RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 RAB11FIP3O75154 756 aa26.46■■□□□ 1.83
TRIM54-202ENST00000380075 RABEP1Q15276 862 aa26.46■■□□□ 1.83
TRIM54-202ENST00000380075 USP26Q9BXU7 913 aa26.46■■□□□ 1.83
TRIM54-202ENST00000380075 AOX1Q06278 1338 aa26.46■■□□□ 1.83
TRIM54-202ENST00000380075 GIGYF1O75420 1035 aaPredicted RBP26.46■■□□□ 1.83
TRIM54-202ENST00000380075 DDIT3P35638 169 aa26.46■■□□□ 1.83
TRIM54-202ENST00000380075 BEND3Q5T5X7 828 aa26.46■■□□□ 1.83
TRIM54-202ENST00000380075 K7ELQ4 463 aaPredicted RBP26.44■■□□□ 1.82
TRIM54-202ENST00000380075 POLA2Q14181 598 aa26.44■■□□□ 1.82
TRIM54-202ENST00000380075 STAP2Q9UGK3 403 aa26.44■■□□□ 1.82
TRIM54-202ENST00000380075 ERVV-2B6SEH9 535 aa26.44■■□□□ 1.82
TRIM54-202ENST00000380075 MX1P20591 662 aa26.44■■□□□ 1.82
TRIM54-202ENST00000380075 SPRYD3Q8NCJ5 442 aa26.44■■□□□ 1.82
TRIM54-202ENST00000380075 BCL11BQ9C0K0 894 aaPredicted RBP26.44■■□□□ 1.82
TRIM54-202ENST00000380075 HDAC5Q9UQL6 1122 aa26.44■■□□□ 1.82
TRIM54-202ENST00000380075 TOGARAM1Q9Y4F4 1720 aa26.43■■□□□ 1.82
TRIM54-202ENST00000380075 PI4KAP2A4QPH2 592 aa26.43■■□□□ 1.82
TRIM54-202ENST00000380075 PI4KAP1Q8N8J0 262 aa26.43■■□□□ 1.82
TRIM54-202ENST00000380075 NFATC2IPQ8NCF5 419 aa26.42■■□□□ 1.82
TRIM54-202ENST00000380075 BCL11AQ9H165 835 aa26.42■■□□□ 1.82
TRIM54-202ENST00000380075 DOT1LQ8TEK3 1739 aa26.42■■□□□ 1.82
TRIM54-202ENST00000380075 ADCY9O60503 1353 aa26.42■■□□□ 1.82
TRIM54-202ENST00000380075 ERC2O15083 957 aa26.42■■□□□ 1.82
TRIM54-202ENST00000380075 ALDH1L1O75891 902 aa26.42■■□□□ 1.82
TRIM54-202ENST00000380075 CABP4P57796 275 aa26.42■■□□□ 1.82
TRIM54-202ENST00000380075 PIGBQ92521 554 aa26.42■■□□□ 1.82
TRIM54-202ENST00000380075 HYPKQ9NX55 129 aa26.41■■□□□ 1.82
TRIM54-202ENST00000380075 TMOD3Q9NYL9 352 aa26.41■■□□□ 1.82
TRIM54-202ENST00000380075 KAT6BQ8WYB5 2073 aa26.4■■□□□ 1.82
TRIM54-202ENST00000380075 UPF1Q92900 1129 aaKnown RBP eCLIP26.4■■□□□ 1.82
TRIM54-202ENST00000380075 SLC52A2Q9HAB3 445 aa26.4■■□□□ 1.82
TRIM54-202ENST00000380075 SBF2Q86WG5 1849 aa26.39■■□□□ 1.82
TRIM54-202ENST00000380075 HSP90AB4PQ58FF6 505 aa26.39■■□□□ 1.82
TRIM54-202ENST00000380075 PPP1R42Q7Z4L9 355 aa26.39■■□□□ 1.82
TRIM54-202ENST00000380075 MCM4P33991 863 aa26.38■■□□□ 1.81
TRIM54-202ENST00000380075 TUBGCP6Q96RT7 1819 aa26.38■■□□□ 1.81
TRIM54-202ENST00000380075 KSR2Q6VAB6 950 aa26.38■■□□□ 1.81
TRIM54-202ENST00000380075 NHSQ6T4R5 1651 aa26.37■■□□□ 1.81
TRIM54-202ENST00000380075 SCN11AQ9UI33 1791 aa26.37■■□□□ 1.81
TRIM54-202ENST00000380075 APBA3O96018 575 aa26.37■■□□□ 1.81
TRIM54-202ENST00000380075 MTX1Q13505 466 aa26.37■■□□□ 1.81
TRIM54-202ENST00000380075 KIF1BPQ96EK5 621 aa26.36■■□□□ 1.81
TRIM54-202ENST00000380075 DDX21Q9NR30 783 aaKnown RBP eCLIP26.36■■□□□ 1.81
TRIM54-202ENST00000380075 DDX58O95786 925 aaKnown RBP26.35■■□□□ 1.81
TRIM54-202ENST00000380075 HSP90AA1P07900 732 aaKnown RBP26.35■■□□□ 1.81
TRIM54-202ENST00000380075 SRGAP3O43295 1099 aa26.35■■□□□ 1.81
TRIM54-202ENST00000380075 NBPF7P0C2Y1 421 aaPredicted RBP26.35■■□□□ 1.81
TRIM54-202ENST00000380075 SURF6O75683 361 aaKnown RBP26.34■■□□□ 1.81
TRIM54-202ENST00000380075 CD2BP2O95400 341 aaKnown RBP26.34■■□□□ 1.81
TRIM54-202ENST00000380075 SF3B2Q13435 895 aaKnown RBP26.34■■□□□ 1.81
TRIM54-202ENST00000380075 CCDC125Q86Z20 511 aa26.34■■□□□ 1.81
TRIM54-202ENST00000380075 RBM42Q9BTD8 480 aaKnown RBP26.34■■□□□ 1.81
TRIM54-202ENST00000380075 ASAP1Q9ULH1 1129 aa26.34■■□□□ 1.81
TRIM54-202ENST00000380075 MRC1P22897 1456 aa26.33■■□□□ 1.81
TRIM54-202ENST00000380075 ZNF790Q6PG37 636 aa26.33■■□□□ 1.81
TRIM54-202ENST00000380075 MAP3K2Q9Y2U5 619 aa26.33■■□□□ 1.81
TRIM54-202ENST00000380075 ITGB4P16144 1822 aa26.33■■□□□ 1.81
TRIM54-202ENST00000380075 DDX11L8A8MPP1 907 aa26.33■■□□□ 1.8
TRIM54-202ENST00000380075 ANXA1P04083 346 aa26.33■■□□□ 1.8
TRIM54-202ENST00000380075 RHPN1Q8TCX5 695 aa26.33■■□□□ 1.8
TRIM54-202ENST00000380075 EPB41L2O43491 1005 aaKnown RBP26.32■■□□□ 1.8
TRIM54-202ENST00000380075 ATG3Q9NT62 314 aa26.31■■□□□ 1.8
TRIM54-202ENST00000380075 ST18O60284 1047 aa26.31■■□□□ 1.8
TRIM54-202ENST00000380075 SLC39A6Q13433 755 aa26.31■■□□□ 1.8
TRIM54-202ENST00000380075 DEFB132Q7Z7B7 95 aa26.31■■□□□ 1.8
TRIM54-202ENST00000380075 LINS1Q8NG48 757 aa26.31■■□□□ 1.8
TRIM54-202ENST00000380075 ESYT1Q9BSJ8 1104 aa26.31■■□□□ 1.8
TRIM54-202ENST00000380075 RAB3GAP1Q15042 981 aa26.3■■□□□ 1.8
TRIM54-202ENST00000380075 PROSER3Q2NL68 480 aa26.29■■□□□ 1.8
TRIM54-202ENST00000380075 C9orf78Q9NZ63 289 aaPredicted RBP26.29■■□□□ 1.8
TRIM54-202ENST00000380075 TNS1Q9HBL0 1735 aaKnown RBP26.29■■□□□ 1.8
TRIM54-202ENST00000380075 BTAF1O14981 1849 aa26.29■■□□□ 1.8
TRIM54-202ENST00000380075 EN1Q05925 392 aaPredicted RBP26.29■■□□□ 1.8
TRIM54-202ENST00000380075 IL27Q8NEV9 243 aa26.29■■□□□ 1.8
TRIM54-202ENST00000380075 UTYO14607 1347 aa26.28■■□□□ 1.8
TRIM54-202ENST00000380075 PTMSP20962 102 aa26.28■■□□□ 1.8
TRIM54-202ENST00000380075 CHMLP26374 656 aa26.28■■□□□ 1.8
TRIM54-202ENST00000380075 GBP4Q96PP9 640 aa26.28■■□□□ 1.8
TRIM54-202ENST00000380075 TRIM6-TRIM34B2RNG4 842 aa26.27■■□□□ 1.8
TRIM54-202ENST00000380075 PLSCR1O15162 318 aa26.27■■□□□ 1.8
TRIM54-202ENST00000380075 MCCP23508 829 aa26.27■■□□□ 1.8
TRIM54-202ENST00000380075 TSHZ3Q63HK5 1081 aa26.27■■□□□ 1.8
TRIM54-202ENST00000380075 IL1RAPL2Q9NP60 686 aa26.27■■□□□ 1.8
TRIM54-202ENST00000380075 BAG6P46379 1132 aa26.26■■□□□ 1.79
TRIM54-202ENST00000380075 PDIA6Q15084 440 aa26.26■■□□□ 1.79
TRIM54-202ENST00000380075 PALLDQ8WX93 1383 aa26.26■■□□□ 1.79
TRIM54-202ENST00000380075 USP42Q9H9J4 1324 aaKnown RBP26.26■■□□□ 1.79
TRIM54-202ENST00000380075 PRAMEF22A3QJZ6 481 aa26.26■■□□□ 1.79
TRIM54-202ENST00000380075 ANAPC15P60006 121 aa26.26■■□□□ 1.79
TRIM54-202ENST00000380075 ERC1Q8IUD2 1116 aa26.26■■□□□ 1.79
TRIM54-202ENST00000380075 RILPL2Q969X0 211 aa26.26■■□□□ 1.79
TRIM54-202ENST00000380075 SMARCC1Q92922 1105 aaPredicted RBP26.25■■□□□ 1.79
TRIM54-202ENST00000380075 EZH2Q15910 746 aaKnown RBP26.24■■□□□ 1.79
TRIM54-202ENST00000380075 PROM2Q8N271 834 aa26.24■■□□□ 1.79
TRIM54-202ENST00000380075 CAMKK2Q96RR4 588 aa26.24■■□□□ 1.79
TRIM54-202ENST00000380075 TTC41PQ6P2S7 1318 aa26.24■■□□□ 1.79
TRIM54-202ENST00000380075 PTCD1O75127 700 aaKnown RBP26.24■■□□□ 1.79
TRIM54-202ENST00000380075 TNPO1Q92973 898 aaKnown RBP26.24■■□□□ 1.79
TRIM54-202ENST00000380075 IL17RAQ96F46 866 aa26.24■■□□□ 1.79
TRIM54-202ENST00000380075 GRM8O00222 908 aa26.23■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms