RNA–Protein interactions for RNA: ENST00000463004.5

RBM39-223, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 4,580 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-223	ENST00000463004	FKBP4	Q02790	459 aa	Known RBP eCLIP	14.01	□□□□□ -0.17
RBM39-223	ENST00000463004	IMMT	Q16891	758 aa	Known RBP	14.01	□□□□□ -0.17
RBM39-223	ENST00000463004	SPINK5	Q9NQ38	1064 aa	Predicted RBP	14.01	□□□□□ -0.17
RBM39-223	ENST00000463004	MARCH6	O60337	910 aa		14.01	□□□□□ -0.17
RBM39-223	ENST00000463004	CEP85	Q6P2H3	762 aa		14.01	□□□□□ -0.17
RBM39-223	ENST00000463004	CCDC47	Q96A33	483 aa	Known RBP	14.01	□□□□□ -0.17
RBM39-223	ENST00000463004	SLC39A6	Q13433	755 aa		14.01	□□□□□ -0.17
RBM39-223	ENST00000463004	PARP10	Q53GL7	1025 aa		14.01	□□□□□ -0.17
RBM39-223	ENST00000463004	SH2B1	Q9NRF2	756 aa	Predicted RBP	14.01	□□□□□ -0.17
RBM39-223	ENST00000463004	PNPLA6	Q8IY17	1366 aa		14.01	□□□□□ -0.17
RBM39-223	ENST00000463004	POLR1A	O95602	1720 aa	Predicted RBP	14.01	□□□□□ -0.17
RBM39-223	ENST00000463004	VPS37C	A5D8V6	355 aa	Predicted RBP	14	□□□□□ -0.17
RBM39-223	ENST00000463004	EIF4A1	P60842	406 aa	Known RBP	14	□□□□□ -0.17
RBM39-223	ENST00000463004	HMG20B	Q9P0W2	317 aa		14	□□□□□ -0.17
RBM39-223	ENST00000463004	AOX1	Q06278	1338 aa		14	□□□□□ -0.17
RBM39-223	ENST00000463004	ADAMTS13	Q76LX8	1427 aa		14	□□□□□ -0.17
RBM39-223	ENST00000463004	ATP6V1A	P38606	617 aa		14	□□□□□ -0.17
RBM39-223	ENST00000463004	LDHAL6A	Q6ZMR3	332 aa		14	□□□□□ -0.17
RBM39-223	ENST00000463004	FBXW7	Q969H0	707 aa		14	□□□□□ -0.17
RBM39-223	ENST00000463004	RICTOR	Q6R327	1708 aa		14	□□□□□ -0.17
RBM39-223	ENST00000463004	METTL22	Q9BUU2	404 aa	Predicted RBP	14	□□□□□ -0.17
RBM39-223	ENST00000463004	PHKG2	P15735	406 aa		13.99	□□□□□ -0.17
RBM39-223	ENST00000463004	CWC27	Q6UX04	472 aa	Known RBP	13.99	□□□□□ -0.17
RBM39-223	ENST00000463004	CCDC191	Q8NCU4	936 aa		13.99	□□□□□ -0.17
RBM39-223	ENST00000463004	ZNF396	Q96N95	335 aa	Predicted RBP	13.99	□□□□□ -0.17
RBM39-223	ENST00000463004	C8orf37	Q96NL8	207 aa		13.99	□□□□□ -0.17
RBM39-223	ENST00000463004	LRP2BP	Q9P2M1	347 aa		13.99	□□□□□ -0.17
RBM39-223	ENST00000463004	ANAPC15	P60006	121 aa		13.99	□□□□□ -0.17
RBM39-223	ENST00000463004	GZF1	Q9H116	711 aa	Predicted RBP	13.99	□□□□□ -0.17
RBM39-223	ENST00000463004	PDRG1	Q9NUG6	133 aa		13.99	□□□□□ -0.17
RBM39-223	ENST00000463004	CCDC73	Q6ZRK6	1079 aa		13.98	□□□□□ -0.17
RBM39-223	ENST00000463004	RFC4	P35249	363 aa		13.98	□□□□□ -0.17
RBM39-223	ENST00000463004	GSE1	Q14687	1217 aa		13.98	□□□□□ -0.17
RBM39-223	ENST00000463004	TRIM22	Q8IYM9	498 aa		13.98	□□□□□ -0.17
RBM39-223	ENST00000463004	AIDA	Q96BJ3	306 aa		13.98	□□□□□ -0.17
RBM39-223	ENST00000463004	ABCC4	O15439	1325 aa		13.98	□□□□□ -0.17
RBM39-223	ENST00000463004	WDR17	Q8IZU2	1322 aa		13.98	□□□□□ -0.17
RBM39-223	ENST00000463004	DDX46	Q7L014	1031 aa	Known RBP	13.98	□□□□□ -0.17
RBM39-223	ENST00000463004	PTPRU	Q92729	1446 aa		13.98	□□□□□ -0.17
RBM39-223	ENST00000463004	ADGRB1	O14514	1584 aa		13.98	□□□□□ -0.17
RBM39-223	ENST00000463004	SPATA31A3	Q5VYP0	1347 aa		13.98	□□□□□ -0.17
RBM39-223	ENST00000463004	SMARCA5	O60264	1052 aa	Predicted RBP	13.98	□□□□□ -0.17
RBM39-223	ENST00000463004	RLBP1	P12271	317 aa		13.98	□□□□□ -0.17
RBM39-223	ENST00000463004	LDHC	P07864	332 aa		13.97	□□□□□ -0.17
RBM39-223	ENST00000463004	PDE1A	P54750	535 aa		13.97	□□□□□ -0.17
RBM39-223	ENST00000463004	SPTY2D1	Q68D10	685 aa	Predicted RBP	13.97	□□□□□ -0.17
RBM39-223	ENST00000463004	WASF1	Q92558	559 aa		13.97	□□□□□ -0.17
RBM39-223	ENST00000463004	RPGR	Q92834	1020 aa	Known RBP	13.97	□□□□□ -0.17
RBM39-223	ENST00000463004	UTP14A	Q9BVJ6	771 aa	Known RBP	13.97	□□□□□ -0.17
RBM39-223	ENST00000463004	RNF41	Q9H4P4	317 aa	Predicted RBP	13.97	□□□□□ -0.17
RBM39-223	ENST00000463004	CTDP1	Q9Y5B0	961 aa	Predicted RBP	13.97	□□□□□ -0.17
RBM39-223	ENST00000463004	TMEM131L	A2VDJ0	1609 aa		13.97	□□□□□ -0.17
RBM39-223	ENST00000463004	ERBB3	P21860	1342 aa		13.97	□□□□□ -0.17
RBM39-223	ENST00000463004	ATP5J2-PTCD1	G3V325	749 aa		13.97	□□□□□ -0.17
RBM39-223	ENST00000463004	ZNF853	P0CG23	659 aa		13.97	□□□□□ -0.17
RBM39-223	ENST00000463004	DZIP3	Q86Y13	1208 aa	Known RBP	13.97	□□□□□ -0.17
RBM39-223	ENST00000463004	JMY	Q8N9B5	988 aa		13.97	□□□□□ -0.17
RBM39-223	ENST00000463004	RAI14	Q9P0K7	980 aa		13.97	□□□□□ -0.17
RBM39-223	ENST00000463004	BOLA2	Q9H3K6	86 aa		13.97	□□□□□ -0.17
RBM39-223	ENST00000463004	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.96	□□□□□ -0.17
RBM39-223	ENST00000463004	ST5	P78524	1137 aa		13.96	□□□□□ -0.17
RBM39-223	ENST00000463004	JAKMIP1	Q96N16	626 aa	Known RBP	13.96	□□□□□ -0.17
RBM39-223	ENST00000463004	EPB41L2	O43491	1005 aa	Known RBP	13.96	□□□□□ -0.18
RBM39-223	ENST00000463004	IL17RE	Q8NFR9	667 aa		13.96	□□□□□ -0.18
RBM39-223	ENST00000463004	SETDB2	Q96T68	719 aa		13.96	□□□□□ -0.18
RBM39-223	ENST00000463004	SETD1B	Q9UPS6	1966 aa	Known RBP	13.96	□□□□□ -0.18
RBM39-223	ENST00000463004	RAD50	Q92878	1312 aa		13.96	□□□□□ -0.18
RBM39-223	ENST00000463004	GOLGA6L19	H0YKK7	550 aa		13.95	□□□□□ -0.18
RBM39-223	ENST00000463004	BICDL1	Q6ZP65	573 aa		13.95	□□□□□ -0.18
RBM39-223	ENST00000463004	BICD2	Q8TD16	824 aa		13.95	□□□□□ -0.18
RBM39-223	ENST00000463004	MROH1	Q8NDA8	1641 aa		13.95	□□□□□ -0.18
RBM39-223	ENST00000463004	PPL	O60437	1756 aa		13.95	□□□□□ -0.18
RBM39-223	ENST00000463004	IDH1	O75874	414 aa	Known RBP	13.95	□□□□□ -0.18
RBM39-223	ENST00000463004	TDO2	P48775	406 aa		13.95	□□□□□ -0.18
RBM39-223	ENST00000463004	TBC1D9	Q6ZT07	1266 aa		13.95	□□□□□ -0.18
RBM39-223	ENST00000463004	NLRP3	Q96P20	1036 aa		13.95	□□□□□ -0.18
RBM39-223	ENST00000463004	ANXA1	P04083	346 aa		13.95	□□□□□ -0.18
RBM39-223	ENST00000463004	GPT	P24298	496 aa		13.95	□□□□□ -0.18
RBM39-223	ENST00000463004	CCDC8	Q9H0W5	538 aa	Predicted RBP	13.95	□□□□□ -0.18
RBM39-223	ENST00000463004	LGR6	Q9HBX8	967 aa		13.95	□□□□□ -0.18
RBM39-223	ENST00000463004	USP32	Q8NFA0	1604 aa		13.95	□□□□□ -0.18
RBM39-223	ENST00000463004	LMBR1L	Q6UX01	489 aa		13.95	□□□□□ -0.18
RBM39-223	ENST00000463004	ZGPAT	Q8N5A5	531 aa	Known RBP	13.95	□□□□□ -0.18
RBM39-223	ENST00000463004	TBC1D32	Q96NH3	1257 aa		13.95	□□□□□ -0.18
RBM39-223	ENST00000463004	RTCB	Q9Y3I0	505 aa	Known RBP	13.95	□□□□□ -0.18
RBM39-223	ENST00000463004	GIGYF1	O75420	1035 aa	Predicted RBP	13.94	□□□□□ -0.18
RBM39-223	ENST00000463004	NFKBIB	Q15653	356 aa		13.94	□□□□□ -0.18
RBM39-223	ENST00000463004	THRAP3	Q9Y2W1	955 aa	Known RBP	13.94	□□□□□ -0.18
RBM39-223	ENST00000463004	CCDC69	A6NI79	296 aa		13.94	□□□□□ -0.18
RBM39-223	ENST00000463004	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.94	□□□□□ -0.18
RBM39-223	ENST00000463004	TPTE2	Q6XPS3	522 aa		13.94	□□□□□ -0.18
RBM39-223	ENST00000463004	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.94	□□□□□ -0.18
RBM39-223	ENST00000463004	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.94	□□□□□ -0.18
RBM39-223	ENST00000463004	TNS3	Q68CZ2	1445 aa		13.94	□□□□□ -0.18
RBM39-223	ENST00000463004	CCDC196	A0A1B0GTZ2	297 aa		13.94	□□□□□ -0.18
RBM39-223	ENST00000463004	ANKRD18A	Q8IVF6	992 aa		13.94	□□□□□ -0.18
RBM39-223	ENST00000463004	BECN2	A8MW95	431 aa		13.93	□□□□□ -0.18
RBM39-223	ENST00000463004	UBAC1	Q9BSL1	405 aa		13.93	□□□□□ -0.18
RBM39-223	ENST00000463004	TPM3	P06753	285 aa		13.93	□□□□□ -0.18
RBM39-223	ENST00000463004	ATP2B3	Q16720	1220 aa		13.93	□□□□□ -0.18

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