RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 DIAPH3Q9NSV4 1193 aa30.51■■■□□ 2.47
C9orf40-201ENST00000376854 ALDH1L1O75891 902 aa30.5■■■□□ 2.47
C9orf40-201ENST00000376854 RPAP1Q9BWH6 1393 aaPredicted RBP30.5■■■□□ 2.47
C9orf40-201ENST00000376854 KRT28Q7Z3Y7 464 aa30.5■■■□□ 2.47
C9orf40-201ENST00000376854 USP48Q86UV5 1035 aa30.49■■■□□ 2.47
C9orf40-201ENST00000376854 PROSER2Q86WR7 435 aaPredicted RBP30.49■■■□□ 2.47
C9orf40-201ENST00000376854 LIMCH1Q9UPQ0 1083 aa30.49■■■□□ 2.47
C9orf40-201ENST00000376854 GIGYF1O75420 1035 aaPredicted RBP30.48■■■□□ 2.47
C9orf40-201ENST00000376854 PROSER3Q2NL68 480 aa30.48■■■□□ 2.47
C9orf40-201ENST00000376854 NCAPD2Q15021 1401 aa30.48■■■□□ 2.47
C9orf40-201ENST00000376854 GADD45BO75293 160 aaPredicted RBP30.48■■■□□ 2.47
C9orf40-201ENST00000376854 KSR2Q6VAB6 950 aa30.48■■■□□ 2.47
C9orf40-201ENST00000376854 RUFY3Q7L099 469 aa30.48■■■□□ 2.47
C9orf40-201ENST00000376854 RUFY2Q8WXA3 655 aa30.48■■■□□ 2.47
C9orf40-201ENST00000376854 ECHDC1Q9NTX5 307 aa30.47■■■□□ 2.47
C9orf40-201ENST00000376854 NOL7Q9UMY1 257 aaKnown RBP30.47■■■□□ 2.47
C9orf40-201ENST00000376854 CRYBG1Q9Y4K1 1723 aa30.47■■■□□ 2.47
C9orf40-201ENST00000376854 RNF214Q8ND24 703 aa30.47■■■□□ 2.47
C9orf40-201ENST00000376854 TSPY26PQ9H489 355 aa30.47■■■□□ 2.47
C9orf40-201ENST00000376854 PRAMEF22A3QJZ6 481 aa30.46■■■□□ 2.47
C9orf40-201ENST00000376854 GPATCH3Q96I76 525 aa30.46■■■□□ 2.47
C9orf40-201ENST00000376854 LARP6Q9BRS8 491 aaKnown RBP30.46■■■□□ 2.47
C9orf40-201ENST00000376854 PA2G4Q9UQ80 394 aaKnown RBP30.46■■■□□ 2.47
C9orf40-201ENST00000376854 HDAC5Q9UQL6 1122 aa30.46■■■□□ 2.47
C9orf40-201ENST00000376854 ZSCAN21Q9Y5A6 473 aaPredicted RBP30.46■■■□□ 2.47
C9orf40-201ENST00000376854 TRPM3Q9HCF6 1732 aaPredicted RBP30.46■■■□□ 2.47
C9orf40-201ENST00000376854 IFIT2P09913 472 aaKnown RBP30.45■■■□□ 2.47
C9orf40-201ENST00000376854 CASTP20810 708 aaKnown RBP30.45■■■□□ 2.47
C9orf40-201ENST00000376854 CWF19L2Q2TBE0 894 aaKnown RBP30.45■■■□□ 2.47
C9orf40-201ENST00000376854 ERC1Q8IUD2 1116 aa30.45■■■□□ 2.47
C9orf40-201ENST00000376854 PHF14O94880 888 aa30.44■■■□□ 2.46
C9orf40-201ENST00000376854 OVOS2A0A0G2JMS6 1433 aa30.43■■■□□ 2.46
C9orf40-201ENST00000376854 ZSCAN22P10073 491 aaPredicted RBP30.43■■■□□ 2.46
C9orf40-201ENST00000376854 ZC3H6P61129 1189 aaKnown RBP30.43■■■□□ 2.46
C9orf40-201ENST00000376854 TMEM87AQ8NBN3 555 aa30.43■■■□□ 2.46
C9orf40-201ENST00000376854 HEG1Q9ULI3 1381 aa30.43■■■□□ 2.46
C9orf40-201ENST00000376854 C1orf167Q5SNV9 1468 aa30.43■■■□□ 2.46
C9orf40-201ENST00000376854 CPA1P15085 419 aa30.42■■■□□ 2.46
C9orf40-201ENST00000376854 PTH1RQ03431 593 aa30.42■■■□□ 2.46
C9orf40-201ENST00000376854 OFD1O75665 1012 aa30.42■■■□□ 2.46
C9orf40-201ENST00000376854 HYPKQ9NX55 129 aa30.41■■■□□ 2.46
C9orf40-201ENST00000376854 EIF2AK3Q9NZJ5 1116 aaKnown RBP30.41■■■□□ 2.46
C9orf40-201ENST00000376854 SMC3Q9UQE7 1217 aa30.41■■■□□ 2.46
C9orf40-201ENST00000376854 STX6O43752 255 aa30.41■■■□□ 2.46
C9orf40-201ENST00000376854 SYT1P21579 422 aa30.41■■■□□ 2.46
C9orf40-201ENST00000376854 AACSQ86V21 672 aa30.41■■■□□ 2.46
C9orf40-201ENST00000376854 EVI5LQ96CN4 794 aa30.4■■■□□ 2.46
C9orf40-201ENST00000376854 PRPF40BQ6NWY9 871 aaKnown RBP30.4■■■□□ 2.46
C9orf40-201ENST00000376854 DDX17Q92841 729 aaKnown RBP30.4■■■□□ 2.46
C9orf40-201ENST00000376854 CNPY2Q9Y2B0 182 aa30.4■■■□□ 2.46
C9orf40-201ENST00000376854 LINS1Q8NG48 757 aa30.39■■■□□ 2.46
C9orf40-201ENST00000376854 JAKMIP1Q96N16 626 aaKnown RBP30.39■■■□□ 2.46
C9orf40-201ENST00000376854 RGPD5Q99666 1765 aa30.39■■■□□ 2.46
C9orf40-201ENST00000376854 TPM2P07951 284 aa30.39■■■□□ 2.45
C9orf40-201ENST00000376854 PDZRN4Q6ZMN7 1036 aaPredicted RBP30.39■■■□□ 2.45
C9orf40-201ENST00000376854 GRM8O00222 908 aa30.38■■■□□ 2.45
C9orf40-201ENST00000376854 SUCLG2Q96I99 432 aa30.38■■■□□ 2.45
C9orf40-201ENST00000376854 PDRG1Q9NUG6 133 aa30.38■■■□□ 2.45
C9orf40-201ENST00000376854 ZNF500O60304 480 aaPredicted RBP30.38■■■□□ 2.45
C9orf40-201ENST00000376854 LARGE1O95461 756 aa30.38■■■□□ 2.45
C9orf40-201ENST00000376854 ADCK5Q3MIX3 580 aa30.38■■■□□ 2.45
C9orf40-201ENST00000376854 VPS53Q5VIR6 699 aa30.38■■■□□ 2.45
C9orf40-201ENST00000376854 CCDC39Q9UFE4 941 aa30.38■■■□□ 2.45
C9orf40-201ENST00000376854 ZKSCAN5Q9Y2L8 839 aa30.38■■■□□ 2.45
C9orf40-201ENST00000376854 CAMTA1Q9Y6Y1 1673 aa30.37■■■□□ 2.45
C9orf40-201ENST00000376854 ERBB3P21860 1342 aa30.36■■■□□ 2.45
C9orf40-201ENST00000376854 DDX58O95786 925 aaKnown RBP30.36■■■□□ 2.45
C9orf40-201ENST00000376854 F13A1P00488 732 aa30.36■■■□□ 2.45
C9orf40-201ENST00000376854 KCNB2Q92953 911 aa30.36■■■□□ 2.45
C9orf40-201ENST00000376854 TM6SF1Q9BZW5 370 aa30.36■■■□□ 2.45
C9orf40-201ENST00000376854 C19orf44Q9H6X5 657 aa30.36■■■□□ 2.45
C9orf40-201ENST00000376854 ZSWIM6Q9HCJ5 1215 aa30.36■■■□□ 2.45
C9orf40-201ENST00000376854 AIMP1Q12904 312 aaKnown RBP30.35■■■□□ 2.45
C9orf40-201ENST00000376854 CCDC83Q8IWF9 413 aa30.35■■■□□ 2.45
C9orf40-201ENST00000376854 BICC1Q9H694 974 aaKnown RBP30.35■■■□□ 2.45
C9orf40-201ENST00000376854 CYP46A1Q9Y6A2 500 aa30.35■■■□□ 2.45
C9orf40-201ENST00000376854 KAZALD1Q96I82 304 aa30.35■■■□□ 2.45
C9orf40-201ENST00000376854 DDX21Q9NR30 783 aaKnown RBP eCLIP30.35■■■□□ 2.45
C9orf40-201ENST00000376854 ATP6V1DQ9Y5K8 247 aa30.35■■■□□ 2.45
C9orf40-201ENST00000376854 UTYO14607 1347 aa30.34■■■□□ 2.45
C9orf40-201ENST00000376854 G3BP1Q13283 466 aaKnown RBP eCLIP30.34■■■□□ 2.45
C9orf40-201ENST00000376854 CCDC171Q6TFL3 1326 aa30.34■■■□□ 2.45
C9orf40-201ENST00000376854 SASH1O94885 1247 aa30.34■■■□□ 2.45
C9orf40-201ENST00000376854 NECTIN1Q15223 517 aa30.34■■■□□ 2.45
C9orf40-201ENST00000376854 CCDC183Q5T5S1 534 aa30.34■■■□□ 2.45
C9orf40-201ENST00000376854 ZSCAN31Q96LW9 406 aaPredicted RBP30.34■■■□□ 2.45
C9orf40-201ENST00000376854 MCM5P33992 734 aa30.33■■■□□ 2.45
C9orf40-201ENST00000376854 GJB2P29033 226 aa30.33■■■□□ 2.45
C9orf40-201ENST00000376854 UBE2HP62256 183 aa30.33■■■□□ 2.45
C9orf40-201ENST00000376854 EAF2Q96CJ1 260 aaPredicted RBP30.33■■■□□ 2.45
C9orf40-201ENST00000376854 SH2B1Q9NRF2 756 aaPredicted RBP30.33■■■□□ 2.45
C9orf40-201ENST00000376854 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP30.33■■■□□ 2.45
C9orf40-201ENST00000376854 PRKCSHP14314 528 aaPredicted RBP30.32■■■□□ 2.44
C9orf40-201ENST00000376854 ZKSCAN1P17029 563 aaPredicted RBP30.32■■■□□ 2.44
C9orf40-201ENST00000376854 KIF1AQ12756 1690 aa30.31■■■□□ 2.44
C9orf40-201ENST00000376854 HIP1O00291 1037 aa30.31■■■□□ 2.44
C9orf40-201ENST00000376854 CCDC8Q9H0W5 538 aaPredicted RBP30.31■■■□□ 2.44
C9orf40-201ENST00000376854 RBM8AQ9Y5S9 174 aaKnown RBP30.31■■■□□ 2.44
C9orf40-201ENST00000376854 SLC39A6Q13433 755 aa30.3■■■□□ 2.44
C9orf40-201ENST00000376854 PDIA6Q15084 440 aa30.3■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms