RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 TTLL7Q6ZT98 887 aa18.42■□□□□ 0.54
VAMP4-203ENST00000474047 NBPF5PQ86XG9 351 aaPredicted RBP18.42■□□□□ 0.54
VAMP4-203ENST00000474047 CNBD1Q8NA66 436 aa18.42■□□□□ 0.54
VAMP4-203ENST00000474047 ZBTB3Q9H5J0 574 aa18.42■□□□□ 0.54
VAMP4-203ENST00000474047 BCS1LQ9Y276 419 aa18.42■□□□□ 0.54
VAMP4-203ENST00000474047 AFDNP55196 1824 aaKnown RBP18.41■□□□□ 0.54
VAMP4-203ENST00000474047 N4BP2Q86UW6 1770 aaPredicted RBP18.41■□□□□ 0.54
VAMP4-203ENST00000474047 ELL2O00472 640 aaPredicted RBP18.41■□□□□ 0.54
VAMP4-203ENST00000474047 RGL2O15211 777 aa18.41■□□□□ 0.54
VAMP4-203ENST00000474047 ANXA1P04083 346 aa18.41■□□□□ 0.54
VAMP4-203ENST00000474047 AIMP1Q12904 312 aaKnown RBP18.41■□□□□ 0.54
VAMP4-203ENST00000474047 HLFQ16534 295 aa18.41■□□□□ 0.54
VAMP4-203ENST00000474047 NCBP3Q53F19 620 aaKnown RBP18.41■□□□□ 0.54
VAMP4-203ENST00000474047 PIM2Q9P1W9 311 aa18.41■□□□□ 0.54
VAMP4-203ENST00000474047 BCORQ6W2J9 1755 aa18.41■□□□□ 0.54
VAMP4-203ENST00000474047 FAM177BA6PVY3 158 aa18.4■□□□□ 0.54
VAMP4-203ENST00000474047 CHRNA5P30532 468 aa18.4■□□□□ 0.54
VAMP4-203ENST00000474047 ST5P78524 1137 aa18.4■□□□□ 0.54
VAMP4-203ENST00000474047 DDX21Q9NR30 783 aaKnown RBP eCLIP18.4■□□□□ 0.54
VAMP4-203ENST00000474047 GTF2E1P29083 439 aaPredicted RBP18.4■□□□□ 0.54
VAMP4-203ENST00000474047 PDIA6Q15084 440 aa18.4■□□□□ 0.54
VAMP4-203ENST00000474047 PROSER3Q2NL68 480 aa18.4■□□□□ 0.54
VAMP4-203ENST00000474047 CHMP4AQ9BY43 222 aa18.4■□□□□ 0.54
VAMP4-203ENST00000474047 H0YIN7 160 aa18.39■□□□□ 0.53
VAMP4-203ENST00000474047 PDE6BP35913 854 aa18.39■□□□□ 0.53
VAMP4-203ENST00000474047 PRR5LQ6MZQ0 368 aa18.39■□□□□ 0.53
VAMP4-203ENST00000474047 TPTE2Q6XPS3 522 aa18.39■□□□□ 0.53
VAMP4-203ENST00000474047 C2CD5Q86YS7 1000 aa18.39■□□□□ 0.53
VAMP4-203ENST00000474047 CCDC24Q8N4L8 307 aa18.39■□□□□ 0.53
VAMP4-203ENST00000474047 CHPF2Q9P2E5 772 aa18.39■□□□□ 0.53
VAMP4-203ENST00000474047 DBF4Q9UBU7 674 aaPredicted RBP18.39■□□□□ 0.53
VAMP4-203ENST00000474047 DALRD3Q5D0E6 543 aaKnown RBP18.38■□□□□ 0.53
VAMP4-203ENST00000474047 DIEXFQ68CQ4 756 aaKnown RBP18.38■□□□□ 0.53
VAMP4-203ENST00000474047 COPS6Q7L5N1 327 aa18.38■□□□□ 0.53
VAMP4-203ENST00000474047 WDR63Q8IWG1 891 aa18.38■□□□□ 0.53
VAMP4-203ENST00000474047 TSR2Q969E8 191 aaKnown RBP18.38■□□□□ 0.53
VAMP4-203ENST00000474047 IL16Q14005 1332 aa18.38■□□□□ 0.53
VAMP4-203ENST00000474047 CCER2I3L3R5 266 aa18.37■□□□□ 0.53
VAMP4-203ENST00000474047 XAGE3Q8WTP9 111 aa18.37■□□□□ 0.53
VAMP4-203ENST00000474047 BRIP1Q9BX63 1249 aa18.37■□□□□ 0.53
VAMP4-203ENST00000474047 C8orf58Q8NAV2 365 aa18.37■□□□□ 0.53
VAMP4-203ENST00000474047 PDZRN3Q9UPQ7 1066 aa18.37■□□□□ 0.53
VAMP4-203ENST00000474047 NRXN2Q9P2S2 1712 aa18.37■□□□□ 0.53
VAMP4-203ENST00000474047 CHD4Q14839 1912 aa18.36■□□□□ 0.53
VAMP4-203ENST00000474047 KCNA3P22001 575 aa18.36■□□□□ 0.53
VAMP4-203ENST00000474047 GPTP24298 496 aa18.36■□□□□ 0.53
VAMP4-203ENST00000474047 GIGYF2Q6Y7W6 1299 aaKnown RBP18.36■□□□□ 0.53
VAMP4-203ENST00000474047 HYPKQ9NX55 129 aa18.36■□□□□ 0.53
VAMP4-203ENST00000474047 ZNF622Q969S3 477 aaKnown RBP eCLIP18.35■□□□□ 0.534e-6■□□□□ 9.9
VAMP4-203ENST00000474047 NYXQ9GZU5 481 aa18.35■□□□□ 0.53
VAMP4-203ENST00000474047 NUP98P52948 1817 aa18.35■□□□□ 0.53
VAMP4-203ENST00000474047 CCDC30Q5VVM6 783 aa18.35■□□□□ 0.53
VAMP4-203ENST00000474047 ARHGAP27Q6ZUM4 889 aa18.35■□□□□ 0.53
VAMP4-203ENST00000474047 LRP10Q7Z4F1 713 aa18.35■□□□□ 0.53
VAMP4-203ENST00000474047 KIAA1551Q9HCM1 1747 aa18.35■□□□□ 0.53
VAMP4-203ENST00000474047 HSP90AB3PQ58FF7 597 aa18.34■□□□□ 0.53
VAMP4-203ENST00000474047 TTLL6Q8N841 843 aa18.33■□□□□ 0.52
VAMP4-203ENST00000474047 GOLGA2Q08379 1002 aa18.32■□□□□ 0.52
VAMP4-203ENST00000474047 TWISTNBQ3B726 338 aaPredicted RBP18.32■□□□□ 0.52
VAMP4-203ENST00000474047 IFFO2Q5TF58 517 aa18.32■□□□□ 0.52
VAMP4-203ENST00000474047 ANKRD13DQ6ZTN6 518 aa18.32■□□□□ 0.52
VAMP4-203ENST00000474047 PPP1R42Q7Z4L9 355 aa18.32■□□□□ 0.52
VAMP4-203ENST00000474047 TSPYL6Q8N831 410 aa18.32■□□□□ 0.52
VAMP4-203ENST00000474047 STK31Q9BXU1 1019 aa18.32■□□□□ 0.52
VAMP4-203ENST00000474047 MYH16Q9H6N6 1097 aa18.32■□□□□ 0.52
VAMP4-203ENST00000474047 ATP10DQ9P241 1426 aa18.32■□□□□ 0.52
VAMP4-203ENST00000474047 PARP10Q53GL7 1025 aa18.32■□□□□ 0.52
VAMP4-203ENST00000474047 ZNF34Q8IZ26 560 aa18.32■□□□□ 0.52
VAMP4-203ENST00000474047 PLBD2Q8NHP8 589 aa18.31■□□□□ 0.52
VAMP4-203ENST00000474047 SUSD4Q5VX71 490 aa18.3■□□□□ 0.52
VAMP4-203ENST00000474047 NUTM1Q86Y26 1132 aa18.3■□□□□ 0.52
VAMP4-203ENST00000474047 FANCIQ9NVI1 1328 aa18.3■□□□□ 0.52
VAMP4-203ENST00000474047 TCIRG1Q13488 830 aa18.29■□□□□ 0.52
VAMP4-203ENST00000474047 RIC3Q7Z5B4 369 aa18.29■□□□□ 0.52
VAMP4-203ENST00000474047 UBN2Q6ZU65 1347 aa18.29■□□□□ 0.52
VAMP4-203ENST00000474047 BRCA1P38398 1863 aaKnown RBP18.29■□□□□ 0.52
VAMP4-203ENST00000474047 ERFEQ4G0M1 354 aa18.29■□□□□ 0.52
VAMP4-203ENST00000474047 CNKSR1Q969H4 720 aa18.29■□□□□ 0.52
VAMP4-203ENST00000474047 MASTLQ96GX5 879 aa18.29■□□□□ 0.52
VAMP4-203ENST00000474047 UTP14AQ9BVJ6 771 aaKnown RBP18.29■□□□□ 0.52
VAMP4-203ENST00000474047 ANKRD31Q8N7Z5 1873 aa18.28■□□□□ 0.52
VAMP4-203ENST00000474047 TCERG1O14776 1098 aaKnown RBP18.28■□□□□ 0.52
VAMP4-203ENST00000474047 DDX58O95786 925 aaKnown RBP18.28■□□□□ 0.52
VAMP4-203ENST00000474047 STYK1Q6J9G0 422 aa18.28■□□□□ 0.52
VAMP4-203ENST00000474047 MIER1Q8N108 512 aa18.28■□□□□ 0.52
VAMP4-203ENST00000474047 PHAXQ9H814 394 aaKnown RBP18.28■□□□□ 0.52
VAMP4-203ENST00000474047 SRGNP10124 158 aa18.27■□□□□ 0.52
VAMP4-203ENST00000474047 EXOSC9Q06265 439 aaKnown RBP18.27■□□□□ 0.52
VAMP4-203ENST00000474047 ZNF219Q9P2Y4 722 aaPredicted RBP18.27■□□□□ 0.52
VAMP4-203ENST00000474047 NPR1P16066 1061 aa18.26■□□□□ 0.51
VAMP4-203ENST00000474047 ARFGEF1Q9Y6D6 1849 aa18.26■□□□□ 0.51
VAMP4-203ENST00000474047 IBTKQ9P2D0 1353 aaPredicted RBP18.26■□□□□ 0.51
VAMP4-203ENST00000474047 TRMT112Q9UI30 125 aaKnown RBP18.26■□□□□ 0.51
VAMP4-203ENST00000474047 DLEC1Q9Y238 1755 aa18.25■□□□□ 0.51
VAMP4-203ENST00000474047 NTSR2O95665 410 aa18.25■□□□□ 0.51
VAMP4-203ENST00000474047 NLRP10Q86W26 655 aa18.25■□□□□ 0.51
VAMP4-203ENST00000474047 RPGRQ92834 1020 aaKnown RBP18.25■□□□□ 0.51
VAMP4-203ENST00000474047 SPINK5Q9NQ38 1064 aaPredicted RBP18.25■□□□□ 0.51
VAMP4-203ENST00000474047 ATP5J2-PTCD1G3V325 749 aa18.24■□□□□ 0.51
VAMP4-203ENST00000474047 SLC4A2P04920 1241 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms