RNA–Protein interactions for RNA: ENST00000438362.6

CSDE1-205, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-205ENST00000438362 KDM4AO75164 1064 aa7.86□□□□□ -1.15
CSDE1-205ENST00000438362 HMGB1P09429 215 aaKnown RBP7.86□□□□□ -1.15
CSDE1-205ENST00000438362 PROSER2Q86WR7 435 aaPredicted RBP7.86□□□□□ -1.15
CSDE1-205ENST00000438362 PPP1R9BQ96SB3 815 aa7.86□□□□□ -1.15
CSDE1-205ENST00000438362 POGZQ7Z3K3 1410 aa7.86□□□□□ -1.15
CSDE1-205ENST00000438362 RTL1A6NKG5 1358 aa7.86□□□□□ -1.15
CSDE1-205ENST00000438362 ALDH1L1O75891 902 aa7.85□□□□□ -1.15
CSDE1-205ENST00000438362 SYT1P21579 422 aa7.85□□□□□ -1.15
CSDE1-205ENST00000438362 PTPN14Q15678 1187 aa7.85□□□□□ -1.15
CSDE1-205ENST00000438362 ANKLE2Q86XL3 938 aa7.85□□□□□ -1.15
CSDE1-205ENST00000438362 FAM200AQ8TCP9 573 aa7.85□□□□□ -1.15
CSDE1-205ENST00000438362 CAVIN2O95810 425 aa7.85□□□□□ -1.15
CSDE1-205ENST00000438362 TNNT1P13805 278 aa7.85□□□□□ -1.15
CSDE1-205ENST00000438362 ATP2B1P20020 1258 aa7.85□□□□□ -1.15
CSDE1-205ENST00000438362 ZC3H6P61129 1189 aaKnown RBP7.85□□□□□ -1.15
CSDE1-205ENST00000438362 CCDC57Q2TAC2 916 aa7.85□□□□□ -1.15
CSDE1-205ENST00000438362 C16orf45Q96MC5 204 aaPredicted RBP7.85□□□□□ -1.15
CSDE1-205ENST00000438362 TCEANC2Q96MN5 208 aa7.85□□□□□ -1.15
CSDE1-205ENST00000438362 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.85□□□□□ -1.159e-6■□□□□ 8.3
CSDE1-205ENST00000438362 ZMYND15Q9H091 742 aa7.85□□□□□ -1.15
CSDE1-205ENST00000438362 TMEM63CQ9P1W3 806 aa7.85□□□□□ -1.15
CSDE1-205ENST00000438362 LAMC1P11047 1609 aa7.85□□□□□ -1.15
CSDE1-205ENST00000438362 TULP1O00294 542 aaPredicted RBP7.85□□□□□ -1.15
CSDE1-205ENST00000438362 CEBPAP49715 358 aaPredicted RBP7.85□□□□□ -1.15
CSDE1-205ENST00000438362 CBX1P83916 185 aa7.85□□□□□ -1.15
CSDE1-205ENST00000438362 SART3Q15020 963 aaKnown RBP7.85□□□□□ -1.15
CSDE1-205ENST00000438362 NEK1Q96PY6 1258 aa7.85□□□□□ -1.15
CSDE1-205ENST00000438362 TET3O43151 1660 aa7.85□□□□□ -1.15
CSDE1-205ENST00000438362 PNMA6EA0A0J9YXQ4 647 aa7.85□□□□□ -1.15
CSDE1-205ENST00000438362 IPO7O95373 1038 aaKnown RBP7.85□□□□□ -1.15
CSDE1-205ENST00000438362 BRD1O95696 1058 aa7.85□□□□□ -1.15
CSDE1-205ENST00000438362 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.85□□□□□ -1.152e-8■■□□□ 11.7
CSDE1-205ENST00000438362 CLTCL1P53675 1640 aa7.84□□□□□ -1.15
CSDE1-205ENST00000438362 KIF1BO60333 1816 aa7.84□□□□□ -1.15
CSDE1-205ENST00000438362 SHROOM2Q13796 1616 aa7.84□□□□□ -1.15
CSDE1-205ENST00000438362 MADDQ8WXG6 1647 aa7.84□□□□□ -1.15
CSDE1-205ENST00000438362 SMTNL1A8MU46 457 aa7.84□□□□□ -1.15
CSDE1-205ENST00000438362 KIF2AO00139 706 aaPredicted RBP7.84□□□□□ -1.15
CSDE1-205ENST00000438362 PKP1Q13835 747 aa7.84□□□□□ -1.15
CSDE1-205ENST00000438362 MAP3K4Q9Y6R4 1608 aa7.84□□□□□ -1.15
CSDE1-205ENST00000438362 A0A0U1RQG5 324 aaPredicted RBP7.84□□□□□ -1.15
CSDE1-205ENST00000438362 NEMFO60524 1076 aa7.84□□□□□ -1.15
CSDE1-205ENST00000438362 XBP1P17861 261 aa7.84□□□□□ -1.15
CSDE1-205ENST00000438362 VPS53Q5VIR6 699 aa7.84□□□□□ -1.15
CSDE1-205ENST00000438362 SIRT2Q8IXJ6 389 aa7.84□□□□□ -1.15
CSDE1-205ENST00000438362 PHAXQ9H814 394 aaKnown RBP7.84□□□□□ -1.15
CSDE1-205ENST00000438362 DACT1Q9NYF0 836 aa7.84□□□□□ -1.15
CSDE1-205ENST00000438362 ZFYVE16Q7Z3T8 1539 aa7.84□□□□□ -1.15
CSDE1-205ENST00000438362 AOX1Q06278 1338 aa7.84□□□□□ -1.15
CSDE1-205ENST00000438362 CCDC66A2RUB6 948 aa7.84□□□□□ -1.15
CSDE1-205ENST00000438362 CBFA2T2O43439 604 aa7.84□□□□□ -1.15
CSDE1-205ENST00000438362 SFPQP23246 707 aaKnown RBP eCLIP7.84□□□□□ -1.15
CSDE1-205ENST00000438362 GUCY1B3Q02153 619 aa7.84□□□□□ -1.15
CSDE1-205ENST00000438362 IMMTQ16891 758 aaKnown RBP7.84□□□□□ -1.15
CSDE1-205ENST00000438362 KSR2Q6VAB6 950 aa7.84□□□□□ -1.15
CSDE1-205ENST00000438362 PRDM10Q9NQV6 1147 aa7.84□□□□□ -1.15
CSDE1-205ENST00000438362 MAP3K5Q99683 1374 aa7.84□□□□□ -1.16
CSDE1-205ENST00000438362 A0A087WZG4 1122 aa7.83□□□□□ -1.16
CSDE1-205ENST00000438362 GRM8O00222 908 aa7.83□□□□□ -1.16
CSDE1-205ENST00000438362 SGSM2O43147 1006 aa7.83□□□□□ -1.16
CSDE1-205ENST00000438362 CDKL5O76039 1030 aa7.83□□□□□ -1.16
CSDE1-205ENST00000438362 KIF18AQ8NI77 898 aa7.83□□□□□ -1.16
CSDE1-205ENST00000438362 ZSCAN16Q9H4T2 348 aaPredicted RBP7.83□□□□□ -1.16
CSDE1-205ENST00000438362 PA2G4Q9UQ80 394 aaKnown RBP7.83□□□□□ -1.16
CSDE1-205ENST00000438362 IFIT1P09914 478 aaKnown RBP7.83□□□□□ -1.16
CSDE1-205ENST00000438362 ZNF853P0CG23 659 aa7.83□□□□□ -1.16
CSDE1-205ENST00000438362 TERF1P54274 439 aa7.83□□□□□ -1.16
CSDE1-205ENST00000438362 KIF6Q6ZMV9 814 aa7.83□□□□□ -1.16
CSDE1-205ENST00000438362 FSIP1Q8NA03 581 aa7.83□□□□□ -1.16
CSDE1-205ENST00000438362 SYTL4Q96C24 671 aaPredicted RBP7.83□□□□□ -1.16
CSDE1-205ENST00000438362 C8orf76Q96K31 380 aa7.83□□□□□ -1.16
CSDE1-205ENST00000438362 CNNM1Q9NRU3 951 aa7.83□□□□□ -1.16
CSDE1-205ENST00000438362 NPHP3Q7Z494 1330 aa7.83□□□□□ -1.16
CSDE1-205ENST00000438362 CPA1P15085 419 aa7.83□□□□□ -1.16
CSDE1-205ENST00000438362 CCT2P78371 535 aaKnown RBP7.83□□□□□ -1.16
CSDE1-205ENST00000438362 STX1AQ16623 288 aa7.83□□□□□ -1.16
CSDE1-205ENST00000438362 ANO6Q4KMQ2 910 aa7.83□□□□□ -1.16
CSDE1-205ENST00000438362 ZSCAN25Q6NSZ9 544 aa7.83□□□□□ -1.16
CSDE1-205ENST00000438362 CCDC186Q7Z3E2 898 aa7.83□□□□□ -1.16
CSDE1-205ENST00000438362 LINS1Q8NG48 757 aa7.83□□□□□ -1.16
CSDE1-205ENST00000438362 RAD50Q92878 1312 aa7.83□□□□□ -1.16
CSDE1-205ENST00000438362 EPB41L2O43491 1005 aaKnown RBP7.82□□□□□ -1.16
CSDE1-205ENST00000438362 RRP12Q5JTH9 1297 aaKnown RBP7.82□□□□□ -1.16
CSDE1-205ENST00000438362 PPP4R3BQ5MIZ7 849 aa7.82□□□□□ -1.16
CSDE1-205ENST00000438362 CREB3L3Q68CJ9 461 aa7.82□□□□□ -1.16
CSDE1-205ENST00000438362 TRIM22Q8IYM9 498 aa7.82□□□□□ -1.16
CSDE1-205ENST00000438362 BRF1Q92994 677 aa7.82□□□□□ -1.16
CSDE1-205ENST00000438362 BABAM1Q9NWV8 329 aa7.82□□□□□ -1.16
CSDE1-205ENST00000438362 SNX14Q9Y5W7 946 aa7.82□□□□□ -1.16
CSDE1-205ENST00000438362 CDC42BPBQ9Y5S2 1711 aa7.82□□□□□ -1.16
CSDE1-205ENST00000438362 HSPA4P34932 840 aa7.82□□□□□ -1.16
CSDE1-205ENST00000438362 TYRO3Q06418 890 aa7.82□□□□□ -1.16
CSDE1-205ENST00000438362 NMIQ13287 307 aaPredicted RBP7.82□□□□□ -1.16
CSDE1-205ENST00000438362 CCDC70Q6NSX1 233 aa7.82□□□□□ -1.16
CSDE1-205ENST00000438362 UBE3BQ7Z3V4 1068 aa7.82□□□□□ -1.16
CSDE1-205ENST00000438362 VPS37DQ86XT2 251 aa7.82□□□□□ -1.16
CSDE1-205ENST00000438362 CCDC47Q96A33 483 aaKnown RBP7.82□□□□□ -1.16
CSDE1-205ENST00000438362 BRMS1Q9HCU9 246 aa7.82□□□□□ -1.16
CSDE1-205ENST00000438362 FILIP1LQ4L180 1135 aa7.82□□□□□ -1.16
CSDE1-205ENST00000438362 AKAP4Q5JQC9 854 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms