RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 HSP90AB3PQ58FF7 597 aa14.12□□□□□ -0.15
HMGB1-206ENST00000405805 TRMT1Q9NXH9 659 aaKnown RBP14.12□□□□□ -0.15
HMGB1-206ENST00000405805 ZFYVE9O95405 1425 aa14.11□□□□□ -0.15
HMGB1-206ENST00000405805 EDC4Q6P2E9 1401 aaKnown RBP14.11□□□□□ -0.15
HMGB1-206ENST00000405805 GTF2A1P52655 376 aaPredicted RBP14.11□□□□□ -0.15
HMGB1-206ENST00000405805 PPP1R9BQ96SB3 815 aa14.11□□□□□ -0.15
HMGB1-206ENST00000405805 DEF6Q9H4E7 631 aa14.11□□□□□ -0.15
HMGB1-206ENST00000405805 ROBO2Q9HCK4 1378 aa14.11□□□□□ -0.15
HMGB1-206ENST00000405805 NBPF7P0C2Y1 421 aaPredicted RBP14.11□□□□□ -0.15
HMGB1-206ENST00000405805 HOMER1Q86YM7 354 aa14.11□□□□□ -0.15
HMGB1-206ENST00000405805 DNAAF4Q8WXU2 420 aa14.11□□□□□ -0.15
HMGB1-206ENST00000405805 GTPBP4Q9BZE4 634 aaKnown RBP14.11□□□□□ -0.15
HMGB1-206ENST00000405805 NDUFB9Q9Y6M9 179 aa14.11□□□□□ -0.15
HMGB1-206ENST00000405805 RTL1A6NKG5 1358 aa14.11□□□□□ -0.15
HMGB1-206ENST00000405805 MAP3K11Q16584 847 aa14.11□□□□□ -0.15
HMGB1-206ENST00000405805 RAB11FIP4Q86YS3 637 aa14.11□□□□□ -0.15
HMGB1-206ENST00000405805 CALCOCO1Q9P1Z2 691 aa14.11□□□□□ -0.15
HMGB1-206ENST00000405805 GLRX3O76003 335 aaKnown RBP14.1□□□□□ -0.15
HMGB1-206ENST00000405805 CWF19L2Q2TBE0 894 aaKnown RBP14.1□□□□□ -0.15
HMGB1-206ENST00000405805 CCDC73Q6ZRK6 1079 aa14.1□□□□□ -0.15
HMGB1-206ENST00000405805 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.1□□□□□ -0.15
HMGB1-206ENST00000405805 V9GYY5 206 aaPredicted RBP14.1□□□□□ -0.15
HMGB1-206ENST00000405805 TMEM2Q9UHN6 1383 aa14.1□□□□□ -0.15
HMGB1-206ENST00000405805 QRICH2Q9H0J4 1663 aa14.1□□□□□ -0.15
HMGB1-206ENST00000405805 ARHGAP31Q2M1Z3 1444 aa14.1□□□□□ -0.15
HMGB1-206ENST00000405805 LMTK2Q8IWU2 1503 aa14.1□□□□□ -0.15
HMGB1-206ENST00000405805 CFAP74Q9C0B2 1584 aa14.1□□□□□ -0.15
HMGB1-206ENST00000405805 FAM177A1Q8N128 213 aaPredicted RBP14.1□□□□□ -0.15
HMGB1-206ENST00000405805 KLHDC4Q8TBB5 520 aa14.1□□□□□ -0.15
HMGB1-206ENST00000405805 LRRC59Q96AG4 307 aaKnown RBP14.1□□□□□ -0.15
HMGB1-206ENST00000405805 MROH2AA6NES4 1674 aa14.09□□□□□ -0.15
HMGB1-206ENST00000405805 ZBTB22O15209 634 aa14.09□□□□□ -0.15
HMGB1-206ENST00000405805 ME1P48163 572 aa14.09□□□□□ -0.15
HMGB1-206ENST00000405805 ZDHHC9Q9Y397 364 aa14.09□□□□□ -0.15
HMGB1-206ENST00000405805 PSMA5P28066 241 aa14.09□□□□□ -0.15
HMGB1-206ENST00000405805 CCT2P78371 535 aaKnown RBP14.09□□□□□ -0.15
HMGB1-206ENST00000405805 LUZP1Q86V48 1076 aa14.09□□□□□ -0.15
HMGB1-206ENST00000405805 ATP2B1P20020 1258 aa14.09□□□□□ -0.15
HMGB1-206ENST00000405805 UBE2HP62256 183 aa14.09□□□□□ -0.15
HMGB1-206ENST00000405805 VWDEQ8N2E2 1590 aa14.09□□□□□ -0.15
HMGB1-206ENST00000405805 KIF20AO95235 890 aa14.08□□□□□ -0.15
HMGB1-206ENST00000405805 DDX58O95786 925 aaKnown RBP14.08□□□□□ -0.15
HMGB1-206ENST00000405805 WASHC4Q2M389 1173 aa14.08□□□□□ -0.15
HMGB1-206ENST00000405805 CCDC186Q7Z3E2 898 aa14.08□□□□□ -0.15
HMGB1-206ENST00000405805 DACT1Q9NYF0 836 aa14.08□□□□□ -0.15
HMGB1-206ENST00000405805 MROH1Q8NDA8 1641 aa14.08□□□□□ -0.15
HMGB1-206ENST00000405805 MAP3K2Q9Y2U5 619 aa14.08□□□□□ -0.16
HMGB1-206ENST00000405805 ADGRB1O14514 1584 aa14.08□□□□□ -0.16
HMGB1-206ENST00000405805 FRMPD1Q5SYB0 1578 aa14.08□□□□□ -0.16
HMGB1-206ENST00000405805 BRD1O95696 1058 aa14.08□□□□□ -0.16
HMGB1-206ENST00000405805 ISM2Q6H9L7 571 aa14.08□□□□□ -0.16
HMGB1-206ENST00000405805 HDAC5Q9UQL6 1122 aa14.08□□□□□ -0.16
HMGB1-206ENST00000405805 SMC2O95347 1197 aa14.08□□□□□ -0.16
HMGB1-206ENST00000405805 F13A1P00488 732 aa14.08□□□□□ -0.16
HMGB1-206ENST00000405805 RAPGEF4Q8WZA2 1011 aa14.08□□□□□ -0.16
HMGB1-206ENST00000405805 CPLX1O14810 134 aa14.07□□□□□ -0.16
HMGB1-206ENST00000405805 PDCP20941 246 aa14.07□□□□□ -0.16
HMGB1-206ENST00000405805 PTGS1P23219 599 aa14.07□□□□□ -0.16
HMGB1-206ENST00000405805 RASEFQ8IZ41 740 aa14.07□□□□□ -0.16
HMGB1-206ENST00000405805 POLR3GO15318 223 aaPredicted RBP14.07□□□□□ -0.16
HMGB1-206ENST00000405805 DIP2CQ9Y2E4 1556 aa14.07□□□□□ -0.16
HMGB1-206ENST00000405805 TTC5Q8N0Z6 440 aa14.07□□□□□ -0.16
HMGB1-206ENST00000405805 ECHDC1Q9NTX5 307 aa14.07□□□□□ -0.16
HMGB1-206ENST00000405805 CWC15Q9P013 229 aaKnown RBP14.07□□□□□ -0.16
HMGB1-206ENST00000405805 A2ML1A8K2U0 1454 aa14.06□□□□□ -0.16
HMGB1-206ENST00000405805 KINO60870 393 aaKnown RBP14.06□□□□□ -0.16
HMGB1-206ENST00000405805 RBM8AQ9Y5S9 174 aaKnown RBP14.06□□□□□ -0.16
HMGB1-206ENST00000405805 NRXN1Q9ULB1 1477 aa14.06□□□□□ -0.16
HMGB1-206ENST00000405805 PLEKHO1Q53GL0 409 aaPredicted RBP14.06□□□□□ -0.16
HMGB1-206ENST00000405805 EDC3Q96F86 508 aaKnown RBP14.06□□□□□ -0.16
HMGB1-206ENST00000405805 SNX14Q9Y5W7 946 aa14.06□□□□□ -0.16
HMGB1-206ENST00000405805 BRD2P25440 801 aaKnown RBP14.06□□□□□ -0.16
HMGB1-206ENST00000405805 SLC39A6Q13433 755 aa14.06□□□□□ -0.16
HMGB1-206ENST00000405805 CCDC112Q8NEF3 446 aa14.06□□□□□ -0.16
HMGB1-206ENST00000405805 ATP5J2-PTCD1G3V325 749 aa14.05□□□□□ -0.16
HMGB1-206ENST00000405805 BIN1O00499 593 aa14.05□□□□□ -0.16
HMGB1-206ENST00000405805 PTCD1O75127 700 aaKnown RBP14.05□□□□□ -0.16
HMGB1-206ENST00000405805 ZNF853P0CG23 659 aa14.05□□□□□ -0.16
HMGB1-206ENST00000405805 DEPDC5O75140 1603 aa14.05□□□□□ -0.16
HMGB1-206ENST00000405805 NEXMIFQ5QGS0 1516 aa14.05□□□□□ -0.16
HMGB1-206ENST00000405805 KCNQ3O43525 872 aa14.05□□□□□ -0.16
HMGB1-206ENST00000405805 ANO6Q4KMQ2 910 aa14.05□□□□□ -0.16
HMGB1-206ENST00000405805 ERCC4Q92889 916 aaPredicted RBP14.05□□□□□ -0.16
HMGB1-206ENST00000405805 FAM227BQ96M60 508 aa14.05□□□□□ -0.16
HMGB1-206ENST00000405805 USP44Q9H0E7 712 aa14.05□□□□□ -0.16
HMGB1-206ENST00000405805 DNAJC25Q9H1X3 360 aa14.05□□□□□ -0.16
HMGB1-206ENST00000405805 LGR6Q9HBX8 967 aa14.05□□□□□ -0.16
HMGB1-206ENST00000405805 ZNF165P49910 485 aa14.05□□□□□ -0.16
HMGB1-206ENST00000405805 CHST3Q7LGC8 479 aa14.05□□□□□ -0.16
HMGB1-206ENST00000405805 ATF3P18847 181 aa14.04□□□□□ -0.16
HMGB1-206ENST00000405805 ALKQ9UM73 1620 aa14.04□□□□□ -0.16
HMGB1-206ENST00000405805 SETBP1Q9Y6X0 1596 aa14.04□□□□□ -0.16
HMGB1-206ENST00000405805 NLRP1Q9C000 1473 aa14.04□□□□□ -0.16
HMGB1-206ENST00000405805 TBX22Q9Y458 520 aa14.04□□□□□ -0.16
HMGB1-206ENST00000405805 PTPRMP28827 1452 aa14.04□□□□□ -0.16
HMGB1-206ENST00000405805 PLEKHG3A1L390 1219 aa14.04□□□□□ -0.16
HMGB1-206ENST00000405805 FKBP4Q02790 459 aaKnown RBP eCLIP14.04□□□□□ -0.167e-6■■■■□ 25.4
HMGB1-206ENST00000405805 TTLL5Q6EMB2 1281 aa14.04□□□□□ -0.16
HMGB1-206ENST00000405805 CAMSAP1Q5T5Y3 1602 aa14.03□□□□□ -0.16
HMGB1-206ENST00000405805 HOXC9P31274 260 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms