RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 TRPM3Q9HCF6 1732 aaPredicted RBP6.03□□□□□ -1.44
SF3B1-202ENST00000409915 AP1G2O75843 785 aa6.03□□□□□ -1.44
SF3B1-202ENST00000409915 RECKO95980 971 aa6.03□□□□□ -1.44
SF3B1-202ENST00000409915 NEFLP07196 543 aa6.03□□□□□ -1.44
SF3B1-202ENST00000409915 MARSP56192 900 aaKnown RBP6.03□□□□□ -1.44
SF3B1-202ENST00000409915 VAC14Q08AM6 782 aa6.03□□□□□ -1.44
SF3B1-202ENST00000409915 DIXDC1Q155Q3 683 aa6.03□□□□□ -1.44
SF3B1-202ENST00000409915 FAM161AQ3B820 660 aa6.03□□□□□ -1.44
SF3B1-202ENST00000409915 NPAS4Q8IUM7 802 aa6.03□□□□□ -1.44
SF3B1-202ENST00000409915 MICAL1Q8TDZ2 1067 aa6.03□□□□□ -1.44
SF3B1-202ENST00000409915 LRRC59Q96AG4 307 aaKnown RBP6.03□□□□□ -1.44
SF3B1-202ENST00000409915 UCN2Q96RP3 112 aa6.03□□□□□ -1.44
SF3B1-202ENST00000409915 ACEP12821 1306 aa6.02□□□□□ -1.45
SF3B1-202ENST00000409915 SPATA31A3Q5VYP0 1347 aa6.02□□□□□ -1.45
SF3B1-202ENST00000409915 FANCIQ9NVI1 1328 aa6.02□□□□□ -1.45
SF3B1-202ENST00000409915 ANKRD33BA6NCL7 494 aa6.02□□□□□ -1.45
SF3B1-202ENST00000409915 SOWAHDA6NJG2 315 aa6.02□□□□□ -1.45
SF3B1-202ENST00000409915 ADAMTS2O95450 1211 aa6.02□□□□□ -1.45
SF3B1-202ENST00000409915 USP17L8P0C7I0 530 aa6.02□□□□□ -1.45
SF3B1-202ENST00000409915 HSPA5P11021 654 aaKnown RBP6.02□□□□□ -1.45
SF3B1-202ENST00000409915 PSME1Q06323 249 aa6.02□□□□□ -1.45
SF3B1-202ENST00000409915 FAM98CQ17RN3 349 aaKnown RBP6.02□□□□□ -1.45
SF3B1-202ENST00000409915 MEX3CQ5U5Q3 659 aaKnown RBP6.02□□□□□ -1.45
SF3B1-202ENST00000409915 NUTM2GQ5VZR2 741 aa6.02□□□□□ -1.45
SF3B1-202ENST00000409915 PHLDB3Q6NSJ2 640 aa6.02□□□□□ -1.45
SF3B1-202ENST00000409915 RIC3Q7Z5B4 369 aa6.02□□□□□ -1.45
SF3B1-202ENST00000409915 CABLES1Q8TDN4 633 aa6.02□□□□□ -1.45
SF3B1-202ENST00000409915 NLRP7Q8WX94 980 aa6.02□□□□□ -1.45
SF3B1-202ENST00000409915 ALG2Q9H553 416 aa6.02□□□□□ -1.45
SF3B1-202ENST00000409915 PRDM16Q9HAZ2 1276 aa6.02□□□□□ -1.45
SF3B1-202ENST00000409915 CABP1Q9NZU7 370 aa6.02□□□□□ -1.45
SF3B1-202ENST00000409915 RIPOR2Q9Y4F9 1068 aa6.02□□□□□ -1.45
SF3B1-202ENST00000409915 POLR3AO14802 1390 aaPredicted RBP6.02□□□□□ -1.45
SF3B1-202ENST00000409915 ATAD2Q6PL18 1390 aa6.02□□□□□ -1.45
SF3B1-202ENST00000409915 SPATA31A6Q5VVP1 1343 aa6.01□□□□□ -1.45
SF3B1-202ENST00000409915 COL22A1Q8NFW1 1626 aaPredicted RBP6.01□□□□□ -1.45
SF3B1-202ENST00000409915 LOC102724159A0A0B4J2E5 919 aa6.01□□□□□ -1.45
SF3B1-202ENST00000409915 SOWAHBA6NEL2 793 aa6.01□□□□□ -1.45
SF3B1-202ENST00000409915 ARID4AP29374 1257 aaPredicted RBP6.01□□□□□ -1.45
SF3B1-202ENST00000409915 PWP2Q15269 919 aaKnown RBP6.01□□□□□ -1.45
SF3B1-202ENST00000409915 TMEM164Q5U3C3 297 aa6.01□□□□□ -1.45
SF3B1-202ENST00000409915 NUDT18Q6ZVK8 323 aa6.01□□□□□ -1.45
SF3B1-202ENST00000409915 TTC13Q8NBP0 860 aa6.01□□□□□ -1.45
SF3B1-202ENST00000409915 TMC1Q8TDI8 760 aa6.01□□□□□ -1.45
SF3B1-202ENST00000409915 WBP1LQ9NX94 342 aa6.01□□□□□ -1.45
SF3B1-202ENST00000409915 PPME1Q9Y570 386 aa6.01□□□□□ -1.45
SF3B1-202ENST00000409915 MAFBQ9Y5Q3 323 aaPredicted RBP6.01□□□□□ -1.45
SF3B1-202ENST00000409915 SBNO1A3KN83 1393 aa6.01□□□□□ -1.45
SF3B1-202ENST00000409915 CD163L1Q9NR16 1453 aa6.01□□□□□ -1.45
SF3B1-202ENST00000409915 ALS2Q96Q42 1657 aa6.01□□□□□ -1.45
SF3B1-202ENST00000409915 USP6P35125 1406 aa6□□□□□ -1.45
SF3B1-202ENST00000409915 ABCA3Q99758 1704 aa6□□□□□ -1.45
SF3B1-202ENST00000409915 RAB11FIP3O75154 756 aa6□□□□□ -1.45
SF3B1-202ENST00000409915 ERCC5P28715 1186 aaPredicted RBP6□□□□□ -1.45
SF3B1-202ENST00000409915 CSPP1Q1MSJ5 1256 aa6□□□□□ -1.45
SF3B1-202ENST00000409915 SAMD7Q7Z3H4 446 aa6□□□□□ -1.45
SF3B1-202ENST00000409915 LAPTM4BQ86VI4 370 aa6□□□□□ -1.45
SF3B1-202ENST00000409915 TATDN2Q93075 761 aa6□□□□□ -1.45
SF3B1-202ENST00000409915 GJD4Q96KN9 370 aaPredicted RBP6□□□□□ -1.45
SF3B1-202ENST00000409915 SLC12A5Q9H2X9 1139 aa6□□□□□ -1.45
SF3B1-202ENST00000409915 BIN2Q9UBW5 565 aaPredicted RBP6□□□□□ -1.45
SF3B1-202ENST00000409915 RGS17Q9UGC6 210 aaPredicted RBP6□□□□□ -1.45
SF3B1-202ENST00000409915 PNMA3Q9UL41 463 aa6□□□□□ -1.45
SF3B1-202ENST00000409915 A0A1W2PP64 1363 aa6□□□□□ -1.45
SF3B1-202ENST00000409915 ARHGEF10O15013 1369 aa6□□□□□ -1.45
SF3B1-202ENST00000409915 NRKQ7Z2Y5 1582 aa5.99□□□□□ -1.45
SF3B1-202ENST00000409915 EIF4G2P78344 907 aaKnown RBP eCLIP5.99□□□□□ -1.45
SF3B1-202ENST00000409915 IRX6P78412 446 aaPredicted RBP5.99□□□□□ -1.45
SF3B1-202ENST00000409915 TMF1P82094 1093 aa5.99□□□□□ -1.45
SF3B1-202ENST00000409915 TSNAXIP1Q2TAA8 658 aa5.99□□□□□ -1.45
SF3B1-202ENST00000409915 ILDR2Q71H61 639 aa5.99□□□□□ -1.45
SF3B1-202ENST00000409915 NOP9Q86U38 636 aaKnown RBP5.99□□□□□ -1.45
SF3B1-202ENST00000409915 PACS2Q86VP3 889 aa5.99□□□□□ -1.45
SF3B1-202ENST00000409915 STK32AQ8WU08 396 aa5.99□□□□□ -1.45
SF3B1-202ENST00000409915 ZMIZ1Q9ULJ6 1067 aa5.99□□□□□ -1.45
SF3B1-202ENST00000409915 TMA7Q9Y2S6 64 aaKnown RBP5.99□□□□□ -1.45
SF3B1-202ENST00000409915 CRYBG1Q9Y4K1 1723 aa5.99□□□□□ -1.45
SF3B1-202ENST00000409915 CPSF1Q10570 1443 aaKnown RBP5.99□□□□□ -1.45
SF3B1-202ENST00000409915 AFF2P51816 1311 aa5.99□□□□□ -1.45
SF3B1-202ENST00000409915 AKAP12Q02952 1782 aa5.98□□□□□ -1.45
SF3B1-202ENST00000409915 PIK3C2AO00443 1686 aa5.98□□□□□ -1.45
SF3B1-202ENST00000409915 MYOM1P52179 1685 aa5.98□□□□□ -1.45
SF3B1-202ENST00000409915 KTN1Q86UP2 1357 aaKnown RBP5.98□□□□□ -1.45
SF3B1-202ENST00000409915 DEKP35659 375 aaKnown RBP5.98□□□□□ -1.45
SF3B1-202ENST00000409915 SERPINB4P48594 390 aa5.98□□□□□ -1.45
SF3B1-202ENST00000409915 ELOAQ14241 798 aaKnown RBP5.98□□□□□ -1.45
SF3B1-202ENST00000409915 TUSC1Q2TAM9 212 aa5.98□□□□□ -1.45
SF3B1-202ENST00000409915 POTEAQ6S8J7 498 aa5.98□□□□□ -1.45
SF3B1-202ENST00000409915 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.98□□□□□ -1.45
SF3B1-202ENST00000409915 ABTB2Q8N961 1025 aa5.98□□□□□ -1.45
SF3B1-202ENST00000409915 PRR7Q8TB68 274 aa5.98□□□□□ -1.45
SF3B1-202ENST00000409915 RBM46Q8TBY0 533 aaKnown RBP5.98□□□□□ -1.45
SF3B1-202ENST00000409915 DNAJC2Q99543 621 aaKnown RBP5.98□□□□□ -1.45
SF3B1-202ENST00000409915 MYH16Q9H6N6 1097 aa5.98□□□□□ -1.45
SF3B1-202ENST00000409915 RBM27Q9P2N5 1060 aaKnown RBP5.98□□□□□ -1.45
SF3B1-202ENST00000409915 HPS5Q9UPZ3 1129 aa5.98□□□□□ -1.45
SF3B1-202ENST00000409915 MON2Q7Z3U7 1717 aa5.98□□□□□ -1.45
SF3B1-202ENST00000409915 PHRF1Q9P1Y6 1649 aaKnown RBP5.98□□□□□ -1.45
SF3B1-202ENST00000409915 SSH2Q76I76 1423 aa5.98□□□□□ -1.45
SF3B1-202ENST00000409915 TTC21BQ7Z4L5 1316 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms