RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 L3MBTL3Q96JM7 780 aaPredicted RBP16.49■□□□□ 0.23
HDAC4-207ENST00000461113 ABT1Q9ULW3 272 aaKnown RBP16.48■□□□□ 0.23
HDAC4-207ENST00000461113 ADAMTS8Q9UP79 889 aa16.48■□□□□ 0.23
HDAC4-207ENST00000461113 ADAMTS7Q9UKP4 1686 aa16.48■□□□□ 0.23
HDAC4-207ENST00000461113 COL15A1P39059 1388 aa16.48■□□□□ 0.23
HDAC4-207ENST00000461113 CYP19A1P11511 503 aaPredicted RBP16.47■□□□□ 0.23
HDAC4-207ENST00000461113 CCDC24Q8N4L8 307 aa16.47■□□□□ 0.23
HDAC4-207ENST00000461113 RUNDC1Q96C34 613 aa16.47■□□□□ 0.23
HDAC4-207ENST00000461113 PHACTR3Q96KR7 559 aa16.47■□□□□ 0.23
HDAC4-207ENST00000461113 TJP1Q07157 1748 aa16.46■□□□□ 0.23
HDAC4-207ENST00000461113 PDE6BP35913 854 aa16.46■□□□□ 0.23
HDAC4-207ENST00000461113 MAP1SQ66K74 1059 aaPredicted RBP16.46■□□□□ 0.23
HDAC4-207ENST00000461113 BRIP1Q9BX63 1249 aa16.46■□□□□ 0.23
HDAC4-207ENST00000461113 ZBTB1Q9Y2K1 713 aa16.46■□□□□ 0.23
HDAC4-207ENST00000461113 NRXN2Q9P2S2 1712 aa16.45■□□□□ 0.22
HDAC4-207ENST00000461113 CCER2I3L3R5 266 aa16.45■□□□□ 0.22
HDAC4-207ENST00000461113 HTATSF1O43719 755 aaKnown RBP16.45■□□□□ 0.22
HDAC4-207ENST00000461113 LMOD3Q0VAK6 560 aa16.45■□□□□ 0.22
HDAC4-207ENST00000461113 TEFQ10587 303 aa16.45■□□□□ 0.22
HDAC4-207ENST00000461113 NFE2L2Q16236 605 aa16.45■□□□□ 0.22
HDAC4-207ENST00000461113 CNTROBQ8N137 903 aa16.45■□□□□ 0.22
HDAC4-207ENST00000461113 BEGAINQ9BUH8 593 aa16.45■□□□□ 0.22
HDAC4-207ENST00000461113 PDZRN3Q9UPQ7 1066 aa16.45■□□□□ 0.22
HDAC4-207ENST00000461113 DLEC1Q9Y238 1755 aa16.45■□□□□ 0.22
HDAC4-207ENST00000461113 CCDC88AQ3V6T2 1871 aa16.44■□□□□ 0.22
HDAC4-207ENST00000461113 RNMTO43148 476 aaKnown RBP16.44■□□□□ 0.22
HDAC4-207ENST00000461113 CCDC146Q8IYE0 955 aa16.44■□□□□ 0.22
HDAC4-207ENST00000461113 PLEKHF1Q96S99 279 aa16.44■□□□□ 0.22
HDAC4-207ENST00000461113 HACL1Q9UJ83 578 aa16.44■□□□□ 0.22
HDAC4-207ENST00000461113 AFDNP55196 1824 aaKnown RBP16.44■□□□□ 0.22
HDAC4-207ENST00000461113 VIRMAQ69YN4 1812 aaKnown RBP16.44■□□□□ 0.22
HDAC4-207ENST00000461113 EPHX2P34913 555 aa16.43■□□□□ 0.22
HDAC4-207ENST00000461113 GRM1Q13255 1194 aa16.43■□□□□ 0.22
HDAC4-207ENST00000461113 PAXIP1Q6ZW49 1069 aaPredicted RBP16.43■□□□□ 0.22
HDAC4-207ENST00000461113 PNISRQ8TF01 805 aaKnown RBP16.43■□□□□ 0.22
HDAC4-207ENST00000461113 TSKSQ9UJT2 592 aa16.43■□□□□ 0.22
HDAC4-207ENST00000461113 ZNF541Q9H0D2 1346 aa16.43■□□□□ 0.22
HDAC4-207ENST00000461113 CANXP27824 592 aaKnown RBP16.42■□□□□ 0.22
HDAC4-207ENST00000461113 CCDC184Q52MB2 194 aa16.42■□□□□ 0.22
HDAC4-207ENST00000461113 TBC1D9BQ66K14 1250 aa16.42■□□□□ 0.22
HDAC4-207ENST00000461113 PRR5LQ6MZQ0 368 aa16.42■□□□□ 0.22
HDAC4-207ENST00000461113 PRPF40BQ6NWY9 871 aaKnown RBP16.42■□□□□ 0.22
HDAC4-207ENST00000461113 CNKSR1Q969H4 720 aa16.42■□□□□ 0.22
HDAC4-207ENST00000461113 CAPNS2Q96L46 248 aa16.42■□□□□ 0.22
HDAC4-207ENST00000461113 MCOLN1Q9GZU1 580 aa16.42■□□□□ 0.22
HDAC4-207ENST00000461113 RIPK4P57078 832 aa16.41■□□□□ 0.22
HDAC4-207ENST00000461113 SLC39A6Q13433 755 aa16.41■□□□□ 0.22
HDAC4-207ENST00000461113 SOGA3Q5TF21 947 aa16.41■□□□□ 0.22
HDAC4-207ENST00000461113 PNMA8AQ86V59 439 aaPredicted RBP16.41■□□□□ 0.22
HDAC4-207ENST00000461113 FAM9BQ8IZU0 186 aa16.41■□□□□ 0.22
HDAC4-207ENST00000461113 GPR101Q96P66 508 aaPredicted RBP16.41■□□□□ 0.22
HDAC4-207ENST00000461113 TMPOP42166 694 aaKnown RBP16.4■□□□□ 0.22
HDAC4-207ENST00000461113 NEUROD2Q15784 382 aa16.4■□□□□ 0.22
HDAC4-207ENST00000461113 STYK1Q6J9G0 422 aa16.4■□□□□ 0.22
HDAC4-207ENST00000461113 CYP4F22Q6NT55 531 aa16.4■□□□□ 0.22
HDAC4-207ENST00000461113 SLC52A2Q9HAB3 445 aa16.4■□□□□ 0.22
HDAC4-207ENST00000461113 LGR6Q9HBX8 967 aa16.4■□□□□ 0.22
HDAC4-207ENST00000461113 DDX21Q9NR30 783 aaKnown RBP eCLIP16.4■□□□□ 0.22
HDAC4-207ENST00000461113 ECE1P42892 770 aa16.39■□□□□ 0.21
HDAC4-207ENST00000461113 RNF123Q5XPI4 1314 aa16.39■□□□□ 0.21
HDAC4-207ENST00000461113 FER1L6Q2WGJ9 1857 aa16.38■□□□□ 0.21
HDAC4-207ENST00000461113 FMR1Q06787 632 aaKnown RBP eCLIP16.38■□□□□ 0.21
HDAC4-207ENST00000461113 TTC5Q8N0Z6 440 aa16.38■□□□□ 0.21
HDAC4-207ENST00000461113 IL17REQ8NFR9 667 aa16.38■□□□□ 0.21
HDAC4-207ENST00000461113 ZNF277Q9NRM2 450 aaPredicted RBP16.38■□□□□ 0.21
HDAC4-207ENST00000461113 DICER1Q9UPY3 1922 aaKnown RBP16.37■□□□□ 0.21
HDAC4-207ENST00000461113 A0A087WZG4 1122 aa16.37■□□□□ 0.21
HDAC4-207ENST00000461113 SRGNP10124 158 aa16.37■□□□□ 0.21
HDAC4-207ENST00000461113 EIF5P55010 431 aaKnown RBP16.37■□□□□ 0.21
HDAC4-207ENST00000461113 MCM10Q7L590 875 aa16.37■□□□□ 0.21
HDAC4-207ENST00000461113 MIER1Q8N108 512 aa16.37■□□□□ 0.21
HDAC4-207ENST00000461113 APAF1O14727 1248 aa16.36■□□□□ 0.21
HDAC4-207ENST00000461113 NPHP1O15259 732 aa16.36■□□□□ 0.21
HDAC4-207ENST00000461113 CALD1Q05682 793 aaKnown RBP16.36■□□□□ 0.21
HDAC4-207ENST00000461113 CCDC93Q567U6 631 aa16.36■□□□□ 0.21
HDAC4-207ENST00000461113 C7orf43Q8WVR3 580 aa16.36■□□□□ 0.21
HDAC4-207ENST00000461113 MASTLQ96GX5 879 aa16.36■□□□□ 0.21
HDAC4-207ENST00000461113 RRP7AQ9Y3A4 280 aaKnown RBP16.36■□□□□ 0.21
HDAC4-207ENST00000461113 SCN4AP35499 1836 aa16.35■□□□□ 0.21
HDAC4-207ENST00000461113 BTBD11A6QL63 1104 aa16.35■□□□□ 0.21
HDAC4-207ENST00000461113 AOC2O75106 756 aa16.35■□□□□ 0.21
HDAC4-207ENST00000461113 FKBP4Q02790 459 aaKnown RBP eCLIP16.35■□□□□ 0.21
HDAC4-207ENST00000461113 DGKZQ13574 1117 aa16.35■□□□□ 0.21
HDAC4-207ENST00000461113 TAF7Q15545 349 aaPredicted RBP16.35■□□□□ 0.21
HDAC4-207ENST00000461113 CNBD1Q8NA66 436 aa16.35■□□□□ 0.21
HDAC4-207ENST00000461113 TBC1D2BQ9UPU7 963 aa16.35■□□□□ 0.21
HDAC4-207ENST00000461113 ADAMTSL1Q8N6G6 1762 aa16.34■□□□□ 0.21
HDAC4-207ENST00000461113 DCTN1Q14203 1278 aa16.34■□□□□ 0.21
HDAC4-207ENST00000461113 VSIG10Q8N0Z9 540 aa16.34■□□□□ 0.21
HDAC4-207ENST00000461113 ZNF330Q9Y3S2 320 aaPredicted RBP16.34■□□□□ 0.21
HDAC4-207ENST00000461113 COL11A2P13942 1736 aaPredicted RBP16.33■□□□□ 0.21
HDAC4-207ENST00000461113 ANKRD31Q8N7Z5 1873 aa16.33■□□□□ 0.21
HDAC4-207ENST00000461113 MAP2K2P36507 400 aa16.33■□□□□ 0.2
HDAC4-207ENST00000461113 ST5P78524 1137 aa16.33■□□□□ 0.2
HDAC4-207ENST00000461113 CST9Q5W186 159 aa16.33■□□□□ 0.2
HDAC4-207ENST00000461113 OLFM4Q6UX06 510 aa16.33■□□□□ 0.2
HDAC4-207ENST00000461113 SETDB2Q96T68 719 aa16.33■□□□□ 0.2
HDAC4-207ENST00000461113 CEMIPQ8WUJ3 1361 aa16.33■□□□□ 0.2
HDAC4-207ENST00000461113 TNRC18O15417 2968 aaPredicted RBP16.33■□□□□ 0.2
HDAC4-207ENST00000461113 FZD9O00144 591 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms