RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 PHACTR1Q9C0D0 580 aa4.28□□□□□ -1.72
VPS13A-208ENST00000423463 DCDC2BA2VCK2 349 aa4.27□□□□□ -1.73
VPS13A-208ENST00000423463 VSIG8P0DPA2 414 aa4.27□□□□□ -1.73
VPS13A-208ENST00000423463 TATP17735 454 aaPredicted RBP4.27□□□□□ -1.73
VPS13A-208ENST00000423463 WEE1P30291 646 aa4.27□□□□□ -1.73
VPS13A-208ENST00000423463 KRT76Q01546 638 aa4.27□□□□□ -1.73
VPS13A-208ENST00000423463 COL25A1Q9BXS0 654 aaPredicted RBP4.27□□□□□ -1.73
VPS13A-208ENST00000423463 TMEM88BA6NKF7 163 aa4.27□□□□□ -1.73
VPS13A-208ENST00000423463 SWI5Q1ZZU3 235 aa4.27□□□□□ -1.73
VPS13A-208ENST00000423463 SV2AQ7L0J3 742 aa4.27□□□□□ -1.73
VPS13A-208ENST00000423463 ALDH16A1Q8IZ83 802 aa4.27□□□□□ -1.73
VPS13A-208ENST00000423463 RETREG2Q8NC44 543 aa4.27□□□□□ -1.73
VPS13A-208ENST00000423463 CHMP3Q9Y3E7 222 aa4.27□□□□□ -1.73
VPS13A-208ENST00000423463 THOC2Q8NI27 1593 aaKnown RBP4.26□□□□□ -1.73
VPS13A-208ENST00000423463 KIF21AQ7Z4S6 1674 aa4.26□□□□□ -1.73
VPS13A-208ENST00000423463 A0A1W2PNR3 127 aa4.26□□□□□ -1.73
VPS13A-208ENST00000423463 PPP1R15AO75807 674 aaPredicted RBP4.26□□□□□ -1.73
VPS13A-208ENST00000423463 UBAP2LQ14157 1087 aaKnown RBP4.26□□□□□ -1.73
VPS13A-208ENST00000423463 GAS6Q14393 721 aa4.26□□□□□ -1.73
VPS13A-208ENST00000423463 LRRC69Q6ZNQ3 347 aa4.26□□□□□ -1.73
VPS13A-208ENST00000423463 NANOS1Q8WY41 292 aaKnown RBP4.26□□□□□ -1.73
VPS13A-208ENST00000423463 ABHD17AQ96GS6 310 aa4.26□□□□□ -1.73
VPS13A-208ENST00000423463 HCN2Q9UL51 889 aa4.26□□□□□ -1.73
VPS13A-208ENST00000423463 H7C1W4 665 aa4.26□□□□□ -1.73
VPS13A-208ENST00000423463 IGFBP4P22692 258 aa4.26□□□□□ -1.73
VPS13A-208ENST00000423463 EFHC2Q5JST6 749 aa4.26□□□□□ -1.73
VPS13A-208ENST00000423463 ZNF280CQ8ND82 737 aa4.26□□□□□ -1.73
VPS13A-208ENST00000423463 RHPN1Q8TCX5 695 aa4.26□□□□□ -1.73
VPS13A-208ENST00000423463 CNTNAP3BQ96NU0 1288 aa4.26□□□□□ -1.73
VPS13A-208ENST00000423463 CNTNAP3Q9BZ76 1288 aa4.26□□□□□ -1.73
VPS13A-208ENST00000423463 CRISPLD1Q9H336 500 aa4.26□□□□□ -1.73
VPS13A-208ENST00000423463 WDR62O43379 1518 aa4.26□□□□□ -1.73
VPS13A-208ENST00000423463 ABCC8Q09428 1581 aa4.25□□□□□ -1.73
VPS13A-208ENST00000423463 ZIC5Q96T25 663 aa4.25□□□□□ -1.73
VPS13A-208ENST00000423463 ZDHHC3Q9NYG2 299 aa4.25□□□□□ -1.73
VPS13A-208ENST00000423463 ATP2B4P23634 1241 aa4.25□□□□□ -1.73
VPS13A-208ENST00000423463 NAA30Q147X3 362 aaPredicted RBP4.25□□□□□ -1.73
VPS13A-208ENST00000423463 POTEAQ6S8J7 498 aa4.25□□□□□ -1.73
VPS13A-208ENST00000423463 C7orf43Q8WVR3 580 aa4.25□□□□□ -1.73
VPS13A-208ENST00000423463 ZCCHC2Q9C0B9 1178 aaKnown RBP4.25□□□□□ -1.73
VPS13A-208ENST00000423463 QTRT2Q9H974 415 aaKnown RBP4.25□□□□□ -1.73
VPS13A-208ENST00000423463 KLK14Q9P0G3 267 aa4.25□□□□□ -1.73
VPS13A-208ENST00000423463 GJA3Q9Y6H8 435 aa4.25□□□□□ -1.73
VPS13A-208ENST00000423463 URB2Q14146 1524 aaKnown RBP4.24□□□□□ -1.73
VPS13A-208ENST00000423463 BNIP3LO60238 219 aa4.24□□□□□ -1.73
VPS13A-208ENST00000423463 HIRAP54198 1017 aaPredicted RBP4.24□□□□□ -1.73
VPS13A-208ENST00000423463 GRIN2CQ14957 1233 aa4.24□□□□□ -1.73
VPS13A-208ENST00000423463 C1orf216Q8TAB5 229 aa4.24□□□□□ -1.73
VPS13A-208ENST00000423463 VTI1AQ96AJ9 217 aa4.24□□□□□ -1.73
VPS13A-208ENST00000423463 SAP130Q9H0E3 1048 aa4.24□□□□□ -1.73
VPS13A-208ENST00000423463 CXXC1Q9P0U4 656 aaPredicted RBP4.24□□□□□ -1.73
VPS13A-208ENST00000423463 CLP1Q92989 425 aaKnown RBP4.24□□□□□ -1.73
VPS13A-208ENST00000423463 LRFN2Q9ULH4 789 aa4.24□□□□□ -1.73
VPS13A-208ENST00000423463 KHNYNO15037 678 aaKnown RBP4.23□□□□□ -1.73
VPS13A-208ENST00000423463 FOXO3O43524 673 aa4.23□□□□□ -1.73
VPS13A-208ENST00000423463 DGKZQ13574 1117 aa4.23□□□□□ -1.73
VPS13A-208ENST00000423463 SEPT3Q9UH03 358 aa4.23□□□□□ -1.73
VPS13A-208ENST00000423463 CD33P20138 364 aa4.23□□□□□ -1.73
VPS13A-208ENST00000423463 TRERF1Q96PN7 1200 aa4.23□□□□□ -1.73
VPS13A-208ENST00000423463 STRN4Q9NRL3 753 aa4.23□□□□□ -1.73
VPS13A-208ENST00000423463 BCS1LQ9Y276 419 aa4.23□□□□□ -1.73
VPS13A-208ENST00000423463 PRDM2Q13029 1718 aa4.23□□□□□ -1.73
VPS13A-208ENST00000423463 TOPBP1Q92547 1522 aa4.23□□□□□ -1.73
VPS13A-208ENST00000423463 ATXN7O15265 892 aaPredicted RBP4.23□□□□□ -1.73
VPS13A-208ENST00000423463 MAPTP10636 758 aaKnown RBP4.23□□□□□ -1.73
VPS13A-208ENST00000423463 MTMR3Q13615 1198 aa4.23□□□□□ -1.73
VPS13A-208ENST00000423463 FOXR1Q6PIV2 292 aa4.23□□□□□ -1.73
VPS13A-208ENST00000423463 STAG2Q8N3U4 1231 aa4.23□□□□□ -1.73
VPS13A-208ENST00000423463 SUSD3Q96L08 255 aa4.23□□□□□ -1.73
VPS13A-208ENST00000423463 MX2P20592 715 aa4.22□□□□□ -1.73
VPS13A-208ENST00000423463 RTN1Q16799 776 aa4.22□□□□□ -1.73
VPS13A-208ENST00000423463 FAM26DQ5JW98 314 aa4.22□□□□□ -1.73
VPS13A-208ENST00000423463 COX20Q5RI15 118 aa4.22□□□□□ -1.73
VPS13A-208ENST00000423463 PHLDB3Q6NSJ2 640 aa4.22□□□□□ -1.73
VPS13A-208ENST00000423463 RAB44Q7Z6P3 723 aaPredicted RBP4.22□□□□□ -1.73
VPS13A-208ENST00000423463 NLRP8Q86W28 1048 aa4.22□□□□□ -1.73
VPS13A-208ENST00000423463 FGFR3P22607 806 aa4.22□□□□□ -1.73
VPS13A-208ENST00000423463 CTBSQ01459 385 aa4.22□□□□□ -1.73
VPS13A-208ENST00000423463 GMCL1Q96IK5 515 aa4.22□□□□□ -1.73
VPS13A-208ENST00000423463 CEP63Q96MT8 703 aa4.22□□□□□ -1.73
VPS13A-208ENST00000423463 NEUROD4Q9HD90 331 aa4.22□□□□□ -1.73
VPS13A-208ENST00000423463 NDFIP2Q9NV92 336 aa4.22□□□□□ -1.73
VPS13A-208ENST00000423463 USP20Q9Y2K6 914 aa4.22□□□□□ -1.73
VPS13A-208ENST00000423463 PCDHGC4Q9Y5F7 938 aa4.22□□□□□ -1.73
VPS13A-208ENST00000423463 IFT140Q96RY7 1462 aa4.21□□□□□ -1.73
VPS13A-208ENST00000423463 DNMBPQ6XZF7 1577 aa4.21□□□□□ -1.74
VPS13A-208ENST00000423463 WIPF1O43516 503 aa4.21□□□□□ -1.74
VPS13A-208ENST00000423463 ADAMTS2O95450 1211 aa4.21□□□□□ -1.74
VPS13A-208ENST00000423463 TYRO3Q06418 890 aa4.21□□□□□ -1.74
VPS13A-208ENST00000423463 C1orf53Q5VUE5 145 aa4.21□□□□□ -1.74
VPS13A-208ENST00000423463 FIGNL1Q6PIW4 674 aa4.21□□□□□ -1.74
VPS13A-208ENST00000423463 BRD7Q9NPI1 651 aa4.21□□□□□ -1.74
VPS13A-208ENST00000423463 ATXN7L1Q9ULK2 861 aaPredicted RBP4.21□□□□□ -1.74
VPS13A-208ENST00000423463 IGF1RP08069 1367 aa4.21□□□□□ -1.74
VPS13A-208ENST00000423463 C2CD2LO14523 706 aa4.21□□□□□ -1.74
VPS13A-208ENST00000423463 SSFA2P28290 1259 aa4.21□□□□□ -1.74
VPS13A-208ENST00000423463 TNP2Q05952 138 aa4.21□□□□□ -1.74
VPS13A-208ENST00000423463 LBRQ14739 615 aaKnown RBP4.21□□□□□ -1.74
VPS13A-208ENST00000423463 WHAMMQ8TF30 809 aa4.21□□□□□ -1.74
VPS13A-208ENST00000423463 MBIPQ9NS73 344 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms