RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 EML1O00423 815 aa8.89□□□□□ -0.99
CCDC88A-210ENST00000468534 SAMD5Q5TGI4 173 aa8.89□□□□□ -0.99
CCDC88A-210ENST00000468534 GLMNQ92990 594 aa8.89□□□□□ -0.99
CCDC88A-210ENST00000468534 KRTAP4-6Q9BYQ5 205 aa8.89□□□□□ -0.99
CCDC88A-210ENST00000468534 HCN4Q9Y3Q4 1203 aa8.89□□□□□ -0.99
CCDC88A-210ENST00000468534 SFI1A8K8P3 1242 aa8.88□□□□□ -0.99
CCDC88A-210ENST00000468534 GNB5O14775 395 aa8.88□□□□□ -0.99
CCDC88A-210ENST00000468534 EFSO43281 561 aa8.88□□□□□ -0.99
CCDC88A-210ENST00000468534 PROCP04070 461 aa8.88□□□□□ -0.99
CCDC88A-210ENST00000468534 DGKGP49619 791 aa8.88□□□□□ -0.99
CCDC88A-210ENST00000468534 ZNF468Q5VIY5 522 aaPredicted RBP8.88□□□□□ -0.99
CCDC88A-210ENST00000468534 PROSER2Q86WR7 435 aaPredicted RBP8.88□□□□□ -0.99
CCDC88A-210ENST00000468534 TSEN2Q8NCE0 465 aaKnown RBP8.88□□□□□ -0.99
CCDC88A-210ENST00000468534 CHMP3Q9Y3E7 222 aa8.88□□□□□ -0.99
CCDC88A-210ENST00000468534 RBM19Q9Y4C8 960 aaKnown RBP8.88□□□□□ -0.99
CCDC88A-210ENST00000468534 PALM3A6NDB9 673 aaPredicted RBP8.87□□□□□ -0.99
CCDC88A-210ENST00000468534 LARGE2Q8N3Y3 721 aa8.87□□□□□ -0.99
CCDC88A-210ENST00000468534 AVENQ9NQS1 362 aaPredicted RBP8.87□□□□□ -0.99
CCDC88A-210ENST00000468534 PIK3R2O00459 728 aa8.86□□□□□ -0.99
CCDC88A-210ENST00000468534 PSMA6P60900 246 aaKnown RBP8.86□□□□□ -0.99
CCDC88A-210ENST00000468534 SYT9Q86SS6 491 aa8.86□□□□□ -0.99
CCDC88A-210ENST00000468534 HSH2DQ96JZ2 352 aa8.86□□□□□ -0.99
CCDC88A-210ENST00000468534 PHACTR1Q9C0D0 580 aa8.86□□□□□ -0.99
CCDC88A-210ENST00000468534 TFIP11Q9UBB9 837 aaKnown RBP8.86□□□□□ -0.99
CCDC88A-210ENST00000468534 RASA1P20936 1047 aa8.85□□□□□ -0.99
CCDC88A-210ENST00000468534 SFSWAPQ12872 951 aaKnown RBP8.85□□□□□ -0.99
CCDC88A-210ENST00000468534 LAMC2Q13753 1193 aa8.85□□□□□ -0.99
CCDC88A-210ENST00000468534 PPP1R12BO60237 982 aaPredicted RBP8.84□□□□□ -0.99
CCDC88A-210ENST00000468534 RAB44Q7Z6P3 723 aaPredicted RBP8.84□□□□□ -0.99
CCDC88A-210ENST00000468534 ALYREFQ86V81 257 aaKnown RBP8.84□□□□□ -0.99
CCDC88A-210ENST00000468534 SIX5Q8N196 739 aa8.84□□□□□ -0.99
CCDC88A-210ENST00000468534 LGR5O75473 907 aa8.83□□□□□ -1
CCDC88A-210ENST00000468534 TMEM132AQ24JP5 1023 aa8.83□□□□□ -1
CCDC88A-210ENST00000468534 FNBP4Q8N3X1 1017 aaPredicted RBP8.83□□□□□ -1
CCDC88A-210ENST00000468534 CHMP7Q8WUX9 453 aaPredicted RBP8.83□□□□□ -1
CCDC88A-210ENST00000468534 C7orf43Q8WVR3 580 aa8.83□□□□□ -1
CCDC88A-210ENST00000468534 CEP63Q96MT8 703 aa8.83□□□□□ -1
CCDC88A-210ENST00000468534 SLC30A3Q99726 388 aa8.83□□□□□ -1
CCDC88A-210ENST00000468534 NOP53Q9NZM5 478 aaKnown RBP8.83□□□□□ -1
CCDC88A-210ENST00000468534 MAFBQ9Y5Q3 323 aaPredicted RBP8.83□□□□□ -1
CCDC88A-210ENST00000468534 GPC6Q9Y625 555 aaPredicted RBP8.83□□□□□ -1
CCDC88A-210ENST00000468534 M0R2N6 131 aa8.82□□□□□ -1
CCDC88A-210ENST00000468534 ZNF280CQ8ND82 737 aa8.82□□□□□ -1
CCDC88A-210ENST00000468534 NGLY1Q96IV0 654 aa8.82□□□□□ -1
CCDC88A-210ENST00000468534 BRD7Q9NPI1 651 aa8.82□□□□□ -1
CCDC88A-210ENST00000468534 ELOA3CA0A087WX78 387 aaPredicted RBP8.81□□□□□ -1
CCDC88A-210ENST00000468534 ELOA3DA6NLF2 546 aaPredicted RBP8.81□□□□□ -1
CCDC88A-210ENST00000468534 DKK1O94907 266 aa8.81□□□□□ -1
CCDC88A-210ENST00000468534 ALAS2P22557 587 aa8.81□□□□□ -1
CCDC88A-210ENST00000468534 ELOA3BQ3SY89 546 aa8.81□□□□□ -1
CCDC88A-210ENST00000468534 C1orf53Q5VUE5 145 aa8.81□□□□□ -1
CCDC88A-210ENST00000468534 ELOA3Q8NG57 546 aa8.81□□□□□ -1
CCDC88A-210ENST00000468534 SCG3Q8WXD2 468 aaKnown RBP8.81□□□□□ -1
CCDC88A-210ENST00000468534 CALR3Q96L12 384 aaKnown RBP8.81□□□□□ -1
CCDC88A-210ENST00000468534 C1QTNF9BB2RNN3 333 aa8.8□□□□□ -1
CCDC88A-210ENST00000468534 C21orf2O43822 256 aa8.8□□□□□ -1
CCDC88A-210ENST00000468534 ADAM23O75077 832 aa8.8□□□□□ -1
CCDC88A-210ENST00000468534 BAG6P46379 1132 aa8.8□□□□□ -1
CCDC88A-210ENST00000468534 SPEM2Q0P670 501 aa8.8□□□□□ -1
CCDC88A-210ENST00000468534 LARP1Q6PKG0 1096 aaKnown RBP8.8□□□□□ -1
CCDC88A-210ENST00000468534 TRIM11Q96F44 468 aa8.8□□□□□ -1
CCDC88A-210ENST00000468534 SUSD3Q96L08 255 aa8.8□□□□□ -1
CCDC88A-210ENST00000468534 ATAD2Q6PL18 1390 aa8.79□□□□□ -1
CCDC88A-210ENST00000468534 HIRAP54198 1017 aaPredicted RBP8.79□□□□□ -1
CCDC88A-210ENST00000468534 SEC13P55735 322 aa8.79□□□□□ -1
CCDC88A-210ENST00000468534 ALDH16A1Q8IZ83 802 aa8.79□□□□□ -1
CCDC88A-210ENST00000468534 GAS2L2Q8NHY3 880 aa8.79□□□□□ -1
CCDC88A-210ENST00000468534 HINFPQ9BQA5 517 aa8.79□□□□□ -1
CCDC88A-210ENST00000468534 PLVAPQ9BX97 442 aa8.79□□□□□ -1
CCDC88A-210ENST00000468534 ANKIB1Q9P2G1 1089 aa8.79□□□□□ -1
CCDC88A-210ENST00000468534 SIN3BO75182 1162 aa8.78□□□□□ -1
CCDC88A-210ENST00000468534 FURINP09958 794 aa8.78□□□□□ -1
CCDC88A-210ENST00000468534 CHRNA4P43681 627 aa8.78□□□□□ -1
CCDC88A-210ENST00000468534 CD163Q86VB7 1156 aa8.78□□□□□ -1
CCDC88A-210ENST00000468534 TYRO3Q06418 890 aa8.77□□□□□ -1.01
CCDC88A-210ENST00000468534 TBC1D8BQ0IIM8 1120 aa8.77□□□□□ -1.01
CCDC88A-210ENST00000468534 NEUROD1Q13562 356 aa8.77□□□□□ -1.01
CCDC88A-210ENST00000468534 CRTC2Q53ET0 693 aaPredicted RBP8.77□□□□□ -1.01
CCDC88A-210ENST00000468534 POTEAQ6S8J7 498 aa8.77□□□□□ -1.01
CCDC88A-210ENST00000468534 PPP1R12CQ9BZL4 782 aa8.77□□□□□ -1.01
CCDC88A-210ENST00000468534 KCNH4Q9UQ05 1017 aa8.77□□□□□ -1.01
CCDC88A-210ENST00000468534 K7ELQ4 463 aaPredicted RBP8.76□□□□□ -1.01
CCDC88A-210ENST00000468534 M0R082 166 aa8.76□□□□□ -1.01
CCDC88A-210ENST00000468534 DPYDQ12882 1025 aa8.76□□□□□ -1.01
CCDC88A-210ENST00000468534 ZNF417Q8TAU3 575 aa8.76□□□□□ -1.01
CCDC88A-210ENST00000468534 BHMTQ93088 406 aa8.76□□□□□ -1.01
CCDC88A-210ENST00000468534 ZNF587Q96SQ5 575 aaPredicted RBP8.76□□□□□ -1.01
CCDC88A-210ENST00000468534 C2orf49Q9BVC5 232 aaPredicted RBP8.76□□□□□ -1.01
CCDC88A-210ENST00000468534 LMOD1P29536 600 aaPredicted RBP8.75□□□□□ -1.01
CCDC88A-210ENST00000468534 ADH7P40394 386 aa8.75□□□□□ -1.01
CCDC88A-210ENST00000468534 C8orf86Q6ZUL3 223 aa8.75□□□□□ -1.01
CCDC88A-210ENST00000468534 IGFLR1Q9H665 355 aa8.75□□□□□ -1.01
CCDC88A-210ENST00000468534 ADARB2-AS1A8MUL3 147 aa8.74□□□□□ -1.01
CCDC88A-210ENST00000468534 USP17L15C9J2P7 530 aa8.74□□□□□ -1.01
CCDC88A-210ENST00000468534 USP17L10C9JJH3 530 aa8.74□□□□□ -1.01
CCDC88A-210ENST00000468534 USP17L13C9JLJ4 530 aa8.74□□□□□ -1.01
CCDC88A-210ENST00000468534 USP17L12C9JPN9 530 aa8.74□□□□□ -1.01
CCDC88A-210ENST00000468534 USP17L11C9JVI0 530 aa8.74□□□□□ -1.01
CCDC88A-210ENST00000468534 USP17L21D6R901 530 aa8.74□□□□□ -1.01
CCDC88A-210ENST00000468534 USP17L18D6R9N7 530 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms