RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 IQCA1Q86XH1 822 aa14.33□□□□□ -0.12
CHD3-203ENST00000380358 PFDN4Q9NQP4 134 aa14.33□□□□□ -0.12
CHD3-203ENST00000380358 MCM2P49736 904 aa14.33□□□□□ -0.12
CHD3-203ENST00000380358 RASA3Q14644 834 aa14.32□□□□□ -0.12
CHD3-203ENST00000380358 GSTA5Q7RTV2 222 aa14.32□□□□□ -0.12
CHD3-203ENST00000380358 CLSTN2Q9H4D0 955 aa14.32□□□□□ -0.12
CHD3-203ENST00000380358 ZNF213O14771 459 aa14.32□□□□□ -0.12
CHD3-203ENST00000380358 RFC4P35249 363 aa14.32□□□□□ -0.12
CHD3-203ENST00000380358 FBF1Q8TES7 1133 aa14.32□□□□□ -0.12
CHD3-203ENST00000380358 C8orf76Q96K31 380 aa14.32□□□□□ -0.12
CHD3-203ENST00000380358 GOLGA8AA7E2F4 631 aa14.32□□□□□ -0.12
CHD3-203ENST00000380358 GOLGA8BA8MQT2 603 aa14.32□□□□□ -0.12
CHD3-203ENST00000380358 FERMT1Q9BQL6 677 aa14.32□□□□□ -0.12
CHD3-203ENST00000380358 JAG2Q9Y219 1238 aa14.32□□□□□ -0.12
CHD3-203ENST00000380358 ZNF644Q9H582 1327 aaPredicted RBP14.32□□□□□ -0.12
CHD3-203ENST00000380358 PAFAH1B1P43034 410 aa14.32□□□□□ -0.12
CHD3-203ENST00000380358 NOP9Q86U38 636 aaKnown RBP14.32□□□□□ -0.12
CHD3-203ENST00000380358 PKD2L1Q9P0L9 805 aa14.32□□□□□ -0.12
CHD3-203ENST00000380358 IFIT5Q13325 482 aaKnown RBP14.32□□□□□ -0.12
CHD3-203ENST00000380358 CALM1P0DP23 149 aa14.31□□□□□ -0.12
CHD3-203ENST00000380358 CALM2P0DP24 149 aa14.31□□□□□ -0.12
CHD3-203ENST00000380358 CALM3P0DP25 149 aa14.31□□□□□ -0.12
CHD3-203ENST00000380358 MAP3K11Q16584 847 aa14.31□□□□□ -0.12
CHD3-203ENST00000380358 PPP1R12AO14974 1030 aaPredicted RBP14.31□□□□□ -0.12
CHD3-203ENST00000380358 CALML4Q96GE6 196 aa14.31□□□□□ -0.12
CHD3-203ENST00000380358 SLC5A1P13866 664 aa14.31□□□□□ -0.12
CHD3-203ENST00000380358 PPP2R5DQ14738 602 aa14.31□□□□□ -0.12
CHD3-203ENST00000380358 CFAP57Q96MR6 1250 aa14.31□□□□□ -0.12
CHD3-203ENST00000380358 CETN1Q12798 172 aa14.31□□□□□ -0.12
CHD3-203ENST00000380358 CCDC6Q16204 474 aa14.31□□□□□ -0.12
CHD3-203ENST00000380358 ATP5J2-PTCD1G3V325 749 aa14.3□□□□□ -0.12
CHD3-203ENST00000380358 CATIPQ7Z7H3 387 aa14.3□□□□□ -0.12
CHD3-203ENST00000380358 MAP3K12Q12852 859 aa14.3□□□□□ -0.12
CHD3-203ENST00000380358 CTR9Q6PD62 1173 aa14.3□□□□□ -0.12
CHD3-203ENST00000380358 CCDC50Q8IVM0 306 aa14.3□□□□□ -0.12
CHD3-203ENST00000380358 TFIP11Q9UBB9 837 aaKnown RBP14.3□□□□□ -0.12
CHD3-203ENST00000380358 STX8Q9UNK0 236 aa14.3□□□□□ -0.12
CHD3-203ENST00000380358 STX6O43752 255 aa14.3□□□□□ -0.12
CHD3-203ENST00000380358 HARSP12081 509 aaKnown RBP14.3□□□□□ -0.12
CHD3-203ENST00000380358 SMC1BQ8NDV3 1235 aa14.3□□□□□ -0.12
CHD3-203ENST00000380358 USO1O60763 962 aaKnown RBP14.3□□□□□ -0.12
CHD3-203ENST00000380358 PTPN14Q15678 1187 aa14.3□□□□□ -0.12
CHD3-203ENST00000380358 RAB34Q9BZG1 259 aa14.3□□□□□ -0.12
CHD3-203ENST00000380358 TAOK3Q9H2K8 898 aa14.3□□□□□ -0.12
CHD3-203ENST00000380358 CCDC65Q8IXS2 484 aa14.3□□□□□ -0.12
CHD3-203ENST00000380358 GDPD2Q9HCC8 539 aa14.3□□□□□ -0.12
CHD3-203ENST00000380358 PTGS1P23219 599 aa14.3□□□□□ -0.12
CHD3-203ENST00000380358 GEN1Q17RS7 908 aa14.3□□□□□ -0.12
CHD3-203ENST00000380358 PTPRGP23470 1445 aa14.29□□□□□ -0.12
CHD3-203ENST00000380358 ERCC5P28715 1186 aaPredicted RBP14.29□□□□□ -0.12
CHD3-203ENST00000380358 MRRFQ96E11 262 aaKnown RBP14.29□□□□□ -0.12
CHD3-203ENST00000380358 GINS2Q9Y248 185 aa14.29□□□□□ -0.12
CHD3-203ENST00000380358 KRT13P13646 458 aa14.29□□□□□ -0.12
CHD3-203ENST00000380358 KAT14Q9H8E8 782 aa14.29□□□□□ -0.12
CHD3-203ENST00000380358 GRPEL1Q9HAV7 217 aa14.29□□□□□ -0.12
CHD3-203ENST00000380358 MICU3Q86XE3 530 aa14.29□□□□□ -0.12
CHD3-203ENST00000380358 CHD1LQ86WJ1 897 aa14.29□□□□□ -0.12
CHD3-203ENST00000380358 IQCGQ9H095 443 aaKnown RBP14.29□□□□□ -0.12
CHD3-203ENST00000380358 SFPQP23246 707 aaKnown RBP eCLIP14.29□□□□□ -0.12
CHD3-203ENST00000380358 GJA3Q9Y6H8 435 aa14.29□□□□□ -0.12
CHD3-203ENST00000380358 U3KPZ7 1027 aaPredicted RBP14.29□□□□□ -0.12
CHD3-203ENST00000380358 SLU7O95391 586 aaKnown RBP14.29□□□□□ -0.12
CHD3-203ENST00000380358 AFMP43652 599 aa14.29□□□□□ -0.12
CHD3-203ENST00000380358 SATB1Q01826 763 aa14.29□□□□□ -0.12
CHD3-203ENST00000380358 PLCB3Q01970 1234 aa14.29□□□□□ -0.12
CHD3-203ENST00000380358 MAP7D1Q3KQU3 841 aa14.29□□□□□ -0.12
CHD3-203ENST00000380358 WAPLQ7Z5K2 1190 aa14.29□□□□□ -0.12
CHD3-203ENST00000380358 ALS2CR12Q96Q35 445 aa14.29□□□□□ -0.12
CHD3-203ENST00000380358 F6X3S4 739 aa14.28□□□□□ -0.12
CHD3-203ENST00000380358 RIMBP2O15034 1052 aa14.28□□□□□ -0.12
CHD3-203ENST00000380358 GCC1Q96CN9 775 aa14.28□□□□□ -0.12
CHD3-203ENST00000380358 TMC6Q7Z403 805 aa14.28□□□□□ -0.12
CHD3-203ENST00000380358 PDCL2Q8N4E4 241 aa14.28□□□□□ -0.12
CHD3-203ENST00000380358 GTF2F1P35269 517 aaKnown RBP eCLIP14.28□□□□□ -0.123e-8■■■□□ 16.5
CHD3-203ENST00000380358 PRKG1Q13976 671 aa14.28□□□□□ -0.12
CHD3-203ENST00000380358 C16orf45Q96MC5 204 aaPredicted RBP14.27□□□□□ -0.12
CHD3-203ENST00000380358 NAP1L3Q99457 506 aaPredicted RBP14.27□□□□□ -0.12
CHD3-203ENST00000380358 SLC26A6Q9BXS9 759 aa14.27□□□□□ -0.12
CHD3-203ENST00000380358 NAA25Q14CX7 972 aa14.27□□□□□ -0.12
CHD3-203ENST00000380358 CLIP2Q9UDT6 1046 aa14.27□□□□□ -0.12
CHD3-203ENST00000380358 AKAP2Q9Y2D5 859 aa14.27□□□□□ -0.12
CHD3-203ENST00000380358 FGFR1OPO95684 399 aaKnown RBP14.27□□□□□ -0.13
CHD3-203ENST00000380358 SPOUT1Q5T280 376 aaKnown RBP14.27□□□□□ -0.13
CHD3-203ENST00000380358 GABPAQ06546 454 aa14.27□□□□□ -0.13
CHD3-203ENST00000380358 DDX46Q7L014 1031 aaKnown RBP14.27□□□□□ -0.13
CHD3-203ENST00000380358 GOLIM4O00461 696 aa14.27□□□□□ -0.13
CHD3-203ENST00000380358 TMEM67Q5HYA8 995 aa14.27□□□□□ -0.13
CHD3-203ENST00000380358 PDS5BQ9NTI5 1447 aa14.26□□□□□ -0.13
CHD3-203ENST00000380358 SNX16P57768 344 aa14.26□□□□□ -0.13
CHD3-203ENST00000380358 HEATR3Q7Z4Q2 680 aa14.26□□□□□ -0.13
CHD3-203ENST00000380358 UIMC1Q96RL1 719 aa14.26□□□□□ -0.13
CHD3-203ENST00000380358 A0A087WZG4 1122 aa14.26□□□□□ -0.13
CHD3-203ENST00000380358 GNAT3A8MTJ3 354 aa14.26□□□□□ -0.13
CHD3-203ENST00000380358 TBCAO75347 108 aaKnown RBP14.26□□□□□ -0.13
CHD3-203ENST00000380358 YEATS4O95619 227 aa14.26□□□□□ -0.13
CHD3-203ENST00000380358 ANKLE2Q86XL3 938 aa14.26□□□□□ -0.13
CHD3-203ENST00000380358 TSHZ3Q63HK5 1081 aa14.26□□□□□ -0.13
CHD3-203ENST00000380358 SMARCA2P51531 1590 aa14.26□□□□□ -0.13
CHD3-203ENST00000380358 FAM160A1Q05DH4 1040 aa14.26□□□□□ -0.13
CHD3-203ENST00000380358 MAP9Q49MG5 647 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms