RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 NECTIN2Q92692 538 aa16.62■□□□□ 0.25
PRPF40A-203ENST00000448428 MBIPQ9NS73 344 aa16.62■□□□□ 0.25
PRPF40A-203ENST00000448428 ANKRD31Q8N7Z5 1873 aa16.62■□□□□ 0.25
PRPF40A-203ENST00000448428 ERBB4Q15303 1308 aa16.62■□□□□ 0.25
PRPF40A-203ENST00000448428 UTRNP46939 3433 aa16.61■□□□□ 0.25
PRPF40A-203ENST00000448428 ERVV-1B6SEH8 477 aa16.61■□□□□ 0.25
PRPF40A-203ENST00000448428 LRP10Q7Z4F1 713 aa16.61■□□□□ 0.25
PRPF40A-203ENST00000448428 GOLGB1Q14789 3259 aaKnown RBP16.61■□□□□ 0.25
PRPF40A-203ENST00000448428 ARFGEF1Q9Y6D6 1849 aa16.61■□□□□ 0.25
PRPF40A-203ENST00000448428 ANXA1P04083 346 aa16.6■□□□□ 0.25
PRPF40A-203ENST00000448428 GNAI1P63096 354 aa16.6■□□□□ 0.25
PRPF40A-203ENST00000448428 CALD1Q05682 793 aaKnown RBP16.6■□□□□ 0.25
PRPF40A-203ENST00000448428 PROSER3Q2NL68 480 aa16.6■□□□□ 0.25
PRPF40A-203ENST00000448428 DALRD3Q5D0E6 543 aaKnown RBP16.6■□□□□ 0.25
PRPF40A-203ENST00000448428 IFT57Q9NWB7 429 aa16.6■□□□□ 0.25
PRPF40A-203ENST00000448428 NIP7Q9Y221 180 aaKnown RBP eCLIP16.6■□□□□ 0.25
PRPF40A-203ENST00000448428 MAP3K15Q6ZN16 1313 aa16.6■□□□□ 0.25
PRPF40A-203ENST00000448428 KIF6Q6ZMV9 814 aa16.59■□□□□ 0.25
PRPF40A-203ENST00000448428 C2CD5Q86YS7 1000 aa16.59■□□□□ 0.25
PRPF40A-203ENST00000448428 CNBD1Q8NA66 436 aa16.59■□□□□ 0.25
PRPF40A-203ENST00000448428 ZNF784Q8NCA9 323 aaPredicted RBP16.59■□□□□ 0.25
PRPF40A-203ENST00000448428 BRIP1Q9BX63 1249 aa16.59■□□□□ 0.25
PRPF40A-203ENST00000448428 DLEC1Q9Y238 1755 aa16.59■□□□□ 0.25
PRPF40A-203ENST00000448428 H0YIN7 160 aa16.58■□□□□ 0.24
PRPF40A-203ENST00000448428 CCDC27Q2M243 656 aa16.58■□□□□ 0.24
PRPF40A-203ENST00000448428 DUSP27Q5VZP5 1158 aa16.58■□□□□ 0.24
PRPF40A-203ENST00000448428 ARHGAP27Q6ZUM4 889 aa16.58■□□□□ 0.24
PRPF40A-203ENST00000448428 NBPF5PQ86XG9 351 aaPredicted RBP16.58■□□□□ 0.24
PRPF40A-203ENST00000448428 ZBTB3Q9H5J0 574 aa16.58■□□□□ 0.24
PRPF40A-203ENST00000448428 NPHP1O15259 732 aa16.57■□□□□ 0.24
PRPF40A-203ENST00000448428 PDE6BP35913 854 aa16.57■□□□□ 0.24
PRPF40A-203ENST00000448428 TPTE2Q6XPS3 522 aa16.57■□□□□ 0.24
PRPF40A-203ENST00000448428 WWC1Q8IX03 1113 aa16.57■□□□□ 0.24
PRPF40A-203ENST00000448428 DDX21Q9NR30 783 aaKnown RBP eCLIP16.57■□□□□ 0.24
PRPF40A-203ENST00000448428 FAM177BA6PVY3 158 aa16.56■□□□□ 0.24
PRPF40A-203ENST00000448428 HOXB7P09629 217 aa16.56■□□□□ 0.24
PRPF40A-203ENST00000448428 ST5P78524 1137 aa16.56■□□□□ 0.24
PRPF40A-203ENST00000448428 COPS6Q7L5N1 327 aa16.56■□□□□ 0.24
PRPF40A-203ENST00000448428 FAM9BQ8IZU0 186 aa16.56■□□□□ 0.24
PRPF40A-203ENST00000448428 AIMP1Q12904 312 aaKnown RBP16.55■□□□□ 0.24
PRPF40A-203ENST00000448428 NCBP3Q53F19 620 aaKnown RBP16.55■□□□□ 0.24
PRPF40A-203ENST00000448428 HDGFL1Q5TGJ6 251 aa16.55■□□□□ 0.24
PRPF40A-203ENST00000448428 GIGYF2Q6Y7W6 1299 aaKnown RBP16.55■□□□□ 0.24
PRPF40A-203ENST00000448428 TTLL6Q8N841 843 aa16.55■□□□□ 0.24
PRPF40A-203ENST00000448428 XAGE3Q8WTP9 111 aa16.55■□□□□ 0.24
PRPF40A-203ENST00000448428 CHPF2Q9P2E5 772 aa16.55■□□□□ 0.24
PRPF40A-203ENST00000448428 PDZRN3Q9UPQ7 1066 aa16.55■□□□□ 0.24
PRPF40A-203ENST00000448428 COL11A2P13942 1736 aaPredicted RBP16.54■□□□□ 0.24
PRPF40A-203ENST00000448428 ELL2O00472 640 aaPredicted RBP16.54■□□□□ 0.24
PRPF40A-203ENST00000448428 GPTP24298 496 aa16.54■□□□□ 0.24
PRPF40A-203ENST00000448428 ZNF34Q8IZ26 560 aa16.54■□□□□ 0.24
PRPF40A-203ENST00000448428 C8orf58Q8NAV2 365 aa16.54■□□□□ 0.24
PRPF40A-203ENST00000448428 ZNF622Q969S3 477 aaKnown RBP eCLIP16.54■□□□□ 0.244e-9■■□□□ 12
PRPF40A-203ENST00000448428 SALL2Q9Y467 1007 aaPredicted RBP16.54■□□□□ 0.24
PRPF40A-203ENST00000448428 ATP10DQ9P241 1426 aa16.53■□□□□ 0.24
PRPF40A-203ENST00000448428 DBF4Q9UBU7 674 aaPredicted RBP16.53■□□□□ 0.24
PRPF40A-203ENST00000448428 UBN2Q6ZU65 1347 aa16.52■□□□□ 0.24
PRPF40A-203ENST00000448428 SRGNP10124 158 aa16.52■□□□□ 0.24
PRPF40A-203ENST00000448428 GTF2E1P29083 439 aaPredicted RBP16.52■□□□□ 0.24
PRPF40A-203ENST00000448428 SUSD4Q5VX71 490 aa16.52■□□□□ 0.24
PRPF40A-203ENST00000448428 TSR2Q969E8 191 aaKnown RBP16.52■□□□□ 0.24
PRPF40A-203ENST00000448428 SBF1O95248 1867 aa16.52■□□□□ 0.23
PRPF40A-203ENST00000448428 CACNA1SQ13698 1873 aa16.51■□□□□ 0.23
PRPF40A-203ENST00000448428 KLRG2A4D1S0 409 aaPredicted RBP16.51■□□□□ 0.23
PRPF40A-203ENST00000448428 NUTM1Q86Y26 1132 aa16.51■□□□□ 0.23
PRPF40A-203ENST00000448428 NYXQ9GZU5 481 aa16.51■□□□□ 0.23
PRPF40A-203ENST00000448428 IL16Q14005 1332 aa16.5■□□□□ 0.23
PRPF40A-203ENST00000448428 SLX4Q8IY92 1834 aa16.5■□□□□ 0.23
PRPF40A-203ENST00000448428 ERFEQ4G0M1 354 aa16.5■□□□□ 0.23
PRPF40A-203ENST00000448428 STYK1Q6J9G0 422 aa16.5■□□□□ 0.23
PRPF40A-203ENST00000448428 TSPYL6Q8N831 410 aa16.5■□□□□ 0.23
PRPF40A-203ENST00000448428 MASTLQ96GX5 879 aa16.5■□□□□ 0.23
PRPF40A-203ENST00000448428 HYPKQ9NX55 129 aa16.5■□□□□ 0.23
PRPF40A-203ENST00000448428 ANKRD36CQ5JPF3 1778 aa16.5■□□□□ 0.23
PRPF40A-203ENST00000448428 ADCY9O60503 1353 aa16.5■□□□□ 0.23
PRPF40A-203ENST00000448428 CCDC88AQ3V6T2 1871 aa16.49■□□□□ 0.23
PRPF40A-203ENST00000448428 ANKRD13DQ6ZTN6 518 aa16.49■□□□□ 0.23
PRPF40A-203ENST00000448428 WDR63Q8IWG1 891 aa16.49■□□□□ 0.23
PRPF40A-203ENST00000448428 CNKSR1Q969H4 720 aa16.49■□□□□ 0.23
PRPF40A-203ENST00000448428 C21orf2O43822 256 aa16.48■□□□□ 0.23
PRPF40A-203ENST00000448428 NTSR2O95665 410 aa16.48■□□□□ 0.23
PRPF40A-203ENST00000448428 NPR1P16066 1061 aa16.48■□□□□ 0.23
PRPF40A-203ENST00000448428 TCIRG1Q13488 830 aa16.48■□□□□ 0.23
PRPF40A-203ENST00000448428 PARP10Q53GL7 1025 aa16.48■□□□□ 0.23
PRPF40A-203ENST00000448428 PPP1R42Q7Z4L9 355 aa16.48■□□□□ 0.23
PRPF40A-203ENST00000448428 PLBD2Q8NHP8 589 aa16.48■□□□□ 0.23
PRPF40A-203ENST00000448428 ZNF219Q9P2Y4 722 aaPredicted RBP16.48■□□□□ 0.23
PRPF40A-203ENST00000448428 TNRC6CQ9HCJ0 1690 aaKnown RBP16.47■□□□□ 0.23
PRPF40A-203ENST00000448428 ARFGEF2Q9Y6D5 1785 aa16.47■□□□□ 0.23
PRPF40A-203ENST00000448428 HSP90AB3PQ58FF7 597 aa16.47■□□□□ 0.23
PRPF40A-203ENST00000448428 C9orf131Q5VYM1 1079 aa16.47■□□□□ 0.23
PRPF40A-203ENST00000448428 PHAXQ9H814 394 aaKnown RBP16.47■□□□□ 0.23
PRPF40A-203ENST00000448428 ABCC12Q96J65 1359 aa16.47■□□□□ 0.23
PRPF40A-203ENST00000448428 IBTKQ9P2D0 1353 aaPredicted RBP16.47■□□□□ 0.23
PRPF40A-203ENST00000448428 CCDC30Q5VVM6 783 aa16.46■□□□□ 0.23
PRPF40A-203ENST00000448428 PRPF40BQ6NWY9 871 aaKnown RBP16.46■□□□□ 0.23
PRPF40A-203ENST00000448428 NLRP10Q86W26 655 aa16.46■□□□□ 0.23
PRPF40A-203ENST00000448428 UTP14AQ9BVJ6 771 aaKnown RBP16.46■□□□□ 0.23
PRPF40A-203ENST00000448428 FER1L6Q2WGJ9 1857 aa16.46■□□□□ 0.22
PRPF40A-203ENST00000448428 PRELPP51888 382 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms