RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 UQCRHP07919 91 aa20.88■□□□□ 0.93
COL18A1-202ENST00000355480 PDE4BQ07343 736 aa20.88■□□□□ 0.93
COL18A1-202ENST00000355480 CCDC12Q8WUD4 166 aaPredicted RBP20.88■□□□□ 0.93
COL18A1-202ENST00000355480 UBXN4Q92575 508 aa20.88■□□□□ 0.93
COL18A1-202ENST00000355480 TMEM67Q5HYA8 995 aa20.88■□□□□ 0.93
COL18A1-202ENST00000355480 CCDC144CPQ8IYA2 1237 aa20.88■□□□□ 0.93
COL18A1-202ENST00000355480 KIF5BP33176 963 aa20.88■□□□□ 0.93
COL18A1-202ENST00000355480 SLC4A8Q2Y0W8 1093 aa20.88■□□□□ 0.93
COL18A1-202ENST00000355480 PLEKHH1Q9ULM0 1364 aa20.88■□□□□ 0.93
COL18A1-202ENST00000355480 TOP1P11387 765 aaKnown RBP20.88■□□□□ 0.93
COL18A1-202ENST00000355480 LARP6Q9BRS8 491 aaKnown RBP20.88■□□□□ 0.93
COL18A1-202ENST00000355480 DMRT2Q9Y5R5 561 aa20.87■□□□□ 0.93
COL18A1-202ENST00000355480 ZSCAN12O43309 604 aa20.87■□□□□ 0.93
COL18A1-202ENST00000355480 TRIM27P14373 513 aa20.87■□□□□ 0.93
COL18A1-202ENST00000355480 KAT14Q9H8E8 782 aa20.87■□□□□ 0.93
COL18A1-202ENST00000355480 HLA-DOAP06340 250 aa20.87■□□□□ 0.93
COL18A1-202ENST00000355480 SPTY2D1Q68D10 685 aaPredicted RBP20.86■□□□□ 0.93
COL18A1-202ENST00000355480 PLB1Q6P1J6 1458 aa20.86■□□□□ 0.93
COL18A1-202ENST00000355480 PI4KAP2A4QPH2 592 aa20.86■□□□□ 0.93
COL18A1-202ENST00000355480 PI4KAP1Q8N8J0 262 aa20.86■□□□□ 0.93
COL18A1-202ENST00000355480 KIF14Q15058 1648 aa20.86■□□□□ 0.93
COL18A1-202ENST00000355480 SNRPA1P09661 255 aaKnown RBP20.86■□□□□ 0.93
COL18A1-202ENST00000355480 HAND2P61296 217 aa20.86■□□□□ 0.93
COL18A1-202ENST00000355480 USP16Q9Y5T5 823 aa20.86■□□□□ 0.93
COL18A1-202ENST00000355480 IARSP41252 1262 aaKnown RBP20.86■□□□□ 0.93
COL18A1-202ENST00000355480 NOS1P29475 1434 aa20.86■□□□□ 0.93
COL18A1-202ENST00000355480 KIF5CO60282 957 aa20.85■□□□□ 0.93
COL18A1-202ENST00000355480 TDRD12Q587J7 1177 aaKnown RBP20.85■□□□□ 0.93
COL18A1-202ENST00000355480 CALML4Q96GE6 196 aa20.85■□□□□ 0.93
COL18A1-202ENST00000355480 MFSD6Q6ZSS7 791 aa20.85■□□□□ 0.93
COL18A1-202ENST00000355480 TCP11L1Q9NUJ3 509 aa20.85■□□□□ 0.93
COL18A1-202ENST00000355480 ST5P78524 1137 aa20.85■□□□□ 0.93
COL18A1-202ENST00000355480 NUP88Q99567 741 aaPredicted RBP20.85■□□□□ 0.93
COL18A1-202ENST00000355480 PIK3R4Q99570 1358 aa20.85■□□□□ 0.93
COL18A1-202ENST00000355480 ACEP12821 1306 aa20.85■□□□□ 0.93
COL18A1-202ENST00000355480 NBPF6Q5VWK0 638 aa20.85■□□□□ 0.93
COL18A1-202ENST00000355480 CADPS2Q86UW7 1296 aa20.85■□□□□ 0.93
COL18A1-202ENST00000355480 NBPF5PQ86XG9 351 aaPredicted RBP20.85■□□□□ 0.93
COL18A1-202ENST00000355480 TMEM87AQ8NBN3 555 aa20.85■□□□□ 0.93
COL18A1-202ENST00000355480 JARID2Q92833 1246 aaPredicted RBP20.85■□□□□ 0.93
COL18A1-202ENST00000355480 NBPF4Q96M43 638 aa20.85■□□□□ 0.93
COL18A1-202ENST00000355480 FSIP1Q8NA03 581 aa20.85■□□□□ 0.93
COL18A1-202ENST00000355480 FAM83GA6ND36 823 aa20.84■□□□□ 0.93
COL18A1-202ENST00000355480 DNA2P51530 1060 aa20.84■□□□□ 0.93
COL18A1-202ENST00000355480 IDEP14735 1019 aa20.84■□□□□ 0.93
COL18A1-202ENST00000355480 CCDC178Q5BJE1 867 aa20.84■□□□□ 0.93
COL18A1-202ENST00000355480 MICU3Q86XE3 530 aa20.84■□□□□ 0.93
COL18A1-202ENST00000355480 CTAGE5O15320 804 aa20.84■□□□□ 0.93
COL18A1-202ENST00000355480 CRACR2AQ9BSW2 395 aa20.84■□□□□ 0.93
COL18A1-202ENST00000355480 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.84■□□□□ 0.935e-6■■■□□ 16.4
COL18A1-202ENST00000355480 ABCC5O15440 1437 aa20.84■□□□□ 0.93
COL18A1-202ENST00000355480 MACROD2A1Z1Q3 448 aa20.83■□□□□ 0.93
COL18A1-202ENST00000355480 PTPN14Q15678 1187 aa20.83■□□□□ 0.93
COL18A1-202ENST00000355480 DHX37Q8IY37 1157 aaKnown RBP20.83■□□□□ 0.93
COL18A1-202ENST00000355480 CPLX3Q8WVH0 158 aa20.83■□□□□ 0.93
COL18A1-202ENST00000355480 CTNNBL1Q8WYA6 563 aaPredicted RBP20.83■□□□□ 0.93
COL18A1-202ENST00000355480 CKAP2LQ8IYA6 745 aa20.83■□□□□ 0.93
COL18A1-202ENST00000355480 MBIPQ9NS73 344 aa20.83■□□□□ 0.93
COL18A1-202ENST00000355480 HMGXB3Q12766 1538 aa20.83■□□□□ 0.93
COL18A1-202ENST00000355480 CETN1Q12798 172 aa20.83■□□□□ 0.92
COL18A1-202ENST00000355480 CCDC113Q9H0I3 377 aa20.83■□□□□ 0.92
COL18A1-202ENST00000355480 KIF4BQ2VIQ3 1234 aa20.83■□□□□ 0.92
COL18A1-202ENST00000355480 SAMM50Q9Y512 469 aa20.83■□□□□ 0.92
COL18A1-202ENST00000355480 PRKCSHP14314 528 aaPredicted RBP20.82■□□□□ 0.92
COL18A1-202ENST00000355480 MTIF2P46199 727 aaKnown RBP20.82■□□□□ 0.92
COL18A1-202ENST00000355480 AMPD3Q01432 767 aa20.82■□□□□ 0.92
COL18A1-202ENST00000355480 LUZP1Q86V48 1076 aa20.82■□□□□ 0.92
COL18A1-202ENST00000355480 KIF2AO00139 706 aaPredicted RBP20.82■□□□□ 0.92
COL18A1-202ENST00000355480 MYO1BO43795 1136 aa20.82■□□□□ 0.92
COL18A1-202ENST00000355480 CCDC152Q4G0S7 254 aa20.82■□□□□ 0.92
COL18A1-202ENST00000355480 TCERG1LQ5VWI1 586 aa20.82■□□□□ 0.92
COL18A1-202ENST00000355480 GSTTP1A0A1W2PQM5 241 aa20.82■□□□□ 0.92
COL18A1-202ENST00000355480 NSD2O96028 1365 aa20.82■□□□□ 0.92
COL18A1-202ENST00000355480 ESPNB1AK53 854 aa20.82■□□□□ 0.92
COL18A1-202ENST00000355480 GJB2P29033 226 aa20.82■□□□□ 0.92
COL18A1-202ENST00000355480 GBP3Q9H0R5 595 aa20.82■□□□□ 0.92
COL18A1-202ENST00000355480 CASQ1P31415 396 aa20.82■□□□□ 0.92
COL18A1-202ENST00000355480 METAP2P50579 478 aaKnown RBP eCLIP20.82■□□□□ 0.927e-7■□□□□ 10.6
COL18A1-202ENST00000355480 RAB11FIP4Q86YS3 637 aa20.82■□□□□ 0.92
COL18A1-202ENST00000355480 NCOA7Q8NI08 942 aa20.82■□□□□ 0.92
COL18A1-202ENST00000355480 ANXA1P04083 346 aa20.81■□□□□ 0.92
COL18A1-202ENST00000355480 SPDYE4A6NLX3 237 aa20.81■□□□□ 0.92
COL18A1-202ENST00000355480 USO1O60763 962 aaKnown RBP20.81■□□□□ 0.92
COL18A1-202ENST00000355480 YEATS4O95619 227 aa20.81■□□□□ 0.92
COL18A1-202ENST00000355480 ANKRD13DQ6ZTN6 518 aa20.81■□□□□ 0.92
COL18A1-202ENST00000355480 SKAP1Q86WV1 359 aa20.81■□□□□ 0.92
COL18A1-202ENST00000355480 DYDC1Q8WWB3 177 aa20.81■□□□□ 0.92
COL18A1-202ENST00000355480 CRNKL1Q9BZJ0 848 aaKnown RBP20.81■□□□□ 0.92
COL18A1-202ENST00000355480 CLIP2Q9UDT6 1046 aa20.81■□□□□ 0.92
COL18A1-202ENST00000355480 CCDC40Q4G0X9 1142 aa20.81■□□□□ 0.92
COL18A1-202ENST00000355480 CCDC91Q7Z6B0 441 aa20.81■□□□□ 0.92
COL18A1-202ENST00000355480 ORC3Q9UBD5 711 aaPredicted RBP20.81■□□□□ 0.92
COL18A1-202ENST00000355480 UQCRFS1P1P0C7P4 283 aa20.8■□□□□ 0.92
COL18A1-202ENST00000355480 PPM1FP49593 454 aaPredicted RBP20.8■□□□□ 0.92
COL18A1-202ENST00000355480 NCOA1Q15788 1441 aa20.8■□□□□ 0.92
COL18A1-202ENST00000355480 NEK1Q96PY6 1258 aa20.8■□□□□ 0.92
COL18A1-202ENST00000355480 C11orf95C9JLR9 678 aaPredicted RBP20.8■□□□□ 0.92
COL18A1-202ENST00000355480 GSTO1P78417 241 aa20.8■□□□□ 0.92
COL18A1-202ENST00000355480 SLC26A6Q9BXS9 759 aa20.8■□□□□ 0.92
COL18A1-202ENST00000355480 TFIP11Q9UBB9 837 aaKnown RBP20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 178.1 ms