RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 TAOK3Q9H2K8 898 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 ZFYVE28Q9HCC9 887 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 KCNG1Q9UIX4 513 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 TBX22Q9Y458 520 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 CTCFP49711 727 aaPredicted RBP4.81□□□□□ -1.64
USH2A-202ENST00000366942 DZIP1LQ8IYY4 767 aaKnown RBP4.81□□□□□ -1.64
USH2A-202ENST00000366942 ERO1AQ96HE7 468 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 ARHGEF10LQ9HCE6 1279 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 MSRAQ9UJ68 235 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 FBXO3Q9UK99 471 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 NOL7Q9UMY1 257 aaKnown RBP4.81□□□□□ -1.64
USH2A-202ENST00000366942 NSFL1CQ9UNZ2 370 aaKnown RBP4.81□□□□□ -1.64
USH2A-202ENST00000366942 MAGI1Q96QZ7 1491 aaPredicted RBP4.81□□□□□ -1.64
USH2A-202ENST00000366942 EIF3DO15371 548 aaKnown RBP eCLIP4.81□□□□□ -1.64
USH2A-202ENST00000366942 TDO2P48775 406 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 APLP1P51693 650 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 APOBRQ0VD83 1088 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 R3HDM1Q15032 1099 aaKnown RBP4.81□□□□□ -1.64
USH2A-202ENST00000366942 KIAA1841Q6NSI8 718 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 ZNF449Q6P9G9 518 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 LARP1Q6PKG0 1096 aaKnown RBP4.81□□□□□ -1.64
USH2A-202ENST00000366942 TTC6Q86TZ1 520 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 YAF2Q8IY57 180 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 FTOQ9C0B1 505 aaKnown RBP eCLIP4.81□□□□□ -1.64
USH2A-202ENST00000366942 LUC7LQ9NQ29 371 aaKnown RBP4.81□□□□□ -1.64
USH2A-202ENST00000366942 CCDC141Q6ZP82 1450 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 DPYDQ12882 1025 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 TTLL6Q8N841 843 aa4.81□□□□□ -1.64
USH2A-202ENST00000366942 IRAK1BP1Q5VVH5 260 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 ITPRIPQ8IWB1 547 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 IRF2BPLQ9H1B7 796 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 RNF41Q9H4P4 317 aaPredicted RBP4.8□□□□□ -1.64
USH2A-202ENST00000366942 NOP56O00567 594 aaKnown RBP4.8□□□□□ -1.64
USH2A-202ENST00000366942 HOOK3Q86VS8 718 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 UNC5CLQ8IV45 518 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 CCDC146Q8IYE0 955 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 TXLNBQ8N3L3 684 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 PIDD1Q9HB75 910 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 PSDA5PKW4 1024 aaPredicted RBP4.8□□□□□ -1.64
USH2A-202ENST00000366942 ELF1P32519 619 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 DNM2P50570 870 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 CDR1P51861 262 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 CETN1Q12798 172 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 EIF2B5Q13144 721 aaKnown RBP4.8□□□□□ -1.64
USH2A-202ENST00000366942 DDX10Q13206 875 aaKnown RBP4.8□□□□□ -1.64
USH2A-202ENST00000366942 HSP90AB2PQ58FF8 381 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 HDGFL1Q5TGJ6 251 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 SKA1Q96BD8 255 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 RUBCNLQ9H714 662 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 KRT10P13645 584 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 AMPD2Q01433 879 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 KCTD2Q14681 263 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 RRP12Q5JTH9 1297 aaKnown RBP4.8□□□□□ -1.64
USH2A-202ENST00000366942 ELMOD1Q8N336 334 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 SYAP1Q96A49 352 aaPredicted RBP4.8□□□□□ -1.64
USH2A-202ENST00000366942 AKAP7Q9P0M2 348 aaPredicted RBP4.8□□□□□ -1.64
USH2A-202ENST00000366942 SYCE3A1L190 88 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 VAMP4O75379 141 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 MPNDQ8N594 471 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 TTC16Q8NEE8 873 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 TBC1D22AQ8WUA7 517 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 HACL1Q9UJ83 578 aa4.8□□□□□ -1.64
USH2A-202ENST00000366942 TFRCP02786 760 aaKnown RBP4.79□□□□□ -1.64
USH2A-202ENST00000366942 C9orf131Q5VYM1 1079 aa4.79□□□□□ -1.64
USH2A-202ENST00000366942 GOLGA1Q92805 767 aa4.79□□□□□ -1.64
USH2A-202ENST00000366942 LMCD1Q9NZU5 365 aa4.79□□□□□ -1.64
USH2A-202ENST00000366942 CEP131Q9UPN4 1083 aa4.79□□□□□ -1.64
USH2A-202ENST00000366942 ADGRL1O94910 1474 aa4.79□□□□□ -1.64
USH2A-202ENST00000366942 CARNS1A5YM72 827 aa4.79□□□□□ -1.64
USH2A-202ENST00000366942 TRIM37O94972 964 aa4.79□□□□□ -1.64
USH2A-202ENST00000366942 PDE4BQ07343 736 aa4.79□□□□□ -1.64
USH2A-202ENST00000366942 CFAP36Q96G28 342 aa4.79□□□□□ -1.64
USH2A-202ENST00000366942 BTBD11A6QL63 1104 aa4.79□□□□□ -1.64
USH2A-202ENST00000366942 ZW10O43264 779 aa4.79□□□□□ -1.64
USH2A-202ENST00000366942 SMC2O95347 1197 aa4.79□□□□□ -1.64
USH2A-202ENST00000366942 PRDM5Q9NQX1 630 aaPredicted RBP4.79□□□□□ -1.64
USH2A-202ENST00000366942 NIP7Q9Y221 180 aaKnown RBP eCLIP4.79□□□□□ -1.64
USH2A-202ENST00000366942 TYW5A2RUC4 315 aaKnown RBP4.79□□□□□ -1.64
USH2A-202ENST00000366942 SKAP1Q86WV1 359 aa4.79□□□□□ -1.64
USH2A-202ENST00000366942 GGA1Q9UJY5 639 aa4.79□□□□□ -1.64
USH2A-202ENST00000366942 DCAF1Q9Y4B6 1507 aa4.79□□□□□ -1.64
USH2A-202ENST00000366942 SNX16P57768 344 aa4.79□□□□□ -1.64
USH2A-202ENST00000366942 ANAPC15P60006 121 aa4.79□□□□□ -1.64
USH2A-202ENST00000366942 IQCA1Q86XH1 822 aa4.79□□□□□ -1.64
USH2A-202ENST00000366942 UPF3BQ9BZI7 483 aaKnown RBP4.79□□□□□ -1.64
USH2A-202ENST00000366942 CRNKL1Q9BZJ0 848 aaKnown RBP4.79□□□□□ -1.64
USH2A-202ENST00000366942 CD2APQ9Y5K6 639 aa4.79□□□□□ -1.64
USH2A-202ENST00000366942 COPB2P35606 906 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 STIM1Q13586 685 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 AZI2Q9H6S1 392 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 PTPDC1A2A3K4 754 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 XRCC6P12956 609 aaKnown RBP eCLIP4.78□□□□□ -1.64
USH2A-202ENST00000366942 PTMSP20962 102 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 CIAPIN1Q6FI81 312 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 EXOC8Q8IYI6 725 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 MICALL1Q8N3F8 863 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 GOLGA6L1Q8N7Z2 621 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 C22orf23Q9BZE7 217 aa4.78□□□□□ -1.64
USH2A-202ENST00000366942 TRIM6Q9C030 488 aaPredicted RBP4.78□□□□□ -1.64
USH2A-202ENST00000366942 WDR62O43379 1518 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms