RNA–Protein interactions for RNA: ENST00000357162.6

VPS13B-202, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13B, Length 14,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-202ENST00000357162 LRRFIP2Q9Y608 721 aaKnown RBP7.56□□□□□ -1.2
VPS13B-202ENST00000357162 NCOR1O75376 2440 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 GGT6Q6P531 493 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 CCDC121Q6ZUS5 278 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 BAG4O95429 457 aaKnown RBP7.56□□□□□ -1.2
VPS13B-202ENST00000357162 GBP1P32455 592 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 STX6O43752 255 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 KIF4BQ2VIQ3 1234 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 CFAP58Q5T655 872 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 CTAGE15A4D2H0 777 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 SLU7O95391 586 aaKnown RBP7.56□□□□□ -1.2
VPS13B-202ENST00000357162 CTAGE8P0CG41 777 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 CTAGE6Q86UF2 777 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 CTAGE4Q8IX94 777 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 AKAP2Q9Y2D5 859 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 TICAM2Q86XR7 235 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 GTF2E1P29083 439 aaPredicted RBP7.56□□□□□ -1.2
VPS13B-202ENST00000357162 IFFO1Q0D2I5 559 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 IMPACTQ9P2X3 320 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 A0A087WZG4 1122 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 VAV2P52735 878 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 RARSP54136 660 aaKnown RBP7.55□□□□□ -1.2
VPS13B-202ENST00000357162 KRT83P78385 493 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 TSG101Q99816 390 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 HMGB3O15347 200 aaKnown RBP7.55□□□□□ -1.2
VPS13B-202ENST00000357162 KIF5BP33176 963 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 SLMAPQ14BN4 828 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 IFT140Q96RY7 1462 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 FSD2A1L4K1 749 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 ALDH3A1P30838 453 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 PDE4CQ08493 712 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 SPC24Q8NBT2 197 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 PPP1R1BQ9UD71 204 aaPredicted RBP7.55□□□□□ -1.2
VPS13B-202ENST00000357162 SEC16AO15027 2179 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 CCDC102BQ68D86 513 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 MSL1Q68DK7 614 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 ZNF445P59923 1031 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 NOLC1Q14978 699 aaKnown RBP eCLIP7.55□□□□□ -1.2
VPS13B-202ENST00000357162 ZSCAN23Q3MJ62 389 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 MYRIPQ8NFW9 859 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 UBAC1Q9BSL1 405 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 ZFYVE9O95405 1425 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 ZFYP08048 801 aaPredicted RBP7.55□□□□□ -1.2
VPS13B-202ENST00000357162 MAP3K9P80192 1104 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 GBP6Q6ZN66 633 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 TSKSQ9UJT2 592 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 HSF2BPO75031 334 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 TSNAXIP1Q2TAA8 658 aa7.55□□□□□ -1.2
VPS13B-202ENST00000357162 TTC31Q49AM3 519 aaPredicted RBP7.55□□□□□ -1.2
VPS13B-202ENST00000357162 CCDC9Q9Y3X0 531 aaKnown RBP7.55□□□□□ -1.2
VPS13B-202ENST00000357162 LUC7L3O95232 432 aaKnown RBP7.54□□□□□ -1.2
VPS13B-202ENST00000357162 TMTC2Q8N394 836 aa7.54□□□□□ -1.2
VPS13B-202ENST00000357162 C16orf45Q96MC5 204 aaPredicted RBP7.54□□□□□ -1.2
VPS13B-202ENST00000357162 KIAA0586Q9BVV6 1533 aa7.54□□□□□ -1.2
VPS13B-202ENST00000357162 CTTNBP2Q8WZ74 1663 aa7.54□□□□□ -1.2
VPS13B-202ENST00000357162 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.54□□□□□ -1.26e-7■■■■□ 20.3
VPS13B-202ENST00000357162 MPHOSPH8Q99549 860 aa7.54□□□□□ -1.2
VPS13B-202ENST00000357162 TMCO5BA8MYB1 307 aa7.54□□□□□ -1.2
VPS13B-202ENST00000357162 ARID4AP29374 1257 aaPredicted RBP7.54□□□□□ -1.2
VPS13B-202ENST00000357162 PIBF1Q8WXW3 757 aa7.54□□□□□ -1.2
VPS13B-202ENST00000357162 GIGYF1O75420 1035 aaPredicted RBP7.54□□□□□ -1.2
VPS13B-202ENST00000357162 KIF4AO95239 1232 aa7.54□□□□□ -1.2
VPS13B-202ENST00000357162 TCHHQ07283 1943 aa7.54□□□□□ -1.2
VPS13B-202ENST00000357162 SKILP12757 684 aa7.54□□□□□ -1.2
VPS13B-202ENST00000357162 CYLC1P35663 651 aaPredicted RBP7.54□□□□□ -1.2
VPS13B-202ENST00000357162 BRAPQ7Z569 592 aa7.54□□□□□ -1.2
VPS13B-202ENST00000357162 NOB1Q9ULX3 412 aaKnown RBP7.54□□□□□ -1.2
VPS13B-202ENST00000357162 CACNA1CQ13936 2221 aa7.54□□□□□ -1.2
VPS13B-202ENST00000357162 NFE2L2Q16236 605 aa7.54□□□□□ -1.2
VPS13B-202ENST00000357162 CCDC155Q8N6L0 562 aa7.54□□□□□ -1.2
VPS13B-202ENST00000357162 ZNF500O60304 480 aaPredicted RBP7.53□□□□□ -1.2
VPS13B-202ENST00000357162 EVI5LQ96CN4 794 aa7.53□□□□□ -1.2
VPS13B-202ENST00000357162 TRAK1Q9UPV9 953 aa7.53□□□□□ -1.2
VPS13B-202ENST00000357162 TTF1Q15361 905 aaPredicted RBP7.53□□□□□ -1.2
VPS13B-202ENST00000357162 KRT86O43790 486 aa7.53□□□□□ -1.2
VPS13B-202ENST00000357162 RNF123Q5XPI4 1314 aa7.53□□□□□ -1.2
VPS13B-202ENST00000357162 ATP2A1O14983 1001 aa7.53□□□□□ -1.2
VPS13B-202ENST00000357162 NUCB1Q02818 461 aa7.53□□□□□ -1.2
VPS13B-202ENST00000357162 WASHC4Q2M389 1173 aa7.53□□□□□ -1.2
VPS13B-202ENST00000357162 RBM26Q5T8P6 1007 aaKnown RBP7.53□□□□□ -1.2
VPS13B-202ENST00000357162 FAM76AQ8TAV0 307 aa7.53□□□□□ -1.2
VPS13B-202ENST00000357162 ANKRD36BQ8N2N9 1353 aa7.53□□□□□ -1.2
VPS13B-202ENST00000357162 PRRC2BQ5JSZ5 2229 aaKnown RBP7.53□□□□□ -1.2
VPS13B-202ENST00000357162 LMAN1P49257 510 aa7.53□□□□□ -1.2
VPS13B-202ENST00000357162 HDGFL1Q5TGJ6 251 aa7.53□□□□□ -1.2
VPS13B-202ENST00000357162 STRN4Q9NRL3 753 aa7.53□□□□□ -1.2
VPS13B-202ENST00000357162 FAM114A2Q9NRY5 505 aa7.53□□□□□ -1.2
VPS13B-202ENST00000357162 SLC8A1P32418 973 aa7.53□□□□□ -1.2
VPS13B-202ENST00000357162 NUTM2DQ5VT03 806 aaPredicted RBP7.53□□□□□ -1.2
VPS13B-202ENST00000357162 NUTM2AQ8IVF1 878 aaPredicted RBP7.53□□□□□ -1.2
VPS13B-202ENST00000357162 RAPGEF4Q8WZA2 1011 aa7.53□□□□□ -1.2
VPS13B-202ENST00000357162 FAM184BQ9ULE4 1060 aa7.53□□□□□ -1.2
VPS13B-202ENST00000357162 CFAP65Q6ZU64 1925 aaKnown RBP7.53□□□□□ -1.2
VPS13B-202ENST00000357162 RBM10P98175 930 aaKnown RBP7.53□□□□□ -1.2
VPS13B-202ENST00000357162 SELENOOQ9BVL4 669 aa7.53□□□□□ -1.2
VPS13B-202ENST00000357162 ARHGAP24Q8N264 748 aa7.53□□□□□ -1.2
VPS13B-202ENST00000357162 POLR3AO14802 1390 aaPredicted RBP7.53□□□□□ -1.2
VPS13B-202ENST00000357162 PATL2C9JE40 543 aaKnown RBP7.53□□□□□ -1.2
VPS13B-202ENST00000357162 TACC1O75410 805 aa7.53□□□□□ -1.2
VPS13B-202ENST00000357162 PPP2R5BQ15173 497 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms