RNA–Protein interactions for RNA: ENST00000375740.7

MSH5-202, Transcript of mutS homolog 5, humanhuman

TSL 1 (best) BASIC

Gene MSH5, Length 2,669 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-202ENST00000375740 TTC5Q8N0Z6 440 aa17.01■□□□□ 0.31
MSH5-202ENST00000375740 RBM10P98175 930 aaKnown RBP17.01■□□□□ 0.31
MSH5-202ENST00000375740 COPS6Q7L5N1 327 aa17.01■□□□□ 0.31
MSH5-202ENST00000375740 XAGE3Q8WTP9 111 aa17.01■□□□□ 0.31
MSH5-202ENST00000375740 SUCLG2Q96I99 432 aa17.01■□□□□ 0.31
MSH5-202ENST00000375740 ST18O60284 1047 aa17■□□□□ 0.31
MSH5-202ENST00000375740 IGKV5-2P06315 115 aa17■□□□□ 0.31
MSH5-202ENST00000375740 SNRPA1P09661 255 aaKnown RBP17■□□□□ 0.31
MSH5-202ENST00000375740 CABP4P57796 275 aa17■□□□□ 0.31
MSH5-202ENST00000375740 LARP1Q6PKG0 1096 aaKnown RBP17■□□□□ 0.31
MSH5-202ENST00000375740 KAZALD1Q96I82 304 aa17■□□□□ 0.31
MSH5-202ENST00000375740 SLAIN2Q9P270 581 aa17■□□□□ 0.31
MSH5-202ENST00000375740 PA2G4Q9UQ80 394 aaKnown RBP17■□□□□ 0.31
MSH5-202ENST00000375740 UTYO14607 1347 aa17■□□□□ 0.31
MSH5-202ENST00000375740 ANO2Q9NQ90 1003 aa17■□□□□ 0.31
MSH5-202ENST00000375740 TPM2P07951 284 aa16.99■□□□□ 0.31
MSH5-202ENST00000375740 PRDM11Q9NQV5 511 aa16.99■□□□□ 0.31
MSH5-202ENST00000375740 PKD1L3Q7Z443 1732 aa16.99■□□□□ 0.31
MSH5-202ENST00000375740 PLEKHG2Q9H7P9 1386 aa16.99■□□□□ 0.31
MSH5-202ENST00000375740 FMNL2Q96PY5 1086 aa16.99■□□□□ 0.31
MSH5-202ENST00000375740 DDX11L8A8MPP1 907 aa16.98■□□□□ 0.31
MSH5-202ENST00000375740 PIP4K2AP48426 406 aaPredicted RBP16.98■□□□□ 0.31
MSH5-202ENST00000375740 STRCQ7RTU9 1775 aa16.98■□□□□ 0.31
MSH5-202ENST00000375740 MRC1P22897 1456 aa16.98■□□□□ 0.31
MSH5-202ENST00000375740 BICC1Q9H694 974 aaKnown RBP16.98■□□□□ 0.31
MSH5-202ENST00000375740 SOS2Q07890 1332 aaPredicted RBP16.97■□□□□ 0.31
MSH5-202ENST00000375740 ZNF335Q9H4Z2 1342 aaPredicted RBP16.97■□□□□ 0.31
MSH5-202ENST00000375740 NEXNQ0ZGT2 675 aa16.97■□□□□ 0.31
MSH5-202ENST00000375740 TOM1L2Q6ZVM7 507 aa16.97■□□□□ 0.31
MSH5-202ENST00000375740 CLASRPQ8N2M8 674 aaKnown RBP16.97■□□□□ 0.31
MSH5-202ENST00000375740 WDR17Q8IZU2 1322 aa16.97■□□□□ 0.31
MSH5-202ENST00000375740 NEURL1BA8MQ27 555 aa16.97■□□□□ 0.31
MSH5-202ENST00000375740 MCCP23508 829 aa16.97■□□□□ 0.31
MSH5-202ENST00000375740 LRP10Q7Z4F1 713 aa16.97■□□□□ 0.31
MSH5-202ENST00000375740 MYD88Q99836 296 aa16.97■□□□□ 0.31
MSH5-202ENST00000375740 METTL22Q9BUU2 404 aaPredicted RBP16.97■□□□□ 0.31
MSH5-202ENST00000375740 IL25Q9H293 177 aa16.97■□□□□ 0.31
MSH5-202ENST00000375740 PALD1Q9ULE6 856 aa16.97■□□□□ 0.31
MSH5-202ENST00000375740 SSFA2P28290 1259 aa16.96■□□□□ 0.31
MSH5-202ENST00000375740 ANKRD13DQ6ZTN6 518 aa16.96■□□□□ 0.31
MSH5-202ENST00000375740 AK9Q5TCS8 1911 aa16.96■□□□□ 0.31
MSH5-202ENST00000375740 USP42Q9H9J4 1324 aaKnown RBP16.96■□□□□ 0.31
MSH5-202ENST00000375740 NEK4P51957 841 aa16.96■□□□□ 0.31
MSH5-202ENST00000375740 GBP4Q96PP9 640 aa16.96■□□□□ 0.31
MSH5-202ENST00000375740 PRDM4Q9UKN5 801 aa16.96■□□□□ 0.31
MSH5-202ENST00000375740 GCKRQ14397 625 aa16.95■□□□□ 0.3
MSH5-202ENST00000375740 ERC1Q8IUD2 1116 aa16.95■□□□□ 0.3
MSH5-202ENST00000375740 CNTROBQ8N137 903 aa16.95■□□□□ 0.3
MSH5-202ENST00000375740 ZCRB1Q8TBF4 217 aaKnown RBP16.95■□□□□ 0.3
MSH5-202ENST00000375740 PODXL2Q9NZ53 605 aa16.95■□□□□ 0.3
MSH5-202ENST00000375740 TTC41PQ6P2S7 1318 aa16.95■□□□□ 0.3
MSH5-202ENST00000375740 KDM4FA0A1W2PPD8 638 aa16.94■□□□□ 0.3
MSH5-202ENST00000375740 GLRX3O76003 335 aaKnown RBP16.94■□□□□ 0.3
MSH5-202ENST00000375740 SASH1O94885 1247 aa16.93■□□□□ 0.3
MSH5-202ENST00000375740 IFIT2P09913 472 aaKnown RBP16.93■□□□□ 0.3
MSH5-202ENST00000375740 ANAPC15P60006 121 aa16.93■□□□□ 0.3
MSH5-202ENST00000375740 G3BP1Q13283 466 aaKnown RBP eCLIP16.93■□□□□ 0.3
MSH5-202ENST00000375740 ECHDC1Q9NTX5 307 aa16.93■□□□□ 0.3
MSH5-202ENST00000375740 EPHA10Q5JZY3 1008 aa16.93■□□□□ 0.3
MSH5-202ENST00000375740 AACSQ86V21 672 aa16.93■□□□□ 0.3
MSH5-202ENST00000375740 JARID2Q92833 1246 aaPredicted RBP16.93■□□□□ 0.3
MSH5-202ENST00000375740 ISY1Q9ULR0 285 aaKnown RBP16.93■□□□□ 0.3
MSH5-202ENST00000375740 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.93■□□□□ 0.3
MSH5-202ENST00000375740 PCDH11XQ9BZA7 1347 aa16.92■□□□□ 0.3
MSH5-202ENST00000375740 PCDH11YQ9BZA8 1340 aa16.92■□□□□ 0.3
MSH5-202ENST00000375740 SGSM2O43147 1006 aa16.92■□□□□ 0.3
MSH5-202ENST00000375740 ZGPATQ8N5A5 531 aaKnown RBP16.92■□□□□ 0.3
MSH5-202ENST00000375740 CWC22Q9HCG8 908 aaKnown RBP16.92■□□□□ 0.3
MSH5-202ENST00000375740 COL5A2P05997 1499 aaPredicted RBP16.92■□□□□ 0.3
MSH5-202ENST00000375740 EPB41L2O43491 1005 aaKnown RBP16.91■□□□□ 0.3
MSH5-202ENST00000375740 KLHDC4Q8TBB5 520 aa16.91■□□□□ 0.3
MSH5-202ENST00000375740 PARP4Q9UKK3 1724 aaKnown RBP16.91■□□□□ 0.3
MSH5-202ENST00000375740 HSPA4P34932 840 aa16.91■□□□□ 0.3
MSH5-202ENST00000375740 NUCB2P80303 420 aa16.91■□□□□ 0.3
MSH5-202ENST00000375740 CWC27Q6UX04 472 aaKnown RBP16.91■□□□□ 0.3
MSH5-202ENST00000375740 IL17RAQ96F46 866 aa16.91■□□□□ 0.3
MSH5-202ENST00000375740 GPATCH3Q96I76 525 aa16.91■□□□□ 0.3
MSH5-202ENST00000375740 SIL1Q9H173 461 aa16.91■□□□□ 0.3
MSH5-202ENST00000375740 STRN4Q9NRL3 753 aa16.91■□□□□ 0.3
MSH5-202ENST00000375740 EAF2Q96CJ1 260 aaPredicted RBP16.9■□□□□ 0.3
MSH5-202ENST00000375740 ARID3AQ99856 593 aa16.9■□□□□ 0.3
MSH5-202ENST00000375740 CARD10Q9BWT7 1032 aa16.9■□□□□ 0.3
MSH5-202ENST00000375740 FAM13BQ9NYF5 915 aa16.9■□□□□ 0.3
MSH5-202ENST00000375740 ERVV-2B6SEH9 535 aa16.9■□□□□ 0.3
MSH5-202ENST00000375740 ATP5J2-PTCD1G3V325 749 aa16.9■□□□□ 0.3
MSH5-202ENST00000375740 PTCD1O75127 700 aaKnown RBP16.9■□□□□ 0.3
MSH5-202ENST00000375740 OFD1O75665 1012 aa16.9■□□□□ 0.3
MSH5-202ENST00000375740 IL2RBP14784 551 aa16.9■□□□□ 0.3
MSH5-202ENST00000375740 CLEC17AQ6ZS10 378 aa16.9■□□□□ 0.3
MSH5-202ENST00000375740 DDX54Q8TDD1 881 aaKnown RBP16.9■□□□□ 0.3
MSH5-202ENST00000375740 TMX3Q96JJ7 454 aa16.9■□□□□ 0.3
MSH5-202ENST00000375740 CCDC8Q9H0W5 538 aaPredicted RBP16.9■□□□□ 0.3
MSH5-202ENST00000375740 MCM2P49736 904 aa16.89■□□□□ 0.29
MSH5-202ENST00000375740 PKP1Q13835 747 aa16.89■□□□□ 0.29
MSH5-202ENST00000375740 NBPF26B4DH59 902 aa16.89■□□□□ 0.29
MSH5-202ENST00000375740 CYP2E1P05181 493 aaPredicted RBP16.89■□□□□ 0.29
MSH5-202ENST00000375740 EVA1CP58658 441 aa16.89■□□□□ 0.29
MSH5-202ENST00000375740 NBPF14Q5TI25 921 aa16.89■□□□□ 0.29
MSH5-202ENST00000375740 NBPF10Q6P3W6 841 aaKnown RBP16.89■□□□□ 0.29
MSH5-202ENST00000375740 ZSCAN30Q86W11 494 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms