RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 MYD88Q99836 296 aa17.16■□□□□ 0.34
PTPRF-202ENST00000372405 C9orf78Q9NZ63 289 aaPredicted RBP17.16■□□□□ 0.34
PTPRF-202ENST00000372405 GRM8O00222 908 aa17.15■□□□□ 0.34
PTPRF-202ENST00000372405 PLEKHM2Q8IWE5 1019 aa17.15■□□□□ 0.34
PTPRF-202ENST00000372405 NPM2Q86SE8 214 aaKnown RBP17.15■□□□□ 0.34
PTPRF-202ENST00000372405 PLBD2Q8NHP8 589 aa17.15■□□□□ 0.34
PTPRF-202ENST00000372405 RBM42Q9BTD8 480 aaKnown RBP17.15■□□□□ 0.34
PTPRF-202ENST00000372405 GCKRQ14397 625 aa17.14■□□□□ 0.33
PTPRF-202ENST00000372405 NEXNQ0ZGT2 675 aa17.13■□□□□ 0.33
PTPRF-202ENST00000372405 MTX1Q13505 466 aa17.13■□□□□ 0.33
PTPRF-202ENST00000372405 ACSBG1Q96GR2 724 aa17.13■□□□□ 0.33
PTPRF-202ENST00000372405 SUCLG2Q96I99 432 aa17.13■□□□□ 0.33
PTPRF-202ENST00000372405 USP21Q9UK80 565 aa17.13■□□□□ 0.33
PTPRF-202ENST00000372405 SRGAP3O43295 1099 aa17.13■□□□□ 0.33
PTPRF-202ENST00000372405 BMP2KLQ5H9B9 411 aa17.13■□□□□ 0.33
PTPRF-202ENST00000372405 MSH5O43196 834 aa17.12■□□□□ 0.33
PTPRF-202ENST00000372405 TEX13AQ9BXU3 409 aaPredicted RBP17.12■□□□□ 0.33
PTPRF-202ENST00000372405 BCL11AQ9H165 835 aa17.12■□□□□ 0.33
PTPRF-202ENST00000372405 THSD7AQ9UPZ6 1657 aa17.12■□□□□ 0.33
PTPRF-202ENST00000372405 ATP5J2-PTCD1G3V325 749 aa17.11■□□□□ 0.33
PTPRF-202ENST00000372405 GSPT1P15170 499 aaKnown RBP17.11■□□□□ 0.33
PTPRF-202ENST00000372405 ANP32AP39687 249 aaKnown RBP17.11■□□□□ 0.33
PTPRF-202ENST00000372405 CYP19A1P11511 503 aaPredicted RBP17.1■□□□□ 0.33
PTPRF-202ENST00000372405 BICC1Q9H694 974 aaKnown RBP17.1■□□□□ 0.33
PTPRF-202ENST00000372405 SALL3Q9BXA9 1300 aa17.1■□□□□ 0.33
PTPRF-202ENST00000372405 LRRCC1Q9C099 1032 aa17.09■□□□□ 0.33
PTPRF-202ENST00000372405 ZBTB3Q9H5J0 574 aa17.09■□□□□ 0.33
PTPRF-202ENST00000372405 TUBGCP6Q96RT7 1819 aa17.09■□□□□ 0.33
PTPRF-202ENST00000372405 KCNQ2O43526 872 aa17.09■□□□□ 0.33
PTPRF-202ENST00000372405 STARD3NLO95772 234 aa17.09■□□□□ 0.33
PTPRF-202ENST00000372405 EPHA10Q5JZY3 1008 aa17.09■□□□□ 0.33
PTPRF-202ENST00000372405 JARID2Q92833 1246 aaPredicted RBP17.09■□□□□ 0.33
PTPRF-202ENST00000372405 ZBTB47Q9UFB7 747 aaPredicted RBP17.09■□□□□ 0.33
PTPRF-202ENST00000372405 CICQ96RK0 1608 aaPredicted RBP17.09■□□□□ 0.33
PTPRF-202ENST00000372405 SURF6O75683 361 aaKnown RBP17.08■□□□□ 0.33
PTPRF-202ENST00000372405 CASP7P55210 303 aa17.08■□□□□ 0.33
PTPRF-202ENST00000372405 TTC22Q5TAA0 569 aa17.08■□□□□ 0.32
PTPRF-202ENST00000372405 A0A0G2JS52 829 aa17.07■□□□□ 0.32
PTPRF-202ENST00000372405 HDAC5Q9UQL6 1122 aa17.07■□□□□ 0.32
PTPRF-202ENST00000372405 ZBTB1Q9Y2K1 713 aa17.07■□□□□ 0.32
PTPRF-202ENST00000372405 NOP58Q9Y2X3 529 aaKnown RBP17.07■□□□□ 0.32
PTPRF-202ENST00000372405 AFF2P51816 1311 aa17.06■□□□□ 0.32
PTPRF-202ENST00000372405 MEX3CQ5U5Q3 659 aaKnown RBP17.06■□□□□ 0.32
PTPRF-202ENST00000372405 UBE3BQ7Z3V4 1068 aa17.06■□□□□ 0.32
PTPRF-202ENST00000372405 IPO9Q96P70 1041 aaKnown RBP17.06■□□□□ 0.32
PTPRF-202ENST00000372405 ZNF330Q9Y3S2 320 aaPredicted RBP17.06■□□□□ 0.32
PTPRF-202ENST00000372405 COL15A1P39059 1388 aa17.06■□□□□ 0.32
PTPRF-202ENST00000372405 A0A087WZG4 1122 aa17.06■□□□□ 0.32
PTPRF-202ENST00000372405 OSBPL3Q9H4L5 887 aa17.06■□□□□ 0.32
PTPRF-202ENST00000372405 PA2G4Q9UQ80 394 aaKnown RBP17.06■□□□□ 0.32
PTPRF-202ENST00000372405 MYH14Q7Z406 1995 aaKnown RBP17.05■□□□□ 0.32
PTPRF-202ENST00000372405 RREB1Q92766 1687 aa17.05■□□□□ 0.32
PTPRF-202ENST00000372405 RAB11FIP3O75154 756 aa17.05■□□□□ 0.32
PTPRF-202ENST00000372405 PDE1AP54750 535 aa17.05■□□□□ 0.32
PTPRF-202ENST00000372405 RHPN1Q8TCX5 695 aa17.05■□□□□ 0.32
PTPRF-202ENST00000372405 IL1RAPL2Q9NP60 686 aa17.05■□□□□ 0.32
PTPRF-202ENST00000372405 PALLDQ8WX93 1383 aa17.04■□□□□ 0.32
PTPRF-202ENST00000372405 ATRNO75882 1429 aa17.04■□□□□ 0.32
PTPRF-202ENST00000372405 LOC102724428A0A0B4J2F2 783 aa17.04■□□□□ 0.32
PTPRF-202ENST00000372405 H7C1W4 665 aa17.04■□□□□ 0.32
PTPRF-202ENST00000372405 SIK1P57059 783 aa17.04■□□□□ 0.32
PTPRF-202ENST00000372405 TSHZ3Q63HK5 1081 aa17.04■□□□□ 0.32
PTPRF-202ENST00000372405 PTF1AQ7RTS3 328 aa17.04■□□□□ 0.32
PTPRF-202ENST00000372405 GJD4Q96KN9 370 aaPredicted RBP17.04■□□□□ 0.32
PTPRF-202ENST00000372405 ISCA1Q9BUE6 129 aa17.04■□□□□ 0.32
PTPRF-202ENST00000372405 COL5A3P25940 1745 aaPredicted RBP17.03■□□□□ 0.32
PTPRF-202ENST00000372405 ITPK1Q13572 414 aa17.03■□□□□ 0.32
PTPRF-202ENST00000372405 RABL6Q3YEC7 729 aaPredicted RBP17.03■□□□□ 0.32
PTPRF-202ENST00000372405 CWC25Q9NXE8 425 aaPredicted RBP17.03■□□□□ 0.32
PTPRF-202ENST00000372405 ANKRD36CQ5JPF3 1778 aa17.03■□□□□ 0.32
PTPRF-202ENST00000372405 NUP98P52948 1817 aa17.03■□□□□ 0.32
PTPRF-202ENST00000372405 MYT1Q01538 1121 aa17.02■□□□□ 0.32
PTPRF-202ENST00000372405 TCIRG1Q13488 830 aa17.02■□□□□ 0.32
PTPRF-202ENST00000372405 INTS5Q6P9B9 1019 aaKnown RBP17.02■□□□□ 0.32
PTPRF-202ENST00000372405 TBC1D9Q6ZT07 1266 aa17.02■□□□□ 0.32
PTPRF-202ENST00000372405 CCDC191Q8NCU4 936 aa17.02■□□□□ 0.32
PTPRF-202ENST00000372405 KIF1BPQ96EK5 621 aa17.02■□□□□ 0.32
PTPRF-202ENST00000372405 ZNF831Q5JPB2 1677 aa17.02■□□□□ 0.32
PTPRF-202ENST00000372405 MAP3K15Q6ZN16 1313 aa17.02■□□□□ 0.32
PTPRF-202ENST00000372405 MX1P20591 662 aa17.02■□□□□ 0.31
PTPRF-202ENST00000372405 ATP6V1AP38606 617 aa17.02■□□□□ 0.31
PTPRF-202ENST00000372405 NHSQ6T4R5 1651 aa17.01■□□□□ 0.31
PTPRF-202ENST00000372405 BTAF1O14981 1849 aa17.01■□□□□ 0.31
PTPRF-202ENST00000372405 SDSP20132 328 aa17.01■□□□□ 0.31
PTPRF-202ENST00000372405 HLFQ16534 295 aa17.01■□□□□ 0.31
PTPRF-202ENST00000372405 KIF6Q6ZMV9 814 aa17.01■□□□□ 0.31
PTPRF-202ENST00000372405 KLHDC4Q8TBB5 520 aa17.01■□□□□ 0.31
PTPRF-202ENST00000372405 TBC1D32Q96NH3 1257 aa17.01■□□□□ 0.31
PTPRF-202ENST00000372405 STAP2Q9UGK3 403 aa17.01■□□□□ 0.31
PTPRF-202ENST00000372405 IL6STP40189 918 aaPredicted RBP17■□□□□ 0.31
PTPRF-202ENST00000372405 RFX5P48382 616 aaPredicted RBP17■□□□□ 0.31
PTPRF-202ENST00000372405 MFAP1P55081 439 aaKnown RBP17■□□□□ 0.31
PTPRF-202ENST00000372405 FOXO4P98177 505 aa17■□□□□ 0.31
PTPRF-202ENST00000372405 HSP90AB4PQ58FF6 505 aa17■□□□□ 0.31
PTPRF-202ENST00000372405 RTL5Q5HYW3 569 aaPredicted RBP17■□□□□ 0.31
PTPRF-202ENST00000372405 FAM182BQ5T319 152 aa17■□□□□ 0.31
PTPRF-202ENST00000372405 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17■□□□□ 0.31
PTPRF-202ENST00000372405 SBF2Q86WG5 1849 aa17■□□□□ 0.31
PTPRF-202ENST00000372405 CRKLP46109 303 aaKnown RBP17■□□□□ 0.31
PTPRF-202ENST00000372405 TRIM28Q13263 835 aaKnown RBP17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms