RNA–Protein interactions for RNA: ENST00000411464.3

MRPL55-220, Transcript of mitochondrial ribosomal protein L55, humanhuman

TSL 3

Gene MRPL55, Length 767 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL55-220ENST00000411464 PRPF40BQ6NWY9 871 aaKnown RBP22.33■■□□□ 1.17
MRPL55-220ENST00000411464 CLEC4GQ6UXB4 293 aa22.33■■□□□ 1.17
MRPL55-220ENST00000411464 NBPF5PQ86XG9 351 aaPredicted RBP22.33■■□□□ 1.17
MRPL55-220ENST00000411464 ZNF652Q9Y2D9 606 aa22.33■■□□□ 1.17
MRPL55-220ENST00000411464 PIP4K2AP48426 406 aaPredicted RBP22.32■■□□□ 1.16
MRPL55-220ENST00000411464 DLEC1Q9Y238 1755 aa22.31■■□□□ 1.16
MRPL55-220ENST00000411464 MCM10Q7L590 875 aa22.31■■□□□ 1.16
MRPL55-220ENST00000411464 PRAMEF22A3QJZ6 481 aa22.3■■□□□ 1.16
MRPL55-220ENST00000411464 DDNO94850 711 aaPredicted RBP22.29■■□□□ 1.16
MRPL55-220ENST00000411464 TPTE2Q6XPS3 522 aa22.29■■□□□ 1.16
MRPL55-220ENST00000411464 VIRMAQ69YN4 1812 aaKnown RBP22.29■■□□□ 1.16
MRPL55-220ENST00000411464 CHADLQ6NUI6 762 aa22.28■■□□□ 1.16
MRPL55-220ENST00000411464 NPR1P16066 1061 aa22.27■■□□□ 1.16
MRPL55-220ENST00000411464 TNS4Q8IZW8 715 aa22.27■■□□□ 1.16
MRPL55-220ENST00000411464 NIP7Q9Y221 180 aaKnown RBP eCLIP22.27■■□□□ 1.16
MRPL55-220ENST00000411464 SCN7AQ01118 1682 aa22.26■■□□□ 1.15
MRPL55-220ENST00000411464 HTATSF1O43719 755 aaKnown RBP22.26■■□□□ 1.15
MRPL55-220ENST00000411464 PPP2R1AP30153 589 aa22.26■■□□□ 1.15
MRPL55-220ENST00000411464 DCTN1Q14203 1278 aa22.26■■□□□ 1.15
MRPL55-220ENST00000411464 CCDC93Q567U6 631 aa22.26■■□□□ 1.15
MRPL55-220ENST00000411464 IQCA1LA6NCM1 817 aa22.25■■□□□ 1.15
MRPL55-220ENST00000411464 HSPA1AP0DMV8 641 aaKnown RBP22.25■■□□□ 1.15
MRPL55-220ENST00000411464 HSPA1BP0DMV9 641 aaKnown RBP22.25■■□□□ 1.15
MRPL55-220ENST00000411464 C7orf43Q8WVR3 580 aa22.25■■□□□ 1.15
MRPL55-220ENST00000411464 ANKRD31Q8N7Z5 1873 aa22.24■■□□□ 1.15
MRPL55-220ENST00000411464 NBPF26B4DH59 902 aa22.24■■□□□ 1.15
MRPL55-220ENST00000411464 RGL2O15211 777 aa22.24■■□□□ 1.15
MRPL55-220ENST00000411464 TAF7Q15545 349 aaPredicted RBP22.24■■□□□ 1.15
MRPL55-220ENST00000411464 NBPF10Q6P3W6 841 aaKnown RBP22.24■■□□□ 1.15
MRPL55-220ENST00000411464 NBPF15Q8N660 670 aa22.24■■□□□ 1.15
MRPL55-220ENST00000411464 CREBZFQ9NS37 354 aa22.24■■□□□ 1.15
MRPL55-220ENST00000411464 PCNTO95613 3336 aa22.24■■□□□ 1.15
MRPL55-220ENST00000411464 TIAM2Q8IVF5 1701 aa22.23■■□□□ 1.15
MRPL55-220ENST00000411464 SIPA1L3O60292 1781 aaPredicted RBP22.23■■□□□ 1.15
MRPL55-220ENST00000411464 KLRG2A4D1S0 409 aaPredicted RBP22.23■■□□□ 1.15
MRPL55-220ENST00000411464 FAM177BA6PVY3 158 aa22.23■■□□□ 1.15
MRPL55-220ENST00000411464 CAPN15O75808 1086 aa22.23■■□□□ 1.15
MRPL55-220ENST00000411464 GTF2E1P29083 439 aaPredicted RBP22.23■■□□□ 1.15
MRPL55-220ENST00000411464 FKBP4Q02790 459 aaKnown RBP eCLIP22.22■■□□□ 1.15
MRPL55-220ENST00000411464 RTKN2Q8IZC4 609 aa22.22■■□□□ 1.15
MRPL55-220ENST00000411464 NEFMP07197 916 aa22.21■■□□□ 1.15
MRPL55-220ENST00000411464 POTEIP0CG38 1075 aa22.21■■□□□ 1.15
MRPL55-220ENST00000411464 POTEJP0CG39 1038 aa22.21■■□□□ 1.15
MRPL55-220ENST00000411464 L3MBTL3Q96JM7 780 aaPredicted RBP22.21■■□□□ 1.15
MRPL55-220ENST00000411464 ALDH1B1P30837 517 aa22.2■■□□□ 1.14
MRPL55-220ENST00000411464 LDHDQ86WU2 507 aa22.2■■□□□ 1.14
MRPL55-220ENST00000411464 ZNF277Q9NRM2 450 aaPredicted RBP22.2■■□□□ 1.14
MRPL55-220ENST00000411464 MIS18AQ9NYP9 233 aa22.2■■□□□ 1.14
MRPL55-220ENST00000411464 MKRN1Q9UHC7 482 aaKnown RBP22.2■■□□□ 1.14
MRPL55-220ENST00000411464 COL11A2P13942 1736 aaPredicted RBP22.2■■□□□ 1.14
MRPL55-220ENST00000411464 HLFQ16534 295 aa22.19■■□□□ 1.14
MRPL55-220ENST00000411464 TAF1DQ9H5J8 278 aaPredicted RBP22.19■■□□□ 1.14
MRPL55-220ENST00000411464 SLX4Q8IY92 1834 aa22.18■■□□□ 1.14
MRPL55-220ENST00000411464 PNISRQ8TF01 805 aaKnown RBP22.18■■□□□ 1.14
MRPL55-220ENST00000411464 FER1L6Q2WGJ9 1857 aa22.17■■□□□ 1.14
MRPL55-220ENST00000411464 CCDC88AQ3V6T2 1871 aa22.17■■□□□ 1.14
MRPL55-220ENST00000411464 OLFM4Q6UX06 510 aa22.17■■□□□ 1.14
MRPL55-220ENST00000411464 NGEFQ8N5V2 710 aa22.17■■□□□ 1.14
MRPL55-220ENST00000411464 EAPPQ56P03 285 aaPredicted RBP22.16■■□□□ 1.14
MRPL55-220ENST00000411464 NYXQ9GZU5 481 aa22.16■■□□□ 1.14
MRPL55-220ENST00000411464 HACL1Q9UJ83 578 aa22.16■■□□□ 1.14
MRPL55-220ENST00000411464 ERVV-1B6SEH8 477 aa22.15■■□□□ 1.14
MRPL55-220ENST00000411464 SYNE4Q8N205 404 aa22.15■■□□□ 1.14
MRPL55-220ENST00000411464 CLEC11AQ9Y240 323 aa22.15■■□□□ 1.14
MRPL55-220ENST00000411464 ZNF541Q9H0D2 1346 aa22.14■■□□□ 1.14
MRPL55-220ENST00000411464 IARSP41252 1262 aaKnown RBP22.14■■□□□ 1.13
MRPL55-220ENST00000411464 RRP7AQ9Y3A4 280 aaKnown RBP22.14■■□□□ 1.13
MRPL55-220ENST00000411464 BCORQ6W2J9 1755 aa22.14■■□□□ 1.13
MRPL55-220ENST00000411464 PASKQ96RG2 1323 aa22.13■■□□□ 1.13
MRPL55-220ENST00000411464 KIF6Q6ZMV9 814 aa22.13■■□□□ 1.13
MRPL55-220ENST00000411464 TMEM88BA6NKF7 163 aa22.12■■□□□ 1.13
MRPL55-220ENST00000411464 FZD9O00144 591 aa22.12■■□□□ 1.13
MRPL55-220ENST00000411464 EPHX2P34913 555 aa22.12■■□□□ 1.13
MRPL55-220ENST00000411464 PNMA8AQ86V59 439 aaPredicted RBP22.12■■□□□ 1.13
MRPL55-220ENST00000411464 NUTM1Q86Y26 1132 aa22.12■■□□□ 1.13
MRPL55-220ENST00000411464 JDP2Q8WYK2 163 aa22.12■■□□□ 1.13
MRPL55-220ENST00000411464 RPGRQ92834 1020 aaKnown RBP22.12■■□□□ 1.13
MRPL55-220ENST00000411464 DICER1Q9UPY3 1922 aaKnown RBP22.12■■□□□ 1.13
MRPL55-220ENST00000411464 MAP3K15Q6ZN16 1313 aa22.11■■□□□ 1.13
MRPL55-220ENST00000411464 ITGBL1O95965 494 aaPredicted RBP22.11■■□□□ 1.13
MRPL55-220ENST00000411464 CRY2Q49AN0 593 aa22.11■■□□□ 1.13
MRPL55-220ENST00000411464 CC2D2BQ6DHV5 1058 aa22.11■■□□□ 1.13
MRPL55-220ENST00000411464 PSMD1Q99460 953 aa22.11■■□□□ 1.13
MRPL55-220ENST00000411464 CNTNAP1P78357 1384 aa22.11■■□□□ 1.13
MRPL55-220ENST00000411464 MYL6BP14649 208 aa22.1■■□□□ 1.13
MRPL55-220ENST00000411464 EIF4A1P60842 406 aaKnown RBP22.1■■□□□ 1.13
MRPL55-220ENST00000411464 GPC2Q8N158 579 aa22.1■■□□□ 1.13
MRPL55-220ENST00000411464 TTLL7Q6ZT98 887 aa22.09■■□□□ 1.13
MRPL55-220ENST00000411464 RNF123Q5XPI4 1314 aa22.08■■□□□ 1.13
MRPL55-220ENST00000411464 GPTP24298 496 aa22.08■■□□□ 1.13
MRPL55-220ENST00000411464 NFE2L2Q16236 605 aa22.08■■□□□ 1.13
MRPL55-220ENST00000411464 GRIPAP1Q4V328 841 aa22.08■■□□□ 1.13
MRPL55-220ENST00000411464 PNNQ9H307 717 aaKnown RBP22.08■■□□□ 1.13
MRPL55-220ENST00000411464 ZBTB3Q9H5J0 574 aa22.08■■□□□ 1.13
MRPL55-220ENST00000411464 HOXA10P31260 410 aaPredicted RBP22.07■■□□□ 1.12
MRPL55-220ENST00000411464 VEGFBP49765 207 aa22.07■■□□□ 1.12
MRPL55-220ENST00000411464 EIF6P56537 245 aaKnown RBP22.07■■□□□ 1.12
MRPL55-220ENST00000411464 CNTROBQ8N137 903 aa22.07■■□□□ 1.12
MRPL55-220ENST00000411464 AIDAQ96BJ3 306 aa22.07■■□□□ 1.12
MRPL55-220ENST00000411464 PLEKHF1Q96S99 279 aa22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms