■□□□□ 0.15
SQSTM1-207ENST00000481335 MASTLQ96GX5 879 aa15.97■□□□□ 0.15
SQSTM1-207ENST00000481335 IBTKQ9P2D0 1353 aaPredicted RBP15.97■□□□□ 0.15
SQSTM1-207ENST00000481335 KLRG2A4D1S0 409 aaPredicted RBP15.96■□□□□ 0.15
SQSTM1-207ENST00000481335 RASSF7Q02833 373 aa15.96■□□□□ 0.15
SQSTM1-207ENST00000481335 DDX10Q13206 875 aaKnown RBP15.96■□□□□ 0.15
SQSTM1-207ENST00000481335 RBM46Q8TBY0 533 aaKnown RBP15.96■□□□□ 0.15
SQSTM1-207ENST00000481335 ZNF622Q969S3 477 aaKnown RBP eCLIP15.96■□□□□ 0.15
SQSTM1-207ENST00000481335 MIS18AQ9NYP9 233 aa15.96■□□□□ 0.15
SQSTM1-207ENST00000481335 NIP7Q9Y221 180 aaKnown RBP eCLIP15.96■□□□□ 0.15
SQSTM1-207ENST00000481335 RIC1Q4ADV7 1423 aa15.95■□□□□ 0.14
SQSTM1-207ENST00000481335 NFKBIEO00221 500 aa15.95■□□□□ 0.14
SQSTM1-207ENST00000481335 RIPK4P57078 832 aa15.95■□□□□ 0.14
SQSTM1-207ENST00000481335 C16orf71Q8IYS4 520 aaPredicted RBP15.95■□□□□ 0.14
SQSTM1-207ENST00000481335 NMRK2Q9NPI5 230 aa15.95■□□□□ 0.14
SQSTM1-207ENST00000481335 TSPYL4Q9UJ04 414 aa15.95■□□□□ 0.14
SQSTM1-207ENST00000481335 MAP3K15Q6ZN16 1313 aa15.94■□□□□ 0.14
SQSTM1-207ENST00000481335 TMPOP42166 694 aaKnown RBP15.94■□□□□ 0.14
SQSTM1-207ENST00000481335 KIF6Q6ZMV9 814 aa15.94■□□□□ 0.14
SQSTM1-207ENST00000481335 NYXQ9GZU5 481 aa15.94■□□□□ 0.14
SQSTM1-207ENST00000481335 WDR90Q96KV7 1748 aa15.94■□□□□ 0.14
SQSTM1-207ENST00000481335 GLTPD2A6NH11 291 aa15.93■□□□□ 0.14
SQSTM1-207ENST00000481335 NPR1P16066 1061 aa15.93■□□□□ 0.14
SQSTM1-207ENST00000481335 APLP1P51693 650 aa15.93■□□□□ 0.14
SQSTM1-207ENST00000481335 FSTL1Q12841 308 aa15.93■□□□□ 0.14
SQSTM1-207ENST00000481335 PRPF40BQ6NWY9 871 aaKnown RBP15.93■□□□□ 0.14
SQSTM1-207ENST00000481335 THUMPD2Q9BTF0 503 aaKnown RBP15.93■□□□□ 0.14
SQSTM1-207ENST00000481335 ANKRD36CQ5JPF3 1778 aa15.92■□□□□ 0.14
SQSTM1-207ENST00000481335 C21orf2O43822 256 aa15.92■□□□□ 0.14
SQSTM1-207ENST00000481335 WDR43Q15061 677 aaKnown RBP eCLIP15.92■□□□□ 0.14
SQSTM1-207ENST00000481335 TAOK3Q9H2K8 898 aa15.92■□□□□ 0.14
SQSTM1-207ENST00000481335 HLFQ16534 295 aa15.91■□□□□ 0.14
SQSTM1-207ENST00000481335 CCDC24Q8N4L8 307 aa15.91■□□□□ 0.14
SQSTM1-207ENST00000481335 RUNDC1Q96C34 613 aa15.91■□□□□ 0.14
SQSTM1-207ENST00000481335 GTF2E1P29083 439 aaPredicted RBP15.9■□□□□ 0.14
SQSTM1-207ENST00000481335 ALDH1B1P30837 517 aa15.9■□□□□ 0.14
SQSTM1-207ENST00000481335 PRELPP51888 382 aa15.9■□□□□ 0.14
SQSTM1-207ENST00000481335 CCDC93Q567U6 631 aa15.9■□□□□ 0.14
SQSTM1-207ENST00000481335 DPY19L2Q6NUT2 758 aa15.9■□□□□ 0.14
SQSTM1-207ENST00000481335 PRKRIP1Q9H875 184 aaPredicted RBP15.9■□□□□ 0.14
SQSTM1-207ENST00000481335 VEGFAP15692 232 aaPredicted RBP15.89■□□□□ 0.13
SQSTM1-207ENST00000481335 CRY2Q49AN0 593 aa15.89■□□□□ 0.13
SQSTM1-207ENST00000481335 GIGYF2Q6Y7W6 1299 aaKnown RBP15.89■□□□□ 0.13
SQSTM1-207ENST00000481335 C7orf43Q8WVR3 580 aa15.89■□□□□ 0.13
SQSTM1-207ENST00000481335 RRP7AQ9Y3A4 280 aaKnown RBP15.89■□□□□ 0.13
SQSTM1-207ENST00000481335 RNF123Q5XPI4 1314 aa15.89■□□□□ 0.13
SQSTM1-207ENST00000481335 HOXB7P09629 217 aa15.88■□□□□ 0.13
SQSTM1-207ENST00000481335 MYL6BP14649 208 aa15.88■□□□□ 0.13
SQSTM1-207ENST00000481335 ERFEQ4G0M1 354 aa15.88■□□□□ 0.13
SQSTM1-207ENST00000481335 PARP10Q53GL7 1025 aa15.88■□□□□ 0.13
SQSTM1-207ENST00000481335 SMC1BQ8NDV3 1235 aa15.88■□□□□ 0.13
SQSTM1-207ENST00000481335 RRAGCQ9HB90 399 aa15.88■□□□□ 0.13
SQSTM1-207ENST00000481335 SCN4AP35499 1836 aa15.87■□□□□ 0.13
SQSTM1-207ENST00000481335 CHL1O00533 1208 aa15.87■□□□□ 0.13
SQSTM1-207ENST00000481335 TTLL7Q6ZT98 887 aa15.87■□□□□ 0.13
SQSTM1-207ENST00000481335 LRP10Q7Z4F1 713 aa15.87■□□□□ 0.13
SQSTM1-207ENST00000481335 RTKN2Q8IZC4 609 aa15.87■□□□□ 0.13
SQSTM1-207ENST00000481335 ABCC12Q96J65 1359 aa15.87■□□□□ 0.13
SQSTM1-207ENST00000481335 PDIA6Q15084 440 aa15.86■□□□□ 0.13
SQSTM1-207ENST00000481335 GRIPAP1Q4V328 841 aa15.86■□□□□ 0.13
SQSTM1-207ENST00000481335 CC2D2BQ6DHV5 1058 aa15.86■□□□□ 0.13
SQSTM1-207ENST00000481335 PPP1R42Q7Z4L9 355 aa15.86■□□□□ 0.13
SQSTM1-207ENST00000481335 ZNF34Q8IZ26 560 aa15.86■□□□□ 0.13
SQSTM1-207ENST00000481335 NGEFQ8N5V2 710 aa15.86■□□□□ 0.13
SQSTM1-207ENST00000481335 UBN2Q6ZU65 1347 aa15.86■□□□□ 0.13
SQSTM1-207ENST00000481335 FKBP4Q02790 459 aaKnown RBP eCLIP15.85■□□□□ 0.131e-6■■□□□ 13.4
SQSTM1-207ENST00000481335 HSP90AB3PQ58FF7 597 aa15.85■□□□□ 0.13
SQSTM1-207ENST00000481335 CCDC146Q8IYE0 955 aa15.85■□□□□ 0.13
SQSTM1-207ENST00000481335 ZBTB3Q9H5J0 574 aa15.85■□□□□ 0.13
SQSTM1-207ENST00000481335 ZNF219Q9P2Y4 722 aaPredicted RBP15.85■□□□□ 0.13
SQSTM1-207ENST00000481335 ADAMTS8Q9UP79 889 aa15.85■□□□□ 0.13
SQSTM1-207ENST00000481335 TRIM35Q9UPQ4 493 aa15.85■□□□□ 0.13
SQSTM1-207ENST00000481335 FAM177BA6PVY3 158 aa15.84■□□□□ 0.13
SQSTM1-207ENST00000481335 HOXA10P31260 410 aaPredicted RBP15.84■□□□□ 0.13
SQSTM1-207ENST00000481335 DDX21Q9NR30 783 aaKnown RBP eCLIP15.84■□□□□ 0.13
SQSTM1-207ENST00000481335 SNED1Q8TER0 1413 aa15.84■□□□□ 0.13
SQSTM1-207ENST00000481335 NTSR2O95665 410 aa15.83■□□□□ 0.12
SQSTM1-207ENST00000481335 EIF2S2P20042 333 aaKnown RBP15.83■□□□□ 0.12
SQSTM1-207ENST00000481335 CALD1Q05682 793 aaKnown RBP15.83■□□□□ 0.12
SQSTM1-207ENST00000481335 NEUROD2Q15784 382 aa15.83■□□□□ 0.12
SQSTM1-207ENST00000481335 RPGRQ92834 1020 aaKnown RBP15.83■□□□□ 0.12
SQSTM1-207ENST00000481335 CFAP44Q96MT7 982 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms