RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 MAP3K5Q99683 1374 aa13.37□□□□□ -0.27
CCDC40-203ENST00000374877 PLEKHO1Q53GL0 409 aaPredicted RBP13.37□□□□□ -0.27
CCDC40-203ENST00000374877 CERKQ8TCT0 537 aa13.37□□□□□ -0.27
CCDC40-203ENST00000374877 COL5A2P05997 1499 aaPredicted RBP13.37□□□□□ -0.27
CCDC40-203ENST00000374877 WDR33Q9C0J8 1336 aaKnown RBP13.37□□□□□ -0.27
CCDC40-203ENST00000374877 ANAPC15P60006 121 aa13.37□□□□□ -0.27
CCDC40-203ENST00000374877 LRRC37A3O60309 1634 aa13.37□□□□□ -0.27
CCDC40-203ENST00000374877 WDR17Q8IZU2 1322 aa13.37□□□□□ -0.27
CCDC40-203ENST00000374877 PLCB2Q00722 1185 aa13.36□□□□□ -0.27
CCDC40-203ENST00000374877 RTF1Q92541 710 aaKnown RBP13.36□□□□□ -0.27
CCDC40-203ENST00000374877 GNAT3A8MTJ3 354 aa13.36□□□□□ -0.27
CCDC40-203ENST00000374877 NECTIN2Q92692 538 aa13.36□□□□□ -0.27
CCDC40-203ENST00000374877 JARID2Q92833 1246 aaPredicted RBP13.36□□□□□ -0.27
CCDC40-203ENST00000374877 COL14A1Q05707 1796 aaKnown RBP13.36□□□□□ -0.27
CCDC40-203ENST00000374877 CRB1P82279 1406 aa13.36□□□□□ -0.27
CCDC40-203ENST00000374877 PNMA6EA0A0J9YXQ4 647 aa13.36□□□□□ -0.27
CCDC40-203ENST00000374877 UNC5CLQ8IV45 518 aa13.36□□□□□ -0.27
CCDC40-203ENST00000374877 TSC1Q92574 1164 aa13.35□□□□□ -0.27
CCDC40-203ENST00000374877 STK31Q9BXU1 1019 aa13.35□□□□□ -0.27
CCDC40-203ENST00000374877 TTC12Q9H892 705 aaPredicted RBP13.35□□□□□ -0.27
CCDC40-203ENST00000374877 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.35□□□□□ -0.27
CCDC40-203ENST00000374877 OVOS2A0A0G2JMS6 1433 aa13.35□□□□□ -0.27
CCDC40-203ENST00000374877 CSB-PGBD3P0DP91 1061 aa13.35□□□□□ -0.27
CCDC40-203ENST00000374877 FKBP5Q13451 457 aaPredicted RBP13.35□□□□□ -0.27
CCDC40-203ENST00000374877 C17orf53Q8N3J3 647 aaPredicted RBP13.35□□□□□ -0.27
CCDC40-203ENST00000374877 NLRP2Q9NX02 1062 aa13.35□□□□□ -0.27
CCDC40-203ENST00000374877 HCLS1P14317 486 aaPredicted RBP13.35□□□□□ -0.27
CCDC40-203ENST00000374877 FAM184AQ8NB25 1140 aa13.35□□□□□ -0.27
CCDC40-203ENST00000374877 SRCIN1Q9C0H9 1055 aa13.35□□□□□ -0.27
CCDC40-203ENST00000374877 IL1RAPL2Q9NP60 686 aa13.35□□□□□ -0.27
CCDC40-203ENST00000374877 SALL3Q9BXA9 1300 aa13.34□□□□□ -0.27
CCDC40-203ENST00000374877 ADCY5O95622 1261 aa13.34□□□□□ -0.27
CCDC40-203ENST00000374877 LARP6Q9BRS8 491 aaKnown RBP13.34□□□□□ -0.27
CCDC40-203ENST00000374877 PRDM10Q9NQV6 1147 aa13.34□□□□□ -0.27
CCDC40-203ENST00000374877 BABAM1Q9NWV8 329 aa13.34□□□□□ -0.27
CCDC40-203ENST00000374877 CNPY2Q9Y2B0 182 aa13.34□□□□□ -0.27
CCDC40-203ENST00000374877 MAP4K4O95819 1239 aaPredicted RBP13.34□□□□□ -0.27
CCDC40-203ENST00000374877 PIP4K2BP78356 416 aa13.34□□□□□ -0.27
CCDC40-203ENST00000374877 AKAP4Q5JQC9 854 aa13.34□□□□□ -0.27
CCDC40-203ENST00000374877 CCDC183Q5T5S1 534 aa13.34□□□□□ -0.27
CCDC40-203ENST00000374877 IL25Q9H293 177 aa13.34□□□□□ -0.27
CCDC40-203ENST00000374877 NOLC1Q14978 699 aaKnown RBP eCLIP13.33□□□□□ -0.28
CCDC40-203ENST00000374877 MYRIPQ8NFW9 859 aa13.33□□□□□ -0.28
CCDC40-203ENST00000374877 RAPGEF4Q8WZA2 1011 aa13.33□□□□□ -0.28
CCDC40-203ENST00000374877 GNAI3P08754 354 aa13.33□□□□□ -0.28
CCDC40-203ENST00000374877 TATP17735 454 aaPredicted RBP13.33□□□□□ -0.28
CCDC40-203ENST00000374877 PIBF1Q8WXW3 757 aa13.33□□□□□ -0.28
CCDC40-203ENST00000374877 FIBPO43427 364 aa13.33□□□□□ -0.28
CCDC40-203ENST00000374877 UVSSAQ2YD98 709 aa13.33□□□□□ -0.28
CCDC40-203ENST00000374877 CARD10Q9BWT7 1032 aa13.33□□□□□ -0.28
CCDC40-203ENST00000374877 LRRFIP2Q9Y608 721 aaKnown RBP13.33□□□□□ -0.28
CCDC40-203ENST00000374877 CEMIPQ8WUJ3 1361 aa13.32□□□□□ -0.28
CCDC40-203ENST00000374877 NUTM1Q86Y26 1132 aa13.32□□□□□ -0.28
CCDC40-203ENST00000374877 ATP8B2P98198 1209 aa13.32□□□□□ -0.28
CCDC40-203ENST00000374877 FLIIQ13045 1269 aa13.31□□□□□ -0.28
CCDC40-203ENST00000374877 ZNF530Q6P9A1 599 aaPredicted RBP13.31□□□□□ -0.28
CCDC40-203ENST00000374877 PRDM4Q9UKN5 801 aa13.31□□□□□ -0.28
CCDC40-203ENST00000374877 MEGF6O75095 1541 aa13.31□□□□□ -0.28
CCDC40-203ENST00000374877 FAM177BA6PVY3 158 aa13.31□□□□□ -0.28
CCDC40-203ENST00000374877 SPG7Q9UQ90 795 aa13.31□□□□□ -0.28
CCDC40-203ENST00000374877 PKD1L3Q7Z443 1732 aa13.31□□□□□ -0.28
CCDC40-203ENST00000374877 TCHHQ07283 1943 aa13.31□□□□□ -0.28
CCDC40-203ENST00000374877 ADAMTS7Q9UKP4 1686 aa13.3□□□□□ -0.28
CCDC40-203ENST00000374877 DTNBO60941 627 aa13.3□□□□□ -0.28
CCDC40-203ENST00000374877 HSPA4P34932 840 aa13.3□□□□□ -0.28
CCDC40-203ENST00000374877 PRIMPOLQ96LW4 560 aa13.3□□□□□ -0.28
CCDC40-203ENST00000374877 ZSCAN22P10073 491 aaPredicted RBP13.3□□□□□ -0.28
CCDC40-203ENST00000374877 HMGN5P82970 282 aaKnown RBP13.3□□□□□ -0.28
CCDC40-203ENST00000374877 C1orf141Q5JVX7 400 aa13.3□□□□□ -0.28
CCDC40-203ENST00000374877 IL17REQ8NFR9 667 aa13.3□□□□□ -0.28
CCDC40-203ENST00000374877 CCDC94Q9BW85 323 aaPredicted RBP13.3□□□□□ -0.28
CCDC40-203ENST00000374877 RPAP1Q9BWH6 1393 aaPredicted RBP13.3□□□□□ -0.28
CCDC40-203ENST00000374877 JCADQ9P266 1359 aa13.3□□□□□ -0.28
CCDC40-203ENST00000374877 PARP4Q9UKK3 1724 aaKnown RBP13.3□□□□□ -0.28
CCDC40-203ENST00000374877 TOM1L2Q6ZVM7 507 aa13.3□□□□□ -0.28
CCDC40-203ENST00000374877 SMAP1Q8IYB5 467 aaPredicted RBP13.3□□□□□ -0.28
CCDC40-203ENST00000374877 STAP2Q9UGK3 403 aa13.3□□□□□ -0.28
CCDC40-203ENST00000374877 STX6O43752 255 aa13.29□□□□□ -0.28
CCDC40-203ENST00000374877 GIMAP6Q6P9H5 292 aa13.29□□□□□ -0.28
CCDC40-203ENST00000374877 EVA1CP58658 441 aa13.29□□□□□ -0.28
CCDC40-203ENST00000374877 UBE2HP62256 183 aa13.29□□□□□ -0.28
CCDC40-203ENST00000374877 SMC3Q9UQE7 1217 aa13.29□□□□□ -0.28
CCDC40-203ENST00000374877 LETM1O95202 739 aaPredicted RBP13.29□□□□□ -0.28
CCDC40-203ENST00000374877 SYT1P21579 422 aa13.29□□□□□ -0.28
CCDC40-203ENST00000374877 AK2P54819 239 aa13.29□□□□□ -0.28
CCDC40-203ENST00000374877 UBTFL1P0CB47 393 aaPredicted RBP13.28□□□□□ -0.28
CCDC40-203ENST00000374877 SOS1Q07889 1333 aaPredicted RBP13.28□□□□□ -0.28
CCDC40-203ENST00000374877 TMEM87AQ8NBN3 555 aa13.28□□□□□ -0.28
CCDC40-203ENST00000374877 SURF6O75683 361 aaKnown RBP13.28□□□□□ -0.28
CCDC40-203ENST00000374877 CCDC30Q5VVM6 783 aa13.28□□□□□ -0.28
CCDC40-203ENST00000374877 SNX14Q9Y5W7 946 aa13.28□□□□□ -0.28
CCDC40-203ENST00000374877 KDM4AO75164 1064 aa13.27□□□□□ -0.28
CCDC40-203ENST00000374877 TAF7Q15545 349 aaPredicted RBP13.27□□□□□ -0.28
CCDC40-203ENST00000374877 BTG4Q9NY30 223 aa13.27□□□□□ -0.28
CCDC40-203ENST00000374877 CPA1P15085 419 aa13.27□□□□□ -0.28
CCDC40-203ENST00000374877 KIF3AQ9Y496 699 aa13.27□□□□□ -0.28
CCDC40-203ENST00000374877 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.27□□□□□ -0.28
CCDC40-203ENST00000374877 RAD50Q92878 1312 aa13.27□□□□□ -0.29
CCDC40-203ENST00000374877 RNMTO43148 476 aaKnown RBP13.27□□□□□ -0.29
CCDC40-203ENST00000374877 F13A1P00488 732 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms