RNA–Protein interactions for RNA: ENST00000458038.5

CPNE1-220, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-220ENST00000458038 SOGA3Q5TF21 947 aa28.66■■■□□ 2.18
CPNE1-220ENST00000458038 MCM10Q7L590 875 aa28.66■■■□□ 2.18
CPNE1-220ENST00000458038 C21orf2O43822 256 aa28.65■■■□□ 2.18
CPNE1-220ENST00000458038 TIAM2Q8IVF5 1701 aa28.65■■■□□ 2.18
CPNE1-220ENST00000458038 LTBP3Q9NS15 1303 aa28.65■■■□□ 2.18
CPNE1-220ENST00000458038 KLRG1Q96E93 195 aa28.64■■■□□ 2.18
CPNE1-220ENST00000458038 NEFMP07197 916 aa28.63■■■□□ 2.17
CPNE1-220ENST00000458038 SRGNP10124 158 aa28.63■■■□□ 2.17
CPNE1-220ENST00000458038 TAF7Q15545 349 aaPredicted RBP28.63■■■□□ 2.17
CPNE1-220ENST00000458038 MASTLQ96GX5 879 aa28.63■■■□□ 2.17
CPNE1-220ENST00000458038 COL11A2P13942 1736 aaPredicted RBP28.63■■■□□ 2.17
CPNE1-220ENST00000458038 NBPF5PQ86XG9 351 aaPredicted RBP28.62■■■□□ 2.17
CPNE1-220ENST00000458038 CCDC24Q8N4L8 307 aa28.62■■■□□ 2.17
CPNE1-220ENST00000458038 ERFEQ4G0M1 354 aa28.61■■■□□ 2.17
CPNE1-220ENST00000458038 TAOK3Q9H2K8 898 aa28.6■■■□□ 2.17
CPNE1-220ENST00000458038 SLX4Q8IY92 1834 aa28.59■■■□□ 2.17
CPNE1-220ENST00000458038 PRAMEF22A3QJZ6 481 aa28.59■■■□□ 2.17
CPNE1-220ENST00000458038 PRPF40BQ6NWY9 871 aaKnown RBP28.59■■■□□ 2.17
CPNE1-220ENST00000458038 TPTE2Q6XPS3 522 aa28.59■■■□□ 2.17
CPNE1-220ENST00000458038 JMYQ8N9B5 988 aa28.59■■■□□ 2.17
CPNE1-220ENST00000458038 ZNF219Q9P2Y4 722 aaPredicted RBP28.59■■■□□ 2.17
CPNE1-220ENST00000458038 ARFGEF2Q9Y6D5 1785 aa28.59■■■□□ 2.17
CPNE1-220ENST00000458038 PIP4K2AP48426 406 aaPredicted RBP28.58■■■□□ 2.17
CPNE1-220ENST00000458038 DCTN1Q14203 1278 aa28.58■■■□□ 2.17
CPNE1-220ENST00000458038 PNISRQ8TF01 805 aaKnown RBP28.58■■■□□ 2.17
CPNE1-220ENST00000458038 KLRG2A4D1S0 409 aaPredicted RBP28.56■■■□□ 2.16
CPNE1-220ENST00000458038 NBPF26B4DH59 902 aa28.56■■■□□ 2.16
CPNE1-220ENST00000458038 NBPF10Q6P3W6 841 aaKnown RBP28.56■■■□□ 2.16
CPNE1-220ENST00000458038 NBPF15Q8N660 670 aa28.56■■■□□ 2.16
CPNE1-220ENST00000458038 PCNTO95613 3336 aa28.55■■■□□ 2.16
CPNE1-220ENST00000458038 NPR1P16066 1061 aa28.55■■■□□ 2.16
CPNE1-220ENST00000458038 HTRA3P83110 453 aa28.55■■■□□ 2.16
CPNE1-220ENST00000458038 PNNQ9H307 717 aaKnown RBP28.55■■■□□ 2.16
CPNE1-220ENST00000458038 NIP7Q9Y221 180 aaKnown RBP eCLIP28.55■■■□□ 2.16
CPNE1-220ENST00000458038 CACNA1SQ13698 1873 aa28.55■■■□□ 2.16
CPNE1-220ENST00000458038 POTECB2RU33 542 aa28.53■■■□□ 2.16
CPNE1-220ENST00000458038 DLG5Q8TDM6 1919 aa28.52■■■□□ 2.16
CPNE1-220ENST00000458038 CCDC93Q567U6 631 aa28.51■■■□□ 2.15
CPNE1-220ENST00000458038 C7orf43Q8WVR3 580 aa28.51■■■□□ 2.15
CPNE1-220ENST00000458038 LAMB4A4D0S4 1761 aa28.5■■■□□ 2.15
CPNE1-220ENST00000458038 ERVV-1B6SEH8 477 aa28.49■■■□□ 2.15
CPNE1-220ENST00000458038 ALDH1B1P30837 517 aa28.49■■■□□ 2.15
CPNE1-220ENST00000458038 MIS18AQ9NYP9 233 aa28.49■■■□□ 2.15
CPNE1-220ENST00000458038 RTKN2Q8IZC4 609 aa28.48■■■□□ 2.15
CPNE1-220ENST00000458038 NYXQ9GZU5 481 aa28.48■■■□□ 2.15
CPNE1-220ENST00000458038 GTF2E1P29083 439 aaPredicted RBP28.47■■■□□ 2.15
CPNE1-220ENST00000458038 NFE2L2Q16236 605 aa28.47■■■□□ 2.15
CPNE1-220ENST00000458038 PLEKHF1Q96S99 279 aa28.47■■■□□ 2.15
CPNE1-220ENST00000458038 KDM3BQ7LBC6 1761 aa28.46■■■□□ 2.15
CPNE1-220ENST00000458038 IQCA1LA6NCM1 817 aa28.45■■■□□ 2.14
CPNE1-220ENST00000458038 DDNO94850 711 aaPredicted RBP28.45■■■□□ 2.14
CPNE1-220ENST00000458038 EIF4A1P60842 406 aaKnown RBP28.45■■■□□ 2.14
CPNE1-220ENST00000458038 FKBP4Q02790 459 aaKnown RBP eCLIP28.45■■■□□ 2.14
CPNE1-220ENST00000458038 HLFQ16534 295 aa28.45■■■□□ 2.14
CPNE1-220ENST00000458038 NUP98P52948 1817 aa28.44■■■□□ 2.14
CPNE1-220ENST00000458038 CHADLQ6NUI6 762 aa28.44■■■□□ 2.14
CPNE1-220ENST00000458038 MAPK8IP3Q9UPT6 1336 aa28.43■■■□□ 2.14
CPNE1-220ENST00000458038 KIF6Q6ZMV9 814 aa28.43■■■□□ 2.14
CPNE1-220ENST00000458038 L3MBTL3Q96JM7 780 aaPredicted RBP28.43■■■□□ 2.14
CPNE1-220ENST00000458038 SCN4AP35499 1836 aa28.43■■■□□ 2.14
CPNE1-220ENST00000458038 MAP3K15Q6ZN16 1313 aa28.43■■■□□ 2.14
CPNE1-220ENST00000458038 FAM177BA6PVY3 158 aa28.42■■■□□ 2.14
CPNE1-220ENST00000458038 RRP7AQ9Y3A4 280 aaKnown RBP28.41■■■□□ 2.14
CPNE1-220ENST00000458038 ERBB4Q15303 1308 aa28.41■■■□□ 2.14
CPNE1-220ENST00000458038 CRY2Q49AN0 593 aa28.39■■■□□ 2.14
CPNE1-220ENST00000458038 CC2D2BQ6DHV5 1058 aa28.39■■■□□ 2.14
CPNE1-220ENST00000458038 NGEFQ8N5V2 710 aa28.39■■■□□ 2.14
CPNE1-220ENST00000458038 IBTKQ9P2D0 1353 aaPredicted RBP28.38■■■□□ 2.13
CPNE1-220ENST00000458038 GRIPAP1Q4V328 841 aa28.38■■■□□ 2.13
CPNE1-220ENST00000458038 LDHDQ86WU2 507 aa28.37■■■□□ 2.13
CPNE1-220ENST00000458038 ZNF277Q9NRM2 450 aaPredicted RBP28.37■■■□□ 2.13
CPNE1-220ENST00000458038 CREBZFQ9NS37 354 aa28.37■■■□□ 2.13
CPNE1-220ENST00000458038 RIC1Q4ADV7 1423 aa28.36■■■□□ 2.13
CPNE1-220ENST00000458038 PSMD1Q99460 953 aa28.36■■■□□ 2.13
CPNE1-220ENST00000458038 BABAM1Q9NWV8 329 aa28.36■■■□□ 2.13
CPNE1-220ENST00000458038 MYL6BP14649 208 aa28.35■■■□□ 2.13
CPNE1-220ENST00000458038 TTLL7Q6ZT98 887 aa28.35■■■□□ 2.13
CPNE1-220ENST00000458038 THUMPD2Q9BTF0 503 aaKnown RBP28.35■■■□□ 2.13
CPNE1-220ENST00000458038 TAF1DQ9H5J8 278 aaPredicted RBP28.35■■■□□ 2.13
CPNE1-220ENST00000458038 HOXA10P31260 410 aaPredicted RBP28.34■■■□□ 2.13
CPNE1-220ENST00000458038 IARSP41252 1262 aaKnown RBP28.34■■■□□ 2.13
CPNE1-220ENST00000458038 RALBP1Q15311 655 aa28.34■■■□□ 2.13
CPNE1-220ENST00000458038 SYNE4Q8N205 404 aa28.34■■■□□ 2.13
CPNE1-220ENST00000458038 GIGYF2Q6Y7W6 1299 aaKnown RBP28.33■■■□□ 2.13
CPNE1-220ENST00000458038 NUTM1Q86Y26 1132 aa28.33■■■□□ 2.13
CPNE1-220ENST00000458038 RPGRQ92834 1020 aaKnown RBP28.33■■■□□ 2.13
CPNE1-220ENST00000458038 TSPYL4Q9UJ04 414 aa28.33■■■□□ 2.13
CPNE1-220ENST00000458038 FZD9O00144 591 aa28.32■■■□□ 2.12
CPNE1-220ENST00000458038 COL13A1Q5TAT6 717 aaPredicted RBP28.32■■■□□ 2.12
CPNE1-220ENST00000458038 OLFM4Q6UX06 510 aa28.32■■■□□ 2.12
CPNE1-220ENST00000458038 ZNF34Q8IZ26 560 aa28.32■■■□□ 2.12
CPNE1-220ENST00000458038 JDP2Q8WYK2 163 aa28.32■■■□□ 2.12
CPNE1-220ENST00000458038 HACL1Q9UJ83 578 aa28.32■■■□□ 2.12
CPNE1-220ENST00000458038 POTEIP0CG38 1075 aa28.31■■■□□ 2.12
CPNE1-220ENST00000458038 POTEJP0CG39 1038 aa28.31■■■□□ 2.12
CPNE1-220ENST00000458038 LMOD3Q0VAK6 560 aa28.31■■■□□ 2.12
CPNE1-220ENST00000458038 PPP1R42Q7Z4L9 355 aa28.31■■■□□ 2.12
CPNE1-220ENST00000458038 ZBTB3Q9H5J0 574 aa28.31■■■□□ 2.12
CPNE1-220ENST00000458038 ABCC12Q96J65 1359 aa28.31■■■□□ 2.12
CPNE1-220ENST00000458038 GPTP24298 496 aa28.3■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms