RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 FOSBP53539 338 aa11.92□□□□□ -0.5
CCDC88A-202ENST00000336838 LRRC27Q9C0I9 530 aa11.92□□□□□ -0.5
CCDC88A-202ENST00000336838 AIDAQ96BJ3 306 aa11.92□□□□□ -0.5
CCDC88A-202ENST00000336838 TRAPPC8Q9Y2L5 1435 aa11.92□□□□□ -0.5
CCDC88A-202ENST00000336838 ZFYP08048 801 aaPredicted RBP11.92□□□□□ -0.5
CCDC88A-202ENST00000336838 BABAM1Q9NWV8 329 aa11.92□□□□□ -0.5
CCDC88A-202ENST00000336838 CETN2P41208 172 aa11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 WASLO00401 505 aaPredicted RBP11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 MYO1BO43795 1136 aa11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 CEBPZQ03701 1054 aaKnown RBP11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 CCDC102AQ96A19 550 aa11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 CKAP4Q07065 602 aaKnown RBP11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 FLIIQ13045 1269 aa11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 RMND1Q9NWS8 449 aa11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 TRPM2O94759 1503 aa11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 A0A087WZG4 1122 aa11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 A6NNZ2 444 aa11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 ZNF165P49910 485 aa11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 TUBB8Q3ZCM7 444 aa11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 SSFA2P28290 1259 aa11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 EIF5P55010 431 aaKnown RBP11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 TSG101Q99816 390 aa11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 STARD3NLO95772 234 aa11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 TDO2P48775 406 aa11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 DNAI2Q9GZS0 605 aa11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 SNW1Q13573 536 aaKnown RBP11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 SEPT7Q16181 437 aaKnown RBP11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 SPAG1Q07617 926 aa11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 CTR9Q6PD62 1173 aa11.91□□□□□ -0.5
CCDC88A-202ENST00000336838 TUBB2AQ13885 445 aa11.9□□□□□ -0.5
CCDC88A-202ENST00000336838 TUBB2BQ9BVA1 445 aa11.9□□□□□ -0.5
CCDC88A-202ENST00000336838 SSH2Q76I76 1423 aa11.9□□□□□ -0.5
CCDC88A-202ENST00000336838 ANKRD44Q8N8A2 993 aa11.9□□□□□ -0.5
CCDC88A-202ENST00000336838 TAOK3Q9H2K8 898 aa11.9□□□□□ -0.5
CCDC88A-202ENST00000336838 EXOC6BQ9Y2D4 811 aa11.9□□□□□ -0.5
CCDC88A-202ENST00000336838 POTEJP0CG39 1038 aa11.9□□□□□ -0.5
CCDC88A-202ENST00000336838 AMPD3Q01432 767 aa11.9□□□□□ -0.5
CCDC88A-202ENST00000336838 PRPF40BQ6NWY9 871 aaKnown RBP11.9□□□□□ -0.5
CCDC88A-202ENST00000336838 ZNF652Q9Y2D9 606 aa11.9□□□□□ -0.5
CCDC88A-202ENST00000336838 SPHKAPQ2M3C7 1700 aa11.9□□□□□ -0.5
CCDC88A-202ENST00000336838 CDC42BPAQ5VT25 1732 aa11.9□□□□□ -0.5
CCDC88A-202ENST00000336838 NPHP3Q7Z494 1330 aa11.9□□□□□ -0.5
CCDC88A-202ENST00000336838 FMNL3Q8IVF7 1028 aa11.9□□□□□ -0.51
CCDC88A-202ENST00000336838 ANKRD24Q8TF21 1146 aa11.9□□□□□ -0.51
CCDC88A-202ENST00000336838 TET3O43151 1660 aa11.9□□□□□ -0.51
CCDC88A-202ENST00000336838 IFI16Q16666 785 aaKnown RBP11.89□□□□□ -0.51
CCDC88A-202ENST00000336838 PPP4R3BQ5MIZ7 849 aa11.89□□□□□ -0.51
CCDC88A-202ENST00000336838 CEP135Q66GS9 1140 aa11.89□□□□□ -0.51
CCDC88A-202ENST00000336838 BRPF1P55201 1214 aaPredicted RBP11.89□□□□□ -0.51
CCDC88A-202ENST00000336838 STK3Q13188 491 aa11.89□□□□□ -0.51
CCDC88A-202ENST00000336838 SEC63Q9UGP8 760 aaKnown RBP11.89□□□□□ -0.51
CCDC88A-202ENST00000336838 CCDC178Q5BJE1 867 aa11.89□□□□□ -0.51
CCDC88A-202ENST00000336838 TEX13AQ9BXU3 409 aaPredicted RBP11.89□□□□□ -0.51
CCDC88A-202ENST00000336838 TIGD1Q96MW7 591 aa11.89□□□□□ -0.51
CCDC88A-202ENST00000336838 RBM27Q9P2N5 1060 aaKnown RBP11.89□□□□□ -0.51
CCDC88A-202ENST00000336838 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.89□□□□□ -0.515e-7■■□□□ 13.2
CCDC88A-202ENST00000336838 GCOM1H8Y6P7 765 aaPredicted RBP11.89□□□□□ -0.51
CCDC88A-202ENST00000336838 MYZAPP0CAP1 466 aa11.89□□□□□ -0.51
CCDC88A-202ENST00000336838 KIF5BP33176 963 aa11.89□□□□□ -0.51
CCDC88A-202ENST00000336838 ESCO1Q5FWF5 840 aa11.89□□□□□ -0.51
CCDC88A-202ENST00000336838 TMTC2Q8N394 836 aa11.89□□□□□ -0.51
CCDC88A-202ENST00000336838 SBNO2Q9Y2G9 1366 aa11.89□□□□□ -0.51
CCDC88A-202ENST00000336838 LAMC1P11047 1609 aa11.88□□□□□ -0.51
CCDC88A-202ENST00000336838 XRCC6P12956 609 aaKnown RBP eCLIP11.88□□□□□ -0.51
CCDC88A-202ENST00000336838 TRIM21P19474 475 aaKnown RBP11.88□□□□□ -0.51
CCDC88A-202ENST00000336838 MAP3K12Q12852 859 aa11.88□□□□□ -0.51
CCDC88A-202ENST00000336838 CCDC94Q9BW85 323 aaPredicted RBP11.88□□□□□ -0.51
CCDC88A-202ENST00000336838 PAFAH1B1P43034 410 aa11.88□□□□□ -0.51
CCDC88A-202ENST00000336838 TTLL5Q6EMB2 1281 aa11.88□□□□□ -0.51
CCDC88A-202ENST00000336838 IGHMBP2P38935 993 aaKnown RBP11.88□□□□□ -0.51
CCDC88A-202ENST00000336838 PIP4K2BP78356 416 aa11.88□□□□□ -0.51
CCDC88A-202ENST00000336838 LRRFIP2Q9Y608 721 aaKnown RBP11.88□□□□□ -0.51
CCDC88A-202ENST00000336838 ANKLE2Q86XL3 938 aa11.88□□□□□ -0.51
CCDC88A-202ENST00000336838 ARFGAP3Q9NP61 516 aa11.88□□□□□ -0.51
CCDC88A-202ENST00000336838 CDC42BPBQ9Y5S2 1711 aa11.88□□□□□ -0.51
CCDC88A-202ENST00000336838 AK9Q5TCS8 1911 aa11.88□□□□□ -0.51
CCDC88A-202ENST00000336838 GJB2P29033 226 aa11.88□□□□□ -0.51
CCDC88A-202ENST00000336838 CEP170Q5SW79 1584 aa11.88□□□□□ -0.51
CCDC88A-202ENST00000336838 FKBP4Q02790 459 aaKnown RBP eCLIP11.87□□□□□ -0.51
CCDC88A-202ENST00000336838 TMEM266Q2M3C6 531 aa11.87□□□□□ -0.51
CCDC88A-202ENST00000336838 SLF2Q8IX21 1173 aa11.87□□□□□ -0.51
CCDC88A-202ENST00000336838 SLC12A7Q9Y666 1083 aa11.87□□□□□ -0.51
CCDC88A-202ENST00000336838 ALDH1L1O75891 902 aa11.87□□□□□ -0.51
CCDC88A-202ENST00000336838 IQCA1Q86XH1 822 aa11.87□□□□□ -0.51
CCDC88A-202ENST00000336838 BBXQ8WY36 941 aaPredicted RBP11.87□□□□□ -0.51
CCDC88A-202ENST00000336838 CCDC91Q7Z6B0 441 aa11.87□□□□□ -0.51
CCDC88A-202ENST00000336838 IQGAP3Q86VI3 1631 aa11.87□□□□□ -0.51
CCDC88A-202ENST00000336838 PRDM15P57071 1507 aaPredicted RBP11.87□□□□□ -0.51
CCDC88A-202ENST00000336838 CCDC172P0C7W6 258 aa11.87□□□□□ -0.51
CCDC88A-202ENST00000336838 CNNM2Q9H8M5 875 aa11.87□□□□□ -0.51
CCDC88A-202ENST00000336838 C16orf45Q96MC5 204 aaPredicted RBP11.87□□□□□ -0.51
CCDC88A-202ENST00000336838 MBIPQ9NS73 344 aa11.87□□□□□ -0.51
CCDC88A-202ENST00000336838 SSRP1Q08945 709 aaKnown RBP11.86□□□□□ -0.51
CCDC88A-202ENST00000336838 CCDC102BQ68D86 513 aa11.86□□□□□ -0.51
CCDC88A-202ENST00000336838 CEP112Q8N8E3 955 aa11.86□□□□□ -0.51
CCDC88A-202ENST00000336838 CTCFLQ8NI51 663 aaPredicted RBP11.86□□□□□ -0.51
CCDC88A-202ENST00000336838 CNNM3Q8NE01 707 aa11.86□□□□□ -0.51
CCDC88A-202ENST00000336838 RRS1Q15050 365 aaKnown RBP11.86□□□□□ -0.51
CCDC88A-202ENST00000336838 SYTL4Q96C24 671 aaPredicted RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms