RNA–Protein interactions for RNA: ENST00000396521.3

EXOSC3-202, Transcript of exosome component 3, humanhuman

TSL 2 BASIC

Gene EXOSC3, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-202ENST00000396521 NBPF5PQ86XG9 351 aaPredicted RBP23.4■■□□□ 1.34
EXOSC3-202ENST00000396521 TNS4Q8IZW8 715 aa23.4■■□□□ 1.34
EXOSC3-202ENST00000396521 PHACTR3Q96KR7 559 aa23.4■■□□□ 1.34
EXOSC3-202ENST00000396521 RSPH6AQ9H0K4 717 aa23.4■■□□□ 1.34
EXOSC3-202ENST00000396521 ZNF219Q9P2Y4 722 aaPredicted RBP23.4■■□□□ 1.34
EXOSC3-202ENST00000396521 VIRMAQ69YN4 1812 aaKnown RBP23.4■■□□□ 1.34
EXOSC3-202ENST00000396521 TPTE2Q6XPS3 522 aa23.39■■□□□ 1.33
EXOSC3-202ENST00000396521 CREBZFQ9NS37 354 aa23.39■■□□□ 1.33
EXOSC3-202ENST00000396521 SCN7AQ01118 1682 aa23.38■■□□□ 1.33
EXOSC3-202ENST00000396521 NPR1P16066 1061 aa23.38■■□□□ 1.33
EXOSC3-202ENST00000396521 CCDC24Q8N4L8 307 aa23.38■■□□□ 1.33
EXOSC3-202ENST00000396521 USP16Q9Y5T5 823 aa23.38■■□□□ 1.33
EXOSC3-202ENST00000396521 KLRG2A4D1S0 409 aaPredicted RBP23.37■■□□□ 1.33
EXOSC3-202ENST00000396521 CCDC93Q567U6 631 aa23.37■■□□□ 1.33
EXOSC3-202ENST00000396521 KCNQ3O43525 872 aa23.36■■□□□ 1.33
EXOSC3-202ENST00000396521 HSPA1AP0DMV8 641 aaKnown RBP23.36■■□□□ 1.33
EXOSC3-202ENST00000396521 HSPA1BP0DMV9 641 aaKnown RBP23.36■■□□□ 1.33
EXOSC3-202ENST00000396521 TIAM2Q8IVF5 1701 aa23.36■■□□□ 1.33
EXOSC3-202ENST00000396521 RTKN2Q8IZC4 609 aa23.35■■□□□ 1.33
EXOSC3-202ENST00000396521 C7orf43Q8WVR3 580 aa23.35■■□□□ 1.33
EXOSC3-202ENST00000396521 L3MBTL3Q96JM7 780 aaPredicted RBP23.35■■□□□ 1.33
EXOSC3-202ENST00000396521 DDNO94850 711 aaPredicted RBP23.34■■□□□ 1.33
EXOSC3-202ENST00000396521 U2AF1L5P0DN76 240 aaPredicted RBP23.34■■□□□ 1.33
EXOSC3-202ENST00000396521 U2AF1Q01081 240 aaKnown RBP eCLIP23.34■■□□□ 1.33
EXOSC3-202ENST00000396521 LDHDQ86WU2 507 aa23.34■■□□□ 1.33
EXOSC3-202ENST00000396521 SIPA1L3O60292 1781 aaPredicted RBP23.34■■□□□ 1.33
EXOSC3-202ENST00000396521 ANKRD31Q8N7Z5 1873 aa23.34■■□□□ 1.33
EXOSC3-202ENST00000396521 FER1L6Q2WGJ9 1857 aa23.33■■□□□ 1.33
EXOSC3-202ENST00000396521 ALDH1B1P30837 517 aa23.33■■□□□ 1.33
EXOSC3-202ENST00000396521 CNGB1Q14028 1251 aaPredicted RBP23.33■■□□□ 1.33
EXOSC3-202ENST00000396521 FKBP4Q02790 459 aaKnown RBP eCLIP23.32■■□□□ 1.32
EXOSC3-202ENST00000396521 NIP7Q9Y221 180 aaKnown RBP eCLIP23.32■■□□□ 1.32
EXOSC3-202ENST00000396521 TAF7Q15545 349 aaPredicted RBP23.31■■□□□ 1.32
EXOSC3-202ENST00000396521 CCDC88AQ3V6T2 1871 aa23.3■■□□□ 1.32
EXOSC3-202ENST00000396521 DICER1Q9UPY3 1922 aaKnown RBP23.3■■□□□ 1.32
EXOSC3-202ENST00000396521 NEFMP07197 916 aa23.29■■□□□ 1.32
EXOSC3-202ENST00000396521 MCM10Q7L590 875 aa23.29■■□□□ 1.32
EXOSC3-202ENST00000396521 TAF1DQ9H5J8 278 aaPredicted RBP23.29■■□□□ 1.32
EXOSC3-202ENST00000396521 COL11A2P13942 1736 aaPredicted RBP23.28■■□□□ 1.32
EXOSC3-202ENST00000396521 GTF2E1P29083 439 aaPredicted RBP23.28■■□□□ 1.32
EXOSC3-202ENST00000396521 GRIPAP1Q4V328 841 aa23.28■■□□□ 1.32
EXOSC3-202ENST00000396521 CC2D2BQ6DHV5 1058 aa23.28■■□□□ 1.32
EXOSC3-202ENST00000396521 PNISRQ8TF01 805 aaKnown RBP23.28■■□□□ 1.32
EXOSC3-202ENST00000396521 NYXQ9GZU5 481 aa23.28■■□□□ 1.32
EXOSC3-202ENST00000396521 NBPF26B4DH59 902 aa23.27■■□□□ 1.32
EXOSC3-202ENST00000396521 PPP2R1AP30153 589 aa23.27■■□□□ 1.32
EXOSC3-202ENST00000396521 PIP4K2AP48426 406 aaPredicted RBP23.27■■□□□ 1.32
EXOSC3-202ENST00000396521 NBPF10Q6P3W6 841 aaKnown RBP23.27■■□□□ 1.32
EXOSC3-202ENST00000396521 PNMA8AQ86V59 439 aaPredicted RBP23.27■■□□□ 1.32
EXOSC3-202ENST00000396521 NBPF15Q8N660 670 aa23.27■■□□□ 1.32
EXOSC3-202ENST00000396521 HACL1Q9UJ83 578 aa23.27■■□□□ 1.32
EXOSC3-202ENST00000396521 PASKQ96RG2 1323 aa23.27■■□□□ 1.32
EXOSC3-202ENST00000396521 SLX4Q8IY92 1834 aa23.26■■□□□ 1.31
EXOSC3-202ENST00000396521 PRAMEF22A3QJZ6 481 aa23.26■■□□□ 1.31
EXOSC3-202ENST00000396521 ERVV-1B6SEH8 477 aa23.26■■□□□ 1.31
EXOSC3-202ENST00000396521 BCORQ6W2J9 1755 aa23.25■■□□□ 1.31
EXOSC3-202ENST00000396521 MKRN1Q9UHC7 482 aaKnown RBP23.25■■□□□ 1.31
EXOSC3-202ENST00000396521 POTEIP0CG38 1075 aa23.24■■□□□ 1.31
EXOSC3-202ENST00000396521 POTEJP0CG39 1038 aa23.24■■□□□ 1.31
EXOSC3-202ENST00000396521 PSMD1Q99460 953 aa23.24■■□□□ 1.31
EXOSC3-202ENST00000396521 ZNF277Q9NRM2 450 aaPredicted RBP23.24■■□□□ 1.31
EXOSC3-202ENST00000396521 CNTNAP1P78357 1384 aa23.24■■□□□ 1.31
EXOSC3-202ENST00000396521 TMEM88BA6NKF7 163 aa23.23■■□□□ 1.31
EXOSC3-202ENST00000396521 CAPN15O75808 1086 aa23.23■■□□□ 1.31
EXOSC3-202ENST00000396521 IARSP41252 1262 aaKnown RBP23.23■■□□□ 1.31
EXOSC3-202ENST00000396521 JDP2Q8WYK2 163 aa23.23■■□□□ 1.31
EXOSC3-202ENST00000396521 ARFGEF2Q9Y6D5 1785 aa23.22■■□□□ 1.31
EXOSC3-202ENST00000396521 FZD9O00144 591 aa23.22■■□□□ 1.31
EXOSC3-202ENST00000396521 ITGBL1O95965 494 aaPredicted RBP23.22■■□□□ 1.31
EXOSC3-202ENST00000396521 CRY2Q49AN0 593 aa23.22■■□□□ 1.31
EXOSC3-202ENST00000396521 GPC2Q8N158 579 aa23.22■■□□□ 1.31
EXOSC3-202ENST00000396521 EPHX2P34913 555 aa23.21■■□□□ 1.31
EXOSC3-202ENST00000396521 DCTN1Q14203 1278 aa23.21■■□□□ 1.31
EXOSC3-202ENST00000396521 SYNE4Q8N205 404 aa23.21■■□□□ 1.31
EXOSC3-202ENST00000396521 PRDM10Q9NQV6 1147 aa23.21■■□□□ 1.31
EXOSC3-202ENST00000396521 SCN4AP35499 1836 aa23.21■■□□□ 1.31
EXOSC3-202ENST00000396521 HLFQ16534 295 aa23.2■■□□□ 1.3
EXOSC3-202ENST00000396521 EAPPQ56P03 285 aaPredicted RBP23.2■■□□□ 1.3
EXOSC3-202ENST00000396521 AIDAQ96BJ3 306 aa23.2■■□□□ 1.3
EXOSC3-202ENST00000396521 PNNQ9H307 717 aaKnown RBP23.2■■□□□ 1.3
EXOSC3-202ENST00000396521 KIF6Q6ZMV9 814 aa23.19■■□□□ 1.3
EXOSC3-202ENST00000396521 CLEC11AQ9Y240 323 aa23.19■■□□□ 1.3
EXOSC3-202ENST00000396521 IBTKQ9P2D0 1353 aaPredicted RBP23.18■■□□□ 1.3
EXOSC3-202ENST00000396521 MAP3K15Q6ZN16 1313 aa23.18■■□□□ 1.3
EXOSC3-202ENST00000396521 ZNF541Q9H0D2 1346 aa23.18■■□□□ 1.3
EXOSC3-202ENST00000396521 FAM177BA6PVY3 158 aa23.18■■□□□ 1.3
EXOSC3-202ENST00000396521 HOXA10P31260 410 aaPredicted RBP23.18■■□□□ 1.3
EXOSC3-202ENST00000396521 CTCFP49711 727 aaPredicted RBP23.17■■□□□ 1.3
EXOSC3-202ENST00000396521 EIF6P56537 245 aaKnown RBP23.17■■□□□ 1.3
EXOSC3-202ENST00000396521 CNTROBQ8N137 903 aa23.17■■□□□ 1.3
EXOSC3-202ENST00000396521 RPGRQ92834 1020 aaKnown RBP23.17■■□□□ 1.3
EXOSC3-202ENST00000396521 ERBB4Q15303 1308 aa23.16■■□□□ 1.3
EXOSC3-202ENST00000396521 RIC1Q4ADV7 1423 aa23.16■■□□□ 1.3
EXOSC3-202ENST00000396521 CRAMP1Q96RY5 1269 aa23.15■■□□□ 1.3
EXOSC3-202ENST00000396521 TMX4Q9H1E5 349 aaPredicted RBP23.15■■□□□ 1.3
EXOSC3-202ENST00000396521 MIS18AQ9NYP9 233 aa23.15■■□□□ 1.3
EXOSC3-202ENST00000396521 RASSF10A6NK89 507 aa23.14■■□□□ 1.29
EXOSC3-202ENST00000396521 LMOD1P29536 600 aaPredicted RBP23.14■■□□□ 1.29
EXOSC3-202ENST00000396521 VEGFBP49765 207 aa23.14■■□□□ 1.29
EXOSC3-202ENST00000396521 EIF4A1P60842 406 aaKnown RBP23.14■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 107.3 ms