RNA–Protein interactions for RNA: ENST00000399002.6

SPTLC3-201, Transcript of serine palmitoyltransferase long chain base subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC3, Length 6,169 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC3-201ENST00000399002 CACNA2D4Q7Z3S7 1137 aa9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 DDX54Q8TDD1 881 aaKnown RBP9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 LRRFIP2Q9Y608 721 aaKnown RBP9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 TCOF1Q13428 1488 aaKnown RBP9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 ANKRD62A6NC57 917 aa9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 UQCRFS1P1P0C7P4 283 aa9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 CKAP4Q07065 602 aaKnown RBP9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 TRAF1Q13077 416 aa9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 CALML4Q96GE6 196 aa9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 ARHGEF12Q9NZN5 1544 aa9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 SHANK2Q9UPX8 1470 aa9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 STAMBPO95630 424 aa9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 POLR3DP05423 398 aaPredicted RBP9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 CETN1Q12798 172 aa9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 SMC1AQ14683 1233 aaKnown RBP9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.67□□□□□ -0.86
SPTLC3-201ENST00000399002 CNNM3Q8NE01 707 aa9.66□□□□□ -0.86
SPTLC3-201ENST00000399002 MAP2K1Q02750 393 aaPredicted RBP9.66□□□□□ -0.86
SPTLC3-201ENST00000399002 KLHL40Q2TBA0 621 aa9.66□□□□□ -0.86
SPTLC3-201ENST00000399002 ECHDC1Q9NTX5 307 aa9.66□□□□□ -0.86
SPTLC3-201ENST00000399002 NOS1P29475 1434 aa9.66□□□□□ -0.86
SPTLC3-201ENST00000399002 PLB1Q6P1J6 1458 aa9.66□□□□□ -0.86
SPTLC3-201ENST00000399002 TNPO1Q92973 898 aaKnown RBP9.66□□□□□ -0.86
SPTLC3-201ENST00000399002 DYNC1I1O14576 645 aa9.66□□□□□ -0.86
SPTLC3-201ENST00000399002 ZFYP08048 801 aaPredicted RBP9.66□□□□□ -0.86
SPTLC3-201ENST00000399002 C14orf93Q9H972 538 aaKnown RBP9.66□□□□□ -0.86
SPTLC3-201ENST00000399002 SSBP05455 408 aaKnown RBP eCLIP9.65□□□□□ -0.86
SPTLC3-201ENST00000399002 NUCB1Q02818 461 aa9.65□□□□□ -0.86
SPTLC3-201ENST00000399002 MKNK2Q9HBH9 465 aa9.65□□□□□ -0.86
SPTLC3-201ENST00000399002 FANCAO15360 1455 aa9.65□□□□□ -0.86
SPTLC3-201ENST00000399002 KDM5BQ9UGL1 1544 aa9.65□□□□□ -0.86
SPTLC3-201ENST00000399002 STX6O43752 255 aa9.65□□□□□ -0.86
SPTLC3-201ENST00000399002 FAM193AP78312 1265 aa9.65□□□□□ -0.86
SPTLC3-201ENST00000399002 TAX1BP1Q86VP1 789 aa9.65□□□□□ -0.86
SPTLC3-201ENST00000399002 HOOK3Q86VS8 718 aa9.65□□□□□ -0.86
SPTLC3-201ENST00000399002 SNX21Q969T3 373 aa9.65□□□□□ -0.86
SPTLC3-201ENST00000399002 LDHCP07864 332 aa9.65□□□□□ -0.86
SPTLC3-201ENST00000399002 DZIP1Q86YF9 867 aaKnown RBP9.65□□□□□ -0.86
SPTLC3-201ENST00000399002 ZNF444Q8N0Y2 327 aaPredicted RBP9.65□□□□□ -0.86
SPTLC3-201ENST00000399002 TBC1D32Q96NH3 1257 aa9.65□□□□□ -0.86
SPTLC3-201ENST00000399002 CCDC194A0A1B0GVG4 234 aa9.65□□□□□ -0.86
SPTLC3-201ENST00000399002 ZPR1O75312 459 aa9.65□□□□□ -0.86
SPTLC3-201ENST00000399002 GJB2P29033 226 aa9.65□□□□□ -0.86
SPTLC3-201ENST00000399002 NUP88Q99567 741 aaPredicted RBP9.65□□□□□ -0.86
SPTLC3-201ENST00000399002 TTC12Q9H892 705 aaPredicted RBP9.65□□□□□ -0.86
SPTLC3-201ENST00000399002 EXOC6BQ9Y2D4 811 aa9.65□□□□□ -0.86
SPTLC3-201ENST00000399002 LUZP1Q86V48 1076 aa9.65□□□□□ -0.87
SPTLC3-201ENST00000399002 KRT23Q9C075 422 aa9.65□□□□□ -0.87
SPTLC3-201ENST00000399002 TEX14Q8IWB6 1497 aa9.65□□□□□ -0.87
SPTLC3-201ENST00000399002 CAMK4Q16566 473 aa9.64□□□□□ -0.87
SPTLC3-201ENST00000399002 KIF4BQ2VIQ3 1234 aa9.64□□□□□ -0.87
SPTLC3-201ENST00000399002 TMTC2Q8N394 836 aa9.64□□□□□ -0.87
SPTLC3-201ENST00000399002 NCOA7Q8NI08 942 aa9.64□□□□□ -0.87
SPTLC3-201ENST00000399002 CENPHQ9H3R5 247 aa9.64□□□□□ -0.87
SPTLC3-201ENST00000399002 FAM177A1Q8N128 213 aaPredicted RBP9.64□□□□□ -0.87
SPTLC3-201ENST00000399002 TBC1D2Q9BYX2 928 aa9.64□□□□□ -0.87
SPTLC3-201ENST00000399002 CNNM2Q9H8M5 875 aa9.64□□□□□ -0.87
SPTLC3-201ENST00000399002 PAF1Q8N7H5 531 aa9.64□□□□□ -0.87
SPTLC3-201ENST00000399002 FSIP1Q8NA03 581 aa9.64□□□□□ -0.87
SPTLC3-201ENST00000399002 GIMAP7Q8NHV1 300 aa9.64□□□□□ -0.87
SPTLC3-201ENST00000399002 NLRP5P59047 1200 aa9.64□□□□□ -0.87
SPTLC3-201ENST00000399002 PDE4BQ07343 736 aa9.64□□□□□ -0.87
SPTLC3-201ENST00000399002 LRSAM1Q6UWE0 723 aa9.64□□□□□ -0.87
SPTLC3-201ENST00000399002 ZSCAN29Q8IWY8 852 aaPredicted RBP9.64□□□□□ -0.87
SPTLC3-201ENST00000399002 FEZ1Q99689 392 aa9.64□□□□□ -0.87
SPTLC3-201ENST00000399002 TNNT1P13805 278 aa9.64□□□□□ -0.87
SPTLC3-201ENST00000399002 DYDC1Q8WWB3 177 aa9.64□□□□□ -0.87
SPTLC3-201ENST00000399002 MPHOSPH6Q99547 160 aaKnown RBP9.64□□□□□ -0.87
SPTLC3-201ENST00000399002 CWC25Q9NXE8 425 aaPredicted RBP9.64□□□□□ -0.87
SPTLC3-201ENST00000399002 FLIIQ13045 1269 aa9.63□□□□□ -0.87
SPTLC3-201ENST00000399002 ANKRD24Q8TF21 1146 aa9.63□□□□□ -0.87
SPTLC3-201ENST00000399002 PKNOX2Q96KN3 472 aa9.63□□□□□ -0.87
SPTLC3-201ENST00000399002 CDC5LQ99459 802 aaKnown RBP9.63□□□□□ -0.87
SPTLC3-201ENST00000399002 SRRTQ9BXP5 876 aaKnown RBP9.63□□□□□ -0.87
SPTLC3-201ENST00000399002 TCP11L1Q9NUJ3 509 aa9.63□□□□□ -0.87
SPTLC3-201ENST00000399002 NF2P35240 595 aa9.63□□□□□ -0.87
SPTLC3-201ENST00000399002 MCM10Q7L590 875 aa9.63□□□□□ -0.87
SPTLC3-201ENST00000399002 CRACR2BQ8N4Y2 399 aaPredicted RBP9.63□□□□□ -0.87
SPTLC3-201ENST00000399002 TRIM27P14373 513 aa9.63□□□□□ -0.87
SPTLC3-201ENST00000399002 PRPHP41219 470 aa9.63□□□□□ -0.87
SPTLC3-201ENST00000399002 IFFO1Q0D2I5 559 aa9.63□□□□□ -0.87
SPTLC3-201ENST00000399002 TBC1D9Q6ZT07 1266 aa9.63□□□□□ -0.87
SPTLC3-201ENST00000399002 ZGPATQ8N5A5 531 aaKnown RBP9.63□□□□□ -0.87
SPTLC3-201ENST00000399002 KCNG4Q8TDN1 519 aa9.63□□□□□ -0.87
SPTLC3-201ENST00000399002 BBXQ8WY36 941 aaPredicted RBP9.63□□□□□ -0.87
SPTLC3-201ENST00000399002 PIK3C2GO75747 1445 aa9.63□□□□□ -0.87
SPTLC3-201ENST00000399002 BMS1Q14692 1282 aaKnown RBP9.63□□□□□ -0.87
SPTLC3-201ENST00000399002 NEK1Q96PY6 1258 aa9.63□□□□□ -0.87
SPTLC3-201ENST00000399002 POLR3AO14802 1390 aaPredicted RBP9.63□□□□□ -0.87
SPTLC3-201ENST00000399002 SPAG1Q07617 926 aa9.63□□□□□ -0.87
SPTLC3-201ENST00000399002 UHRF1BP1Q6BDS2 1440 aa9.63□□□□□ -0.87
SPTLC3-201ENST00000399002 IFIT3O14879 490 aaKnown RBP9.62□□□□□ -0.87
SPTLC3-201ENST00000399002 ALDH1L1O75891 902 aa9.62□□□□□ -0.87
SPTLC3-201ENST00000399002 SNW1Q13573 536 aaKnown RBP9.62□□□□□ -0.87
SPTLC3-201ENST00000399002 FERMT1Q9BQL6 677 aa9.62□□□□□ -0.87
SPTLC3-201ENST00000399002 RBM27Q9P2N5 1060 aaKnown RBP9.62□□□□□ -0.87
SPTLC3-201ENST00000399002 INSRP06213 1382 aa9.62□□□□□ -0.87
SPTLC3-201ENST00000399002 BAG3O95817 575 aa9.62□□□□□ -0.87
SPTLC3-201ENST00000399002 ZSCAN22P10073 491 aaPredicted RBP9.62□□□□□ -0.87
SPTLC3-201ENST00000399002 SSFA2P28290 1259 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms