RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 DBF4Q9UBU7 674 aaPredicted RBP22.04■■□□□ 1.12
CCDC88B-204ENST00000463837 ESYT1Q9BSJ8 1104 aa22.04■■□□□ 1.12
CCDC88B-204ENST00000463837 TFIP11Q9UBB9 837 aaKnown RBP22.04■■□□□ 1.12
CCDC88B-204ENST00000463837 TMC6Q7Z403 805 aa22.04■■□□□ 1.12
CCDC88B-204ENST00000463837 GUCY1B3Q02153 619 aa22.03■■□□□ 1.12
CCDC88B-204ENST00000463837 ZHX3Q9H4I2 956 aa22.03■■□□□ 1.12
CCDC88B-204ENST00000463837 ZNF830Q96NB3 372 aaPredicted RBP22.03■■□□□ 1.12
CCDC88B-204ENST00000463837 PUS7Q96PZ0 661 aaKnown RBP22.03■■□□□ 1.12
CCDC88B-204ENST00000463837 TAX1BP1Q86VP1 789 aa22.03■■□□□ 1.12
CCDC88B-204ENST00000463837 IFIT1P09914 478 aaKnown RBP22.03■■□□□ 1.12
CCDC88B-204ENST00000463837 PDE1AP54750 535 aa22.03■■□□□ 1.12
CCDC88B-204ENST00000463837 MRPL50Q8N5N7 158 aaKnown RBP22.03■■□□□ 1.12
CCDC88B-204ENST00000463837 DNAJC5BQ9UF47 199 aa22.03■■□□□ 1.12
CCDC88B-204ENST00000463837 WASLO00401 505 aaPredicted RBP22.02■■□□□ 1.12
CCDC88B-204ENST00000463837 USP48Q86UV5 1035 aa22.02■■□□□ 1.12
CCDC88B-204ENST00000463837 URB2Q14146 1524 aaKnown RBP22.02■■□□□ 1.12
CCDC88B-204ENST00000463837 CNNM3Q8NE01 707 aa22.02■■□□□ 1.12
CCDC88B-204ENST00000463837 ADGRL1O94910 1474 aa22.02■■□□□ 1.12
CCDC88B-204ENST00000463837 GTF2F1P35269 517 aaKnown RBP eCLIP22.02■■□□□ 1.12
CCDC88B-204ENST00000463837 INTS4Q96HW7 963 aaKnown RBP22.02■■□□□ 1.12
CCDC88B-204ENST00000463837 PPP1R1BQ9UD71 204 aaPredicted RBP22.02■■□□□ 1.11
CCDC88B-204ENST00000463837 NEFHP12036 1026 aa22.01■■□□□ 1.11
CCDC88B-204ENST00000463837 KDM2BQ8NHM5 1336 aa22.01■■□□□ 1.11
CCDC88B-204ENST00000463837 FKBP15Q5T1M5 1219 aa22.01■■□□□ 1.11
CCDC88B-204ENST00000463837 KRI1Q8N9T8 703 aaKnown RBP22.01■■□□□ 1.11
CCDC88B-204ENST00000463837 GIMAP6Q6P9H5 292 aa22■■□□□ 1.11
CCDC88B-204ENST00000463837 YEATS4O95619 227 aa22■■□□□ 1.11
CCDC88B-204ENST00000463837 KLHL10Q6JEL2 608 aa22■■□□□ 1.11
CCDC88B-204ENST00000463837 GTPBP4Q9BZE4 634 aaKnown RBP22■■□□□ 1.11
CCDC88B-204ENST00000463837 TMX1Q9H3N1 280 aa22■■□□□ 1.11
CCDC88B-204ENST00000463837 KANK3Q6NY19 840 aa22■■□□□ 1.11
CCDC88B-204ENST00000463837 NEK1Q96PY6 1258 aa22■■□□□ 1.11
CCDC88B-204ENST00000463837 PRIM1P49642 420 aaKnown RBP22■■□□□ 1.11
CCDC88B-204ENST00000463837 CCDC8Q9H0W5 538 aaPredicted RBP22■■□□□ 1.11
CCDC88B-204ENST00000463837 DUOX2Q9NRD8 1548 aa22■■□□□ 1.11
CCDC88B-204ENST00000463837 IDH1O75874 414 aaKnown RBP21.99■■□□□ 1.11
CCDC88B-204ENST00000463837 PYM1Q9BRP8 204 aaKnown RBP21.99■■□□□ 1.11
CCDC88B-204ENST00000463837 ZMYM4Q5VZL5 1548 aa21.99■■□□□ 1.11
CCDC88B-204ENST00000463837 MICALCLQ6ZW33 695 aa21.99■■□□□ 1.11
CCDC88B-204ENST00000463837 WAPLQ7Z5K2 1190 aa21.99■■□□□ 1.11
CCDC88B-204ENST00000463837 F13A1P00488 732 aa21.99■■□□□ 1.11
CCDC88B-204ENST00000463837 CCDC94Q9BW85 323 aaPredicted RBP21.98■■□□□ 1.11
CCDC88B-204ENST00000463837 RAPGEF6Q8TEU7 1601 aa21.98■■□□□ 1.11
CCDC88B-204ENST00000463837 WWC2Q6AWC2 1192 aa21.98■■□□□ 1.11
CCDC88B-204ENST00000463837 PPP1R42Q7Z4L9 355 aa21.98■■□□□ 1.11
CCDC88B-204ENST00000463837 ZNF213O14771 459 aa21.98■■□□□ 1.11
CCDC88B-204ENST00000463837 USO1O60763 962 aaKnown RBP21.98■■□□□ 1.11
CCDC88B-204ENST00000463837 SRRTQ9BXP5 876 aaKnown RBP21.97■■□□□ 1.11
CCDC88B-204ENST00000463837 DCTPP1Q9H773 170 aa21.97■■□□□ 1.11
CCDC88B-204ENST00000463837 ZBTB40Q9NUA8 1239 aa21.97■■□□□ 1.11
CCDC88B-204ENST00000463837 CNPY2Q9Y2B0 182 aa21.97■■□□□ 1.11
CCDC88B-204ENST00000463837 GOLGA8BA8MQT2 603 aa21.97■■□□□ 1.11
CCDC88B-204ENST00000463837 FGFR1OPO95684 399 aaKnown RBP21.97■■□□□ 1.11
CCDC88B-204ENST00000463837 ENOX2Q16206 610 aaKnown RBP21.97■■□□□ 1.11
CCDC88B-204ENST00000463837 TSHZ3Q63HK5 1081 aa21.97■■□□□ 1.11
CCDC88B-204ENST00000463837 RHPN1Q8TCX5 695 aa21.97■■□□□ 1.11
CCDC88B-204ENST00000463837 STARD3NLO95772 234 aa21.97■■□□□ 1.11
CCDC88B-204ENST00000463837 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.97■■□□□ 1.116e-10■■■■■ 64.9
CCDC88B-204ENST00000463837 PIP4K2BP78356 416 aa21.97■■□□□ 1.11
CCDC88B-204ENST00000463837 ANKRD18AQ8IVF6 992 aa21.97■■□□□ 1.11
CCDC88B-204ENST00000463837 TIGD1Q96MW7 591 aa21.97■■□□□ 1.11
CCDC88B-204ENST00000463837 SSRP1Q08945 709 aaKnown RBP21.96■■□□□ 1.11
CCDC88B-204ENST00000463837 PIBF1Q8WXW3 757 aa21.96■■□□□ 1.11
CCDC88B-204ENST00000463837 MYD88Q99836 296 aa21.96■■□□□ 1.11
CCDC88B-204ENST00000463837 BIN1O00499 593 aa21.96■■□□□ 1.11
CCDC88B-204ENST00000463837 TESK2Q96S53 571 aa21.96■■□□□ 1.11
CCDC88B-204ENST00000463837 NPC1L1Q9UHC9 1359 aa21.96■■□□□ 1.11
CCDC88B-204ENST00000463837 SSBP05455 408 aaKnown RBP eCLIP21.96■■□□□ 1.11
CCDC88B-204ENST00000463837 METTL24Q5JXM2 366 aa21.96■■□□□ 1.11
CCDC88B-204ENST00000463837 LRP2BPQ9P2M1 347 aa21.96■■□□□ 1.11
CCDC88B-204ENST00000463837 SPINK5Q9NQ38 1064 aaPredicted RBP21.95■■□□□ 1.11
CCDC88B-204ENST00000463837 UHRF1BP1Q6BDS2 1440 aa21.95■■□□□ 1.1
CCDC88B-204ENST00000463837 PAFAH1B1P43034 410 aa21.95■■□□□ 1.1
CCDC88B-204ENST00000463837 ANO6Q4KMQ2 910 aa21.95■■□□□ 1.1
CCDC88B-204ENST00000463837 SLC12A7Q9Y666 1083 aa21.95■■□□□ 1.1
CCDC88B-204ENST00000463837 CPLX3Q8WVH0 158 aa21.95■■□□□ 1.1
CCDC88B-204ENST00000463837 SEPT7Q16181 437 aaKnown RBP21.95■■□□□ 1.1
CCDC88B-204ENST00000463837 CCDC85AQ96PX6 553 aaPredicted RBP21.95■■□□□ 1.1
CCDC88B-204ENST00000463837 RNF41Q9H4P4 317 aaPredicted RBP21.95■■□□□ 1.1
CCDC88B-204ENST00000463837 TERF1P54274 439 aa21.94■■□□□ 1.1
CCDC88B-204ENST00000463837 CCDC186Q7Z3E2 898 aa21.94■■□□□ 1.1
CCDC88B-204ENST00000463837 NAPBQ9H115 298 aa21.94■■□□□ 1.1
CCDC88B-204ENST00000463837 COL17A1Q9UMD9 1497 aaPredicted RBP21.94■■□□□ 1.1
CCDC88B-204ENST00000463837 SKILP12757 684 aa21.94■■□□□ 1.1
CCDC88B-204ENST00000463837 ZC3H6P61129 1189 aaKnown RBP21.94■■□□□ 1.1
CCDC88B-204ENST00000463837 NUP88Q99567 741 aaPredicted RBP21.94■■□□□ 1.1
CCDC88B-204ENST00000463837 RAI14Q9P0K7 980 aa21.94■■□□□ 1.1
CCDC88B-204ENST00000463837 CCDC102BQ68D86 513 aa21.94■■□□□ 1.1
CCDC88B-204ENST00000463837 ATP8B2P98198 1209 aa21.94■■□□□ 1.1
CCDC88B-204ENST00000463837 SMARCC1Q92922 1105 aaPredicted RBP21.93■■□□□ 1.1
CCDC88B-204ENST00000463837 CCT2P78371 535 aaKnown RBP21.93■■□□□ 1.1
CCDC88B-204ENST00000463837 KCNG4Q8TDN1 519 aa21.93■■□□□ 1.1
CCDC88B-204ENST00000463837 RLBP1P12271 317 aa21.93■■□□□ 1.1
CCDC88B-204ENST00000463837 MEIS3Q99687 375 aa21.93■■□□□ 1.1
CCDC88B-204ENST00000463837 GOLGA8AA7E2F4 631 aa21.93■■□□□ 1.1
CCDC88B-204ENST00000463837 EHBP1Q8NDI1 1231 aa21.93■■□□□ 1.1
CCDC88B-204ENST00000463837 TSG101Q99816 390 aa21.93■■□□□ 1.1
CCDC88B-204ENST00000463837 CTTNBP2Q8WZ74 1663 aa21.93■■□□□ 1.1
CCDC88B-204ENST00000463837 ATP2B2Q01814 1243 aa21.93■■□□□ 1.1
CCDC88B-204ENST00000463837 GIMAP7Q8NHV1 300 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms