RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 ANXA1P04083 346 aa29.75■■■□□ 2.35
SMARCB1-205ENST00000417137 HNRNPUQ00839 825 aaKnown RBP eCLIP29.75■■■□□ 2.35
SMARCB1-205ENST00000417137 NFIXQ14938 502 aa29.75■■■□□ 2.35
SMARCB1-205ENST00000417137 LRP10Q7Z4F1 713 aa29.75■■■□□ 2.35
SMARCB1-205ENST00000417137 KLHL34Q8N239 644 aa29.75■■■□□ 2.35
SMARCB1-205ENST00000417137 MAP3K15Q6ZN16 1313 aa29.74■■■□□ 2.35
SMARCB1-205ENST00000417137 TTLL7Q6ZT98 887 aa29.74■■■□□ 2.35
SMARCB1-205ENST00000417137 SLFN5Q08AF3 891 aa29.73■■■□□ 2.35
SMARCB1-205ENST00000417137 BICDL1Q6ZP65 573 aa29.73■■■□□ 2.35
SMARCB1-205ENST00000417137 COPS6Q7L5N1 327 aa29.73■■■□□ 2.35
SMARCB1-205ENST00000417137 SETDB2Q96T68 719 aa29.73■■■□□ 2.35
SMARCB1-205ENST00000417137 STK31Q9BXU1 1019 aa29.73■■■□□ 2.35
SMARCB1-205ENST00000417137 CD2APQ9Y5K6 639 aa29.73■■■□□ 2.35
SMARCB1-205ENST00000417137 AIMP1Q12904 312 aaKnown RBP29.72■■■□□ 2.35
SMARCB1-205ENST00000417137 TBC1D9BQ66K14 1250 aa29.72■■■□□ 2.35
SMARCB1-205ENST00000417137 XAGE3Q8WTP9 111 aa29.72■■■□□ 2.35
SMARCB1-205ENST00000417137 SYT17Q9BSW7 474 aa29.72■■■□□ 2.35
SMARCB1-205ENST00000417137 POLRMTO00411 1230 aaKnown RBP29.71■■■□□ 2.35
SMARCB1-205ENST00000417137 DDR1Q08345 913 aa29.71■■■□□ 2.35
SMARCB1-205ENST00000417137 VAMP4O75379 141 aa29.7■■■□□ 2.35
SMARCB1-205ENST00000417137 ZBTB3Q9H5J0 574 aa29.7■■■□□ 2.35
SMARCB1-205ENST00000417137 HLFQ16534 295 aa29.69■■■□□ 2.34
SMARCB1-205ENST00000417137 SERPINB2P05120 415 aa29.68■■■□□ 2.34
SMARCB1-205ENST00000417137 CDCA7LQ96GN5 454 aa29.68■■■□□ 2.34
SMARCB1-205ENST00000417137 GIGYF2Q6Y7W6 1299 aaKnown RBP29.67■■■□□ 2.34
SMARCB1-205ENST00000417137 NIP7Q9Y221 180 aaKnown RBP eCLIP29.67■■■□□ 2.34
SMARCB1-205ENST00000417137 CARMIL3Q8ND23 1372 aa29.66■■■□□ 2.34
SMARCB1-205ENST00000417137 SCN7AQ01118 1682 aa29.66■■■□□ 2.34
SMARCB1-205ENST00000417137 ANKRD13DQ6ZTN6 518 aa29.65■■■□□ 2.34
SMARCB1-205ENST00000417137 PLBD2Q8NHP8 589 aa29.65■■■□□ 2.34
SMARCB1-205ENST00000417137 SLC4A2P04920 1241 aa29.64■■■□□ 2.34
SMARCB1-205ENST00000417137 HSP90AB3PQ58FF7 597 aa29.64■■■□□ 2.34
SMARCB1-205ENST00000417137 TRMT2AQ8IZ69 625 aaKnown RBP29.64■■■□□ 2.34
SMARCB1-205ENST00000417137 NPHP1O15259 732 aa29.63■■■□□ 2.33
SMARCB1-205ENST00000417137 PHAXQ9H814 394 aaKnown RBP29.63■■■□□ 2.33
SMARCB1-205ENST00000417137 TCERG1O14776 1098 aaKnown RBP29.62■■■□□ 2.33
SMARCB1-205ENST00000417137 DDX58O95786 925 aaKnown RBP29.62■■■□□ 2.33
SMARCB1-205ENST00000417137 TGFB2P61812 414 aa29.61■■■□□ 2.33
SMARCB1-205ENST00000417137 TPTE2Q6XPS3 522 aa29.61■■■□□ 2.33
SMARCB1-205ENST00000417137 NBPF5PQ86XG9 351 aaPredicted RBP29.61■■■□□ 2.33
SMARCB1-205ENST00000417137 BCORQ6W2J9 1755 aa29.61■■■□□ 2.33
SMARCB1-205ENST00000417137 RIC3Q7Z5B4 369 aa29.6■■■□□ 2.33
SMARCB1-205ENST00000417137 ZNF34Q8IZ26 560 aa29.59■■■□□ 2.33
SMARCB1-205ENST00000417137 CNBD1Q8NA66 436 aa29.59■■■□□ 2.33
SMARCB1-205ENST00000417137 ATP10DQ9P241 1426 aa29.59■■■□□ 2.33
SMARCB1-205ENST00000417137 TCIRG1Q13488 830 aa29.58■■■□□ 2.33
SMARCB1-205ENST00000417137 PARP10Q53GL7 1025 aa29.58■■■□□ 2.33
SMARCB1-205ENST00000417137 ZBED9Q6R2W3 1325 aa29.58■■■□□ 2.33
SMARCB1-205ENST00000417137 C10orf71Q711Q0 1435 aa29.58■■■□□ 2.33
SMARCB1-205ENST00000417137 NLGN2Q8NFZ4 835 aa29.58■■■□□ 2.33
SMARCB1-205ENST00000417137 ZNF428Q96B54 188 aa29.58■■■□□ 2.33
SMARCB1-205ENST00000417137 NYXQ9GZU5 481 aa29.58■■■□□ 2.33
SMARCB1-205ENST00000417137 CT47B1P0C2W7 299 aaPredicted RBP29.57■■■□□ 2.32
SMARCB1-205ENST00000417137 GPTP24298 496 aa29.57■■■□□ 2.32
SMARCB1-205ENST00000417137 ST5P78524 1137 aa29.57■■■□□ 2.32
SMARCB1-205ENST00000417137 GTF2E1P29083 439 aaPredicted RBP29.56■■■□□ 2.32
SMARCB1-205ENST00000417137 PRR5LQ6MZQ0 368 aa29.56■■■□□ 2.32
SMARCB1-205ENST00000417137 PPP1R42Q7Z4L9 355 aa29.56■■■□□ 2.32
SMARCB1-205ENST00000417137 FAM177BA6PVY3 158 aa29.54■■■□□ 2.32
SMARCB1-205ENST00000417137 BRIP1Q9BX63 1249 aa29.54■■■□□ 2.32
SMARCB1-205ENST00000417137 FLIIQ13045 1269 aa29.53■■■□□ 2.32
SMARCB1-205ENST00000417137 KSR2Q6VAB6 950 aa29.53■■■□□ 2.32
SMARCB1-205ENST00000417137 PDZRN3Q9UPQ7 1066 aa29.53■■■□□ 2.32
SMARCB1-205ENST00000417137 PDE6BP35913 854 aa29.52■■■□□ 2.32
SMARCB1-205ENST00000417137 UBN2Q6ZU65 1347 aa29.51■■■□□ 2.32
SMARCB1-205ENST00000417137 SUSD4Q5VX71 490 aa29.51■■■□□ 2.31
SMARCB1-205ENST00000417137 G2E3Q7L622 706 aa29.51■■■□□ 2.31
SMARCB1-205ENST00000417137 A0A0G2JLW4 131 aa29.5■■■□□ 2.31
SMARCB1-205ENST00000417137 FKBP5Q13451 457 aaPredicted RBP29.5■■■□□ 2.31
SMARCB1-205ENST00000417137 UTP14AQ9BVJ6 771 aaKnown RBP29.5■■■□□ 2.31
SMARCB1-205ENST00000417137 IBTKQ9P2D0 1353 aaPredicted RBP29.5■■■□□ 2.31
SMARCB1-205ENST00000417137 NUP98P52948 1817 aa29.5■■■□□ 2.31
SMARCB1-205ENST00000417137 NRXN2Q9P2S2 1712 aa29.49■■■□□ 2.31
SMARCB1-205ENST00000417137 PI4KAP2A4QPH2 592 aa29.49■■■□□ 2.31
SMARCB1-205ENST00000417137 DPEP1P16444 411 aa29.49■■■□□ 2.31
SMARCB1-205ENST00000417137 TRIM28Q13263 835 aaKnown RBP29.49■■■□□ 2.31
SMARCB1-205ENST00000417137 NLRP10Q86W26 655 aa29.49■■■□□ 2.31
SMARCB1-205ENST00000417137 PI4KAP1Q8N8J0 262 aa29.49■■■□□ 2.31
SMARCB1-205ENST00000417137 METTL22Q9BUU2 404 aaPredicted RBP29.49■■■□□ 2.31
SMARCB1-205ENST00000417137 MAP3K2Q9Y2U5 619 aa29.49■■■□□ 2.31
SMARCB1-205ENST00000417137 H0YIN7 160 aa29.48■■■□□ 2.31
SMARCB1-205ENST00000417137 GPR162Q16538 588 aa29.48■■■□□ 2.31
SMARCB1-205ENST00000417137 ALDH1L2Q3SY69 923 aa29.48■■■□□ 2.31
SMARCB1-205ENST00000417137 CCDC24Q8N4L8 307 aa29.48■■■□□ 2.31
SMARCB1-205ENST00000417137 ISCA1Q9BUE6 129 aa29.48■■■□□ 2.31
SMARCB1-205ENST00000417137 NEXNQ0ZGT2 675 aa29.47■■■□□ 2.31
SMARCB1-205ENST00000417137 ZNF784Q8NCA9 323 aaPredicted RBP29.47■■■□□ 2.31
SMARCB1-205ENST00000417137 RNF123Q5XPI4 1314 aa29.46■■■□□ 2.31
SMARCB1-205ENST00000417137 ATP5J2-PTCD1G3V325 749 aa29.46■■■□□ 2.31
SMARCB1-205ENST00000417137 C2CD5Q86YS7 1000 aa29.46■■■□□ 2.31
SMARCB1-205ENST00000417137 PELP1Q8IZL8 1130 aaKnown RBP29.46■■■□□ 2.31
SMARCB1-205ENST00000417137 MYD88Q99836 296 aa29.46■■■□□ 2.31
SMARCB1-205ENST00000417137 PIM2Q9P1W9 311 aa29.46■■■□□ 2.31
SMARCB1-205ENST00000417137 PXDNLA1KZ92 1463 aa29.46■■■□□ 2.31
SMARCB1-205ENST00000417137 AFDNP55196 1824 aaKnown RBP29.45■■■□□ 2.31
SMARCB1-205ENST00000417137 KIF13BQ9NQT8 1826 aa29.45■■■□□ 2.31
SMARCB1-205ENST00000417137 NTSR2O95665 410 aa29.45■■■□□ 2.31
SMARCB1-205ENST00000417137 NUTM1Q86Y26 1132 aa29.45■■■□□ 2.31
SMARCB1-205ENST00000417137 TRMT112Q9UI30 125 aaKnown RBP29.45■■■□□ 2.31
SMARCB1-205ENST00000417137 CHRNA5P30532 468 aa29.44■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms