RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 HOXB7P09629 217 aa20.25■□□□□ 0.83
HMGA1-206ENST00000478214 HDGFL1Q5TGJ6 251 aa20.25■□□□□ 0.83
HMGA1-206ENST00000478214 KIF6Q6ZMV9 814 aa20.25■□□□□ 0.83
HMGA1-206ENST00000478214 MAP3K15Q6ZN16 1313 aa20.25■□□□□ 0.83
HMGA1-206ENST00000478214 BCORQ6W2J9 1755 aa20.24■□□□□ 0.83
HMGA1-206ENST00000478214 RGL2O15211 777 aa20.24■□□□□ 0.83
HMGA1-206ENST00000478214 KCNA3P22001 575 aa20.24■□□□□ 0.83
HMGA1-206ENST00000478214 CHRNA5P30532 468 aa20.24■□□□□ 0.83
HMGA1-206ENST00000478214 CCDC24Q8N4L8 307 aa20.24■□□□□ 0.83
HMGA1-206ENST00000478214 ZBTB3Q9H5J0 574 aa20.24■□□□□ 0.83
HMGA1-206ENST00000478214 KIAA1551Q9HCM1 1747 aa20.24■□□□□ 0.83
HMGA1-206ENST00000478214 ERVV-1B6SEH8 477 aa20.23■□□□□ 0.83
HMGA1-206ENST00000478214 ELL2O00472 640 aaPredicted RBP20.23■□□□□ 0.83
HMGA1-206ENST00000478214 GRIN3BO60391 1043 aa20.23■□□□□ 0.83
HMGA1-206ENST00000478214 PRR5LQ6MZQ0 368 aa20.23■□□□□ 0.83
HMGA1-206ENST00000478214 TSR2Q969E8 191 aaKnown RBP20.23■□□□□ 0.83
HMGA1-206ENST00000478214 CHPF2Q9P2E5 772 aa20.23■□□□□ 0.83
HMGA1-206ENST00000478214 NIP7Q9Y221 180 aaKnown RBP eCLIP20.23■□□□□ 0.83
HMGA1-206ENST00000478214 NRXN2Q9P2S2 1712 aa20.22■□□□□ 0.83
HMGA1-206ENST00000478214 C8orf58Q8NAV2 365 aa20.22■□□□□ 0.83
HMGA1-206ENST00000478214 DDX21Q9NR30 783 aaKnown RBP eCLIP20.22■□□□□ 0.83
HMGA1-206ENST00000478214 AFDNP55196 1824 aaKnown RBP20.22■□□□□ 0.83
HMGA1-206ENST00000478214 IL16Q14005 1332 aa20.22■□□□□ 0.83
HMGA1-206ENST00000478214 CCER2I3L3R5 266 aa20.21■□□□□ 0.83
HMGA1-206ENST00000478214 YY1P25490 414 aa20.21■□□□□ 0.83
HMGA1-206ENST00000478214 CNBD1Q8NA66 436 aa20.21■□□□□ 0.83
HMGA1-206ENST00000478214 XAGE3Q8WTP9 111 aa20.21■□□□□ 0.83
HMGA1-206ENST00000478214 BCS1LQ9Y276 419 aa20.21■□□□□ 0.83
HMGA1-206ENST00000478214 N4BP2Q86UW6 1770 aaPredicted RBP20.21■□□□□ 0.83
HMGA1-206ENST00000478214 AIMP1Q12904 312 aaKnown RBP20.2■□□□□ 0.82
HMGA1-206ENST00000478214 COPS6Q7L5N1 327 aa20.2■□□□□ 0.82
HMGA1-206ENST00000478214 NBPF5PQ86XG9 351 aaPredicted RBP20.2■□□□□ 0.82
HMGA1-206ENST00000478214 FAM177BA6PVY3 158 aa20.19■□□□□ 0.82
HMGA1-206ENST00000478214 NPHP1O15259 732 aa20.19■□□□□ 0.82
HMGA1-206ENST00000478214 DIEXFQ68CQ4 756 aaKnown RBP20.19■□□□□ 0.82
HMGA1-206ENST00000478214 WDR63Q8IWG1 891 aa20.19■□□□□ 0.82
HMGA1-206ENST00000478214 PIM2Q9P1W9 311 aa20.19■□□□□ 0.82
HMGA1-206ENST00000478214 GPTP24298 496 aa20.18■□□□□ 0.82
HMGA1-206ENST00000478214 GIGYF2Q6Y7W6 1299 aaKnown RBP20.18■□□□□ 0.82
HMGA1-206ENST00000478214 C2CD5Q86YS7 1000 aa20.18■□□□□ 0.82
HMGA1-206ENST00000478214 TSPYL6Q8N831 410 aa20.18■□□□□ 0.82
HMGA1-206ENST00000478214 BRIP1Q9BX63 1249 aa20.18■□□□□ 0.82
HMGA1-206ENST00000478214 DBF4Q9UBU7 674 aaPredicted RBP20.18■□□□□ 0.82
HMGA1-206ENST00000478214 ST5P78524 1137 aa20.17■□□□□ 0.82
HMGA1-206ENST00000478214 ATP10DQ9P241 1426 aa20.17■□□□□ 0.82
HMGA1-206ENST00000478214 H0YIN7 160 aa20.16■□□□□ 0.82
HMGA1-206ENST00000478214 DALRD3Q5D0E6 543 aaKnown RBP20.16■□□□□ 0.82
HMGA1-206ENST00000478214 TPTE2Q6XPS3 522 aa20.16■□□□□ 0.82
HMGA1-206ENST00000478214 UBN2Q6ZU65 1347 aa20.16■□□□□ 0.82
HMGA1-206ENST00000478214 PDE6BP35913 854 aa20.15■□□□□ 0.82
HMGA1-206ENST00000478214 ZNF34Q8IZ26 560 aa20.15■□□□□ 0.82
HMGA1-206ENST00000478214 SPINK5Q9NQ38 1064 aaPredicted RBP20.15■□□□□ 0.82
HMGA1-206ENST00000478214 HYPKQ9NX55 129 aa20.15■□□□□ 0.82
HMGA1-206ENST00000478214 FANCIQ9NVI1 1328 aa20.15■□□□□ 0.82
HMGA1-206ENST00000478214 SUSD4Q5VX71 490 aa20.13■□□□□ 0.81
HMGA1-206ENST00000478214 MIER1Q8N108 512 aa20.13■□□□□ 0.81
HMGA1-206ENST00000478214 ANKRD31Q8N7Z5 1873 aa20.12■□□□□ 0.81
HMGA1-206ENST00000478214 NUP98P52948 1817 aa20.12■□□□□ 0.81
HMGA1-206ENST00000478214 GTF2E1P29083 439 aaPredicted RBP20.12■□□□□ 0.81
HMGA1-206ENST00000478214 TWISTNBQ3B726 338 aaPredicted RBP20.12■□□□□ 0.81
HMGA1-206ENST00000478214 CCDC30Q5VVM6 783 aa20.12■□□□□ 0.81
HMGA1-206ENST00000478214 NUTM1Q86Y26 1132 aa20.12■□□□□ 0.81
HMGA1-206ENST00000478214 NYXQ9GZU5 481 aa20.12■□□□□ 0.81
HMGA1-206ENST00000478214 PHAXQ9H814 394 aaKnown RBP20.12■□□□□ 0.81
HMGA1-206ENST00000478214 PDZRN3Q9UPQ7 1066 aa20.12■□□□□ 0.81
HMGA1-206ENST00000478214 BRCA1P38398 1863 aaKnown RBP20.11■□□□□ 0.81
HMGA1-206ENST00000478214 ZNF521Q96K83 1311 aa20.11■□□□□ 0.81
HMGA1-206ENST00000478214 PARP10Q53GL7 1025 aa20.11■□□□□ 0.81
HMGA1-206ENST00000478214 ANKRD13DQ6ZTN6 518 aa20.11■□□□□ 0.81
HMGA1-206ENST00000478214 ARHGAP27Q6ZUM4 889 aa20.11■□□□□ 0.81
HMGA1-206ENST00000478214 TTLL6Q8N841 843 aa20.11■□□□□ 0.81
HMGA1-206ENST00000478214 PLBD2Q8NHP8 589 aa20.11■□□□□ 0.81
HMGA1-206ENST00000478214 ZNF622Q969S3 477 aaKnown RBP eCLIP20.11■□□□□ 0.81
HMGA1-206ENST00000478214 TCERG1O14776 1098 aaKnown RBP20.1■□□□□ 0.81
HMGA1-206ENST00000478214 GOLGA2Q08379 1002 aa20.1■□□□□ 0.81
HMGA1-206ENST00000478214 TCIRG1Q13488 830 aa20.1■□□□□ 0.81
HMGA1-206ENST00000478214 ERFEQ4G0M1 354 aa20.1■□□□□ 0.81
HMGA1-206ENST00000478214 HSP90AB3PQ58FF7 597 aa20.1■□□□□ 0.81
HMGA1-206ENST00000478214 CHMP4AQ9BY43 222 aa20.1■□□□□ 0.81
HMGA1-206ENST00000478214 ABCC12Q96J65 1359 aa20.09■□□□□ 0.81
HMGA1-206ENST00000478214 NTSR2O95665 410 aa20.09■□□□□ 0.81
HMGA1-206ENST00000478214 SRGNP10124 158 aa20.09■□□□□ 0.81
HMGA1-206ENST00000478214 EXOSC9Q06265 439 aaKnown RBP20.09■□□□□ 0.81
HMGA1-206ENST00000478214 MYH16Q9H6N6 1097 aa20.09■□□□□ 0.81
HMGA1-206ENST00000478214 IBTKQ9P2D0 1353 aaPredicted RBP20.08■□□□□ 0.81
HMGA1-206ENST00000478214 CHD4Q14839 1912 aa20.08■□□□□ 0.81
HMGA1-206ENST00000478214 KLRG2A4D1S0 409 aaPredicted RBP20.08■□□□□ 0.81
HMGA1-206ENST00000478214 PPP1R42Q7Z4L9 355 aa20.08■□□□□ 0.81
HMGA1-206ENST00000478214 NLRP10Q86W26 655 aa20.08■□□□□ 0.81
HMGA1-206ENST00000478214 STYK1Q6J9G0 422 aa20.07■□□□□ 0.8
HMGA1-206ENST00000478214 MASTLQ96GX5 879 aa20.07■□□□□ 0.8
HMGA1-206ENST00000478214 UTP14AQ9BVJ6 771 aaKnown RBP20.07■□□□□ 0.8
HMGA1-206ENST00000478214 COL11A2P13942 1736 aaPredicted RBP20.07■□□□□ 0.8
HMGA1-206ENST00000478214 VAMP4O75379 141 aa20.06■□□□□ 0.8
HMGA1-206ENST00000478214 RIC3Q7Z5B4 369 aa20.06■□□□□ 0.8
HMGA1-206ENST00000478214 ZNF428Q96B54 188 aa20.06■□□□□ 0.8
HMGA1-206ENST00000478214 STK31Q9BXU1 1019 aa20.06■□□□□ 0.8
HMGA1-206ENST00000478214 ATP5J2-PTCD1G3V325 749 aa20.05■□□□□ 0.8
HMGA1-206ENST00000478214 NPR1P16066 1061 aa20.05■□□□□ 0.8
HMGA1-206ENST00000478214 ZNF784Q8NCA9 323 aaPredicted RBP20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms