RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 KNSTRNQ9Y448 316 aa10.93□□□□□ -0.66
CD44-205ENST00000352818 A0A1W2PP64 1363 aa10.92□□□□□ -0.66
CD44-205ENST00000352818 H0YIN7 160 aa10.92□□□□□ -0.66
CD44-205ENST00000352818 HSP90AB2PQ58FF8 381 aa10.92□□□□□ -0.66
CD44-205ENST00000352818 USPL1Q5W0Q7 1092 aa10.92□□□□□ -0.66
CD44-205ENST00000352818 PNMA8AQ86V59 439 aaPredicted RBP10.92□□□□□ -0.66
CD44-205ENST00000352818 HPS5Q9UPZ3 1129 aa10.92□□□□□ -0.66
CD44-205ENST00000352818 NCAPD2Q15021 1401 aa10.92□□□□□ -0.66
CD44-205ENST00000352818 TRIOBPQ9H2D6 2365 aa10.91□□□□□ -0.66
CD44-205ENST00000352818 AFDNP55196 1824 aaKnown RBP10.91□□□□□ -0.66
CD44-205ENST00000352818 SERPINB2P05120 415 aa10.91□□□□□ -0.66
CD44-205ENST00000352818 NEFLP07196 543 aa10.91□□□□□ -0.66
CD44-205ENST00000352818 PHKG2P15735 406 aa10.91□□□□□ -0.66
CD44-205ENST00000352818 HTTP42858 3142 aa10.9□□□□□ -0.66
CD44-205ENST00000352818 CC2D1BQ5T0F9 858 aaKnown RBP10.9□□□□□ -0.66
CD44-205ENST00000352818 SLC17A8Q8NDX2 589 aa10.9□□□□□ -0.66
CD44-205ENST00000352818 ERICH6BQ5W0A0 696 aa10.89□□□□□ -0.67
CD44-205ENST00000352818 C7orf43Q8WVR3 580 aa10.89□□□□□ -0.67
CD44-205ENST00000352818 ZNF622Q969S3 477 aaKnown RBP eCLIP10.89□□□□□ -0.67
CD44-205ENST00000352818 ANKRD26Q9UPS8 1709 aa10.89□□□□□ -0.67
CD44-205ENST00000352818 PITPNM2Q9BZ72 1349 aa10.88□□□□□ -0.67
CD44-205ENST00000352818 CCDC24Q8N4L8 307 aa10.88□□□□□ -0.67
CD44-205ENST00000352818 HHIPL1Q96JK4 782 aa10.88□□□□□ -0.67
CD44-205ENST00000352818 SOS1Q07889 1333 aaPredicted RBP10.87□□□□□ -0.67
CD44-205ENST00000352818 COL11A2P13942 1736 aaPredicted RBP10.87□□□□□ -0.67
CD44-205ENST00000352818 FZD9O00144 591 aa10.87□□□□□ -0.67
CD44-205ENST00000352818 PPP2R1AP30153 589 aa10.87□□□□□ -0.67
CD44-205ENST00000352818 HDGFL2Q7Z4V5 671 aaPredicted RBP10.87□□□□□ -0.67
CD44-205ENST00000352818 CTU1Q7Z7A3 348 aaKnown RBP10.87□□□□□ -0.67
CD44-205ENST00000352818 COG3Q96JB2 828 aa10.87□□□□□ -0.67
CD44-205ENST00000352818 ZNF277Q9NRM2 450 aaPredicted RBP10.87□□□□□ -0.67
CD44-205ENST00000352818 COLQQ9Y215 455 aaPredicted RBP10.87□□□□□ -0.67
CD44-205ENST00000352818 PTCD1O75127 700 aaKnown RBP10.86□□□□□ -0.67
CD44-205ENST00000352818 EPS15P42566 896 aa10.86□□□□□ -0.67
CD44-205ENST00000352818 PRPF40BQ6NWY9 871 aaKnown RBP10.86□□□□□ -0.67
CD44-205ENST00000352818 SPG7Q9UQ90 795 aa10.86□□□□□ -0.67
CD44-205ENST00000352818 NUDCQ9Y266 331 aa10.86□□□□□ -0.67
CD44-205ENST00000352818 ANKRD31Q8N7Z5 1873 aa10.86□□□□□ -0.67
CD44-205ENST00000352818 SLX4Q8IY92 1834 aa10.86□□□□□ -0.67
CD44-205ENST00000352818 FAM155AB1AL88 458 aaPredicted RBP10.85□□□□□ -0.67
CD44-205ENST00000352818 ZPR1O75312 459 aa10.85□□□□□ -0.67
CD44-205ENST00000352818 CELF2O95319 508 aaKnown RBP10.85□□□□□ -0.67
CD44-205ENST00000352818 SCNN1DP51172 638 aa10.85□□□□□ -0.67
CD44-205ENST00000352818 CNGB1Q14028 1251 aaPredicted RBP10.85□□□□□ -0.67
CD44-205ENST00000352818 OLFM4Q6UX06 510 aa10.85□□□□□ -0.67
CD44-205ENST00000352818 IFNL2Q8IZJ0 200 aa10.85□□□□□ -0.67
CD44-205ENST00000352818 CARD14Q9BXL6 1004 aa10.85□□□□□ -0.67
CD44-205ENST00000352818 RNF186Q9NXI6 227 aa10.85□□□□□ -0.67
CD44-205ENST00000352818 SAGE1Q9NXZ1 904 aa10.85□□□□□ -0.67
CD44-205ENST00000352818 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.85□□□□□ -0.67
CD44-205ENST00000352818 NARFQ9UHQ1 456 aa10.85□□□□□ -0.67
CD44-205ENST00000352818 VCANP13611 3396 aa10.85□□□□□ -0.67
CD44-205ENST00000352818 LAMA3Q16787 3333 aa10.85□□□□□ -0.67
CD44-205ENST00000352818 CENPFP49454 3210 aa10.84□□□□□ -0.67
CD44-205ENST00000352818 UNC80Q8N2C7 3258 aa10.84□□□□□ -0.67
CD44-205ENST00000352818 NOGQ13253 232 aa10.84□□□□□ -0.67
CD44-205ENST00000352818 GPC2Q8N158 579 aa10.84□□□□□ -0.67
CD44-205ENST00000352818 BRIP1Q9BX63 1249 aa10.84□□□□□ -0.67
CD44-205ENST00000352818 COL4A5P29400 1685 aa10.84□□□□□ -0.67
CD44-205ENST00000352818 TJP1Q07157 1748 aa10.84□□□□□ -0.67
CD44-205ENST00000352818 ERVV-2B6SEH9 535 aa10.83□□□□□ -0.68
CD44-205ENST00000352818 KIF20BQ96Q89 1820 aa10.83□□□□□ -0.68
CD44-205ENST00000352818 CEP290O15078 2479 aa10.83□□□□□ -0.68
CD44-205ENST00000352818 SPTBN5Q9NRC6 3674 aaKnown RBP10.82□□□□□ -0.68
CD44-205ENST00000352818 TRPA1O75762 1119 aa10.82□□□□□ -0.68
CD44-205ENST00000352818 PRR5LQ6MZQ0 368 aa10.82□□□□□ -0.68
CD44-205ENST00000352818 BICDL1Q6ZP65 573 aa10.82□□□□□ -0.68
CD44-205ENST00000352818 GLIS2Q9BZE0 524 aaPredicted RBP10.82□□□□□ -0.68
CD44-205ENST00000352818 TERF2IPQ9NYB0 399 aa10.82□□□□□ -0.68
CD44-205ENST00000352818 TRPM7Q96QT4 1865 aa10.82□□□□□ -0.68
CD44-205ENST00000352818 FLT4P35916 1363 aa10.81□□□□□ -0.68
CD44-205ENST00000352818 SRGNP10124 158 aa10.81□□□□□ -0.68
CD44-205ENST00000352818 PDE6BP35913 854 aa10.81□□□□□ -0.68
CD44-205ENST00000352818 FKBP4Q02790 459 aaKnown RBP eCLIP10.81□□□□□ -0.68
CD44-205ENST00000352818 STYK1Q6J9G0 422 aa10.81□□□□□ -0.68
CD44-205ENST00000352818 DNAJC10Q8IXB1 793 aa10.81□□□□□ -0.68
CD44-205ENST00000352818 SYNE4Q8N205 404 aa10.81□□□□□ -0.68
CD44-205ENST00000352818 POTEFA5A3E0 1075 aa10.8□□□□□ -0.68
CD44-205ENST00000352818 KIF23Q02241 960 aaPredicted RBP10.8□□□□□ -0.68
CD44-205ENST00000352818 TBC1D9BQ66K14 1250 aa10.8□□□□□ -0.68
CD44-205ENST00000352818 DLK2Q6UY11 383 aa10.8□□□□□ -0.68
CD44-205ENST00000352818 CNKSR1Q969H4 720 aa10.8□□□□□ -0.68
CD44-205ENST00000352818 EYA1Q99502 592 aa10.8□□□□□ -0.68
CD44-205ENST00000352818 SNED1Q8TER0 1413 aa10.8□□□□□ -0.68
CD44-205ENST00000352818 SCN11AQ9UI33 1791 aa10.8□□□□□ -0.68
CD44-205ENST00000352818 COL15A1P39059 1388 aa10.79□□□□□ -0.68
CD44-205ENST00000352818 FYB1O15117 783 aa10.79□□□□□ -0.68
CD44-205ENST00000352818 CYP19A1P11511 503 aaPredicted RBP10.79□□□□□ -0.68
CD44-205ENST00000352818 WDR43Q15061 677 aaKnown RBP eCLIP10.79□□□□□ -0.68
CD44-205ENST00000352818 CCDC93Q567U6 631 aa10.79□□□□□ -0.68
CD44-205ENST00000352818 AKAP4Q5JQC9 854 aa10.79□□□□□ -0.68
CD44-205ENST00000352818 SOGA3Q5TF21 947 aa10.79□□□□□ -0.68
CD44-205ENST00000352818 USP50Q70EL3 339 aaPredicted RBP10.79□□□□□ -0.68
CD44-205ENST00000352818 OTUD5Q96G74 571 aa10.79□□□□□ -0.68
CD44-205ENST00000352818 GGNBP2Q9H3C7 697 aa10.79□□□□□ -0.68
CD44-205ENST00000352818 PDZRN3Q9UPQ7 1066 aa10.79□□□□□ -0.68
CD44-205ENST00000352818 ZBTB1Q9Y2K1 713 aa10.79□□□□□ -0.68
CD44-205ENST00000352818 CACNA1SQ13698 1873 aa10.78□□□□□ -0.68
CD44-205ENST00000352818 IARSP41252 1262 aaKnown RBP10.78□□□□□ -0.68
CD44-205ENST00000352818 MNX1P50219 401 aaPredicted RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms