RNA–Protein interactions for RNA: ENST00000417285.6

VEGFA-208, Transcript of vascular endothelial growth factor A, human

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,081 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-208	ENST00000417285	HSPA6	P17066	643 aa		33.32	■■■□□ 2.92
VEGFA-208	ENST00000417285	STYK1	Q6J9G0	422 aa		33.32	■■■□□ 2.92
VEGFA-208	ENST00000417285	NMRK2	Q9NPI5	230 aa		33.32	■■■□□ 2.92
VEGFA-208	ENST00000417285	NIP7	Q9Y221	180 aa	Known RBP eCLIP	33.32	■■■□□ 2.92
VEGFA-208	ENST00000417285	DLG5	Q8TDM6	1919 aa		33.31	■■■□□ 2.92
VEGFA-208	ENST00000417285	SRGN	P10124	158 aa		33.3	■■■□□ 2.92
VEGFA-208	ENST00000417285	ZEB1	P37275	1124 aa	Predicted RBP	33.3	■■■□□ 2.92
VEGFA-208	ENST00000417285	TMPO	P42166	694 aa	Known RBP	33.3	■■■□□ 2.92
VEGFA-208	ENST00000417285	ERVV-1	B6SEH8	477 aa		33.29	■■■□□ 2.92
VEGFA-208	ENST00000417285	RASSF7	Q02833	373 aa		33.29	■■■□□ 2.92
VEGFA-208	ENST00000417285	MASTL	Q96GX5	879 aa		33.29	■■■□□ 2.92
VEGFA-208	ENST00000417285	TSPYL4	Q9UJ04	414 aa		33.29	■■■□□ 2.92
VEGFA-208	ENST00000417285	RRP7A	Q9Y3A4	280 aa	Known RBP	33.28	■■■□□ 2.92
VEGFA-208	ENST00000417285	DLEC1	Q9Y238	1755 aa		33.27	■■■□□ 2.92
VEGFA-208	ENST00000417285	C21orf2	O43822	256 aa		33.27	■■■□□ 2.92
VEGFA-208	ENST00000417285	HLF	Q16534	295 aa		33.26	■■■□□ 2.91
VEGFA-208	ENST00000417285	C16orf71	Q8IYS4	520 aa	Predicted RBP	33.26	■■■□□ 2.91
VEGFA-208	ENST00000417285	KLRG2	A4D1S0	409 aa	Predicted RBP	33.25	■■■□□ 2.91
VEGFA-208	ENST00000417285	WDR43	Q15061	677 aa	Known RBP eCLIP	33.25	■■■□□ 2.91	8e-10	■□□□□ 9.2
VEGFA-208	ENST00000417285	SOGA3	Q5TF21	947 aa		33.25	■■■□□ 2.91
VEGFA-208	ENST00000417285	NGEF	Q8N5V2	710 aa		33.25	■■■□□ 2.91
VEGFA-208	ENST00000417285	ERBB4	Q15303	1308 aa		33.25	■■■□□ 2.91
VEGFA-208	ENST00000417285	BCOR	Q6W2J9	1755 aa		33.24	■■■□□ 2.91
VEGFA-208	ENST00000417285	NFKBIE	O00221	500 aa		33.24	■■■□□ 2.91
VEGFA-208	ENST00000417285	KIF6	Q6ZMV9	814 aa		33.24	■■■□□ 2.91
VEGFA-208	ENST00000417285	RBM46	Q8TBY0	533 aa	Known RBP	33.23	■■■□□ 2.91
VEGFA-208	ENST00000417285	RUNDC1	Q96C34	613 aa		33.23	■■■□□ 2.91
VEGFA-208	ENST00000417285	ANKRD31	Q8N7Z5	1873 aa		33.22	■■■□□ 2.91
VEGFA-208	ENST00000417285	NPR1	P16066	1061 aa		33.22	■■■□□ 2.91
VEGFA-208	ENST00000417285	GTF2E1	P29083	439 aa	Predicted RBP	33.22	■■■□□ 2.91
VEGFA-208	ENST00000417285	PRELP	P51888	382 aa		33.22	■■■□□ 2.91
VEGFA-208	ENST00000417285	PRKRIP1	Q9H875	184 aa	Predicted RBP	33.22	■■■□□ 2.91
VEGFA-208	ENST00000417285	RRAGC	Q9HB90	399 aa		33.22	■■■□□ 2.91
VEGFA-208	ENST00000417285	ZNF219	Q9P2Y4	722 aa	Predicted RBP	33.22	■■■□□ 2.91
VEGFA-208	ENST00000417285	MAP3K15	Q6ZN16	1313 aa		33.22	■■■□□ 2.91
VEGFA-208	ENST00000417285	KDM3B	Q7LBC6	1761 aa		33.21	■■■□□ 2.91
VEGFA-208	ENST00000417285	SBF1	O95248	1867 aa		33.21	■■■□□ 2.91
VEGFA-208	ENST00000417285	MYL6B	P14649	208 aa		33.21	■■■□□ 2.91
VEGFA-208	ENST00000417285	PRPF40B	Q6NWY9	871 aa	Known RBP	33.21	■■■□□ 2.91
VEGFA-208	ENST00000417285	NYX	Q9GZU5	481 aa		33.21	■■■□□ 2.91
VEGFA-208	ENST00000417285	GLTPD2	A6NH11	291 aa		33.2	■■■□□ 2.91
VEGFA-208	ENST00000417285	LTBP3	Q9NS15	1303 aa		33.19	■■■□□ 2.9
VEGFA-208	ENST00000417285	FAM177B	A6PVY3	158 aa		33.18	■■■□□ 2.9
VEGFA-208	ENST00000417285	NEUROD2	Q15784	382 aa		33.18	■■■□□ 2.9
VEGFA-208	ENST00000417285	TTLL7	Q6ZT98	887 aa		33.18	■■■□□ 2.9
VEGFA-208	ENST00000417285	CCDC146	Q8IYE0	955 aa		33.18	■■■□□ 2.9
VEGFA-208	ENST00000417285	ADAMTS8	Q9UP79	889 aa		33.18	■■■□□ 2.9
VEGFA-208	ENST00000417285	APLP1	P51693	650 aa		33.17	■■■□□ 2.9
VEGFA-208	ENST00000417285	TAOK3	Q9H2K8	898 aa		33.17	■■■□□ 2.9
VEGFA-208	ENST00000417285	LAMB4	A4D0S4	1761 aa		33.16	■■■□□ 2.9
VEGFA-208	ENST00000417285	DPY19L2	Q6NUT2	758 aa		33.16	■■■□□ 2.9
VEGFA-208	ENST00000417285	EIF2S2	P20042	333 aa	Known RBP	33.15	■■■□□ 2.9
VEGFA-208	ENST00000417285	ALDH1B1	P30837	517 aa		33.15	■■■□□ 2.9
VEGFA-208	ENST00000417285	FSTL1	Q12841	308 aa		33.15	■■■□□ 2.9
VEGFA-208	ENST00000417285	C7orf43	Q8WVR3	580 aa		33.15	■■■□□ 2.9
VEGFA-208	ENST00000417285	VEGFA	P15692	232 aa	Predicted RBP	33.14	■■■□□ 2.9
VEGFA-208	ENST00000417285	ERFE	Q4G0M1	354 aa		33.14	■■■□□ 2.9
VEGFA-208	ENST00000417285	CHL1	O00533	1208 aa		33.13	■■■□□ 2.89
VEGFA-208	ENST00000417285	GIGYF2	Q6Y7W6	1299 aa	Known RBP	33.13	■■■□□ 2.89
VEGFA-208	ENST00000417285	ZBTB3	Q9H5J0	574 aa		33.13	■■■□□ 2.89
VEGFA-208	ENST00000417285	TRIM35	Q9UPQ4	493 aa		33.12	■■■□□ 2.89
VEGFA-208	ENST00000417285	PDIA6	Q15084	440 aa		33.11	■■■□□ 2.89
VEGFA-208	ENST00000417285	CCDC93	Q567U6	631 aa		33.11	■■■□□ 2.89
VEGFA-208	ENST00000417285	ZNF34	Q8IZ26	560 aa		33.11	■■■□□ 2.89
VEGFA-208	ENST00000417285	COL11A2	P13942	1736 aa	Predicted RBP	33.11	■■■□□ 2.89
VEGFA-208	ENST00000417285	LRP10	Q7Z4F1	713 aa		33.09	■■■□□ 2.89
VEGFA-208	ENST00000417285	GPT	P24298	496 aa		33.08	■■■□□ 2.89
VEGFA-208	ENST00000417285	CRY2	Q49AN0	593 aa		33.08	■■■□□ 2.89
VEGFA-208	ENST00000417285	RTKN2	Q8IZC4	609 aa		33.08	■■■□□ 2.89
VEGFA-208	ENST00000417285	IBTK	Q9P2D0	1353 aa	Predicted RBP	33.08	■■■□□ 2.89
VEGFA-208	ENST00000417285	SLX4	Q8IY92	1834 aa		33.07	■■■□□ 2.89
VEGFA-208	ENST00000417285	PARP10	Q53GL7	1025 aa		33.07	■■■□□ 2.88
VEGFA-208	ENST00000417285	PPP1R42	Q7Z4L9	355 aa		33.07	■■■□□ 2.88
VEGFA-208	ENST00000417285	NUTM1	Q86Y26	1132 aa		33.07	■■■□□ 2.88
VEGFA-208	ENST00000417285	SUSD4	Q5VX71	490 aa		33.06	■■■□□ 2.88
VEGFA-208	ENST00000417285	SMC1B	Q8NDV3	1235 aa		33.06	■■■□□ 2.88
VEGFA-208	ENST00000417285	LAS1L	Q9Y4W2	734 aa	Known RBP	33.06	■■■□□ 2.88
VEGFA-208	ENST00000417285	UBN2	Q6ZU65	1347 aa		33.04	■■■□□ 2.88
VEGFA-208	ENST00000417285	FER1L6	Q2WGJ9	1857 aa		33.04	■■■□□ 2.88
VEGFA-208	ENST00000417285	HOXA10	P31260	410 aa	Predicted RBP	33.03	■■■□□ 2.88
VEGFA-208	ENST00000417285	FKBP4	Q02790	459 aa	Known RBP eCLIP	33.03	■■■□□ 2.88
VEGFA-208	ENST00000417285	PROSER3	Q2NL68	480 aa		33.03	■■■□□ 2.88
VEGFA-208	ENST00000417285	DDX21	Q9NR30	783 aa	Known RBP eCLIP	33.03	■■■□□ 2.88
VEGFA-208	ENST00000417285	TNRC6C	Q9HCJ0	1690 aa	Known RBP	33.03	■■■□□ 2.88
VEGFA-208	ENST00000417285	COPS6	Q7L5N1	327 aa		33.02	■■■□□ 2.88
VEGFA-208	ENST00000417285	RPGR	Q92834	1020 aa	Known RBP	33.02	■■■□□ 2.88
VEGFA-208	ENST00000417285	CFAP44	Q96MT7	982 aa		33.02	■■■□□ 2.88
VEGFA-208	ENST00000417285	NUP98	P52948	1817 aa		33.01	■■■□□ 2.87
VEGFA-208	ENST00000417285	HOXB7	P09629	217 aa		33.01	■■■□□ 2.87
VEGFA-208	ENST00000417285	HSP90AB3P	Q58FF7	597 aa		33.01	■■■□□ 2.87
VEGFA-208	ENST00000417285	CC2D2B	Q6DHV5	1058 aa		33.01	■■■□□ 2.87
VEGFA-208	ENST00000417285	NECTIN2	Q92692	538 aa		33.01	■■■□□ 2.87
VEGFA-208	ENST00000417285	RIC1	Q4ADV7	1423 aa		33.01	■■■□□ 2.87
VEGFA-208	ENST00000417285	NTSR2	O95665	410 aa		33	■■■□□ 2.87
VEGFA-208	ENST00000417285	ANXA1	P04083	346 aa		33	■■■□□ 2.87
VEGFA-208	ENST00000417285	UTP14A	Q9BVJ6	771 aa	Known RBP	33	■■■□□ 2.87
VEGFA-208	ENST00000417285	CCDC88A	Q3V6T2	1871 aa		32.99	■■■□□ 2.87
VEGFA-208	ENST00000417285	ABCC12	Q96J65	1359 aa		32.99	■■■□□ 2.87
VEGFA-208	ENST00000417285	GRIPAP1	Q4V328	841 aa		32.99	■■■□□ 2.87
VEGFA-208	ENST00000417285	POTEC	B2RU33	542 aa		32.98	■■■□□ 2.87

Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms