RNA–Protein interactions for RNA: ENST00000334944.9

SF1-202, Transcript of splicing factor 1, humanhuman

TSL 1 (best) BASIC

Gene SF1, Length 3,094 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-202ENST00000334944 GIGYF1O75420 1035 aaPredicted RBP16.8■□□□□ 0.28
SF1-202ENST00000334944 KLHL40Q2TBA0 621 aa16.8■□□□□ 0.28
SF1-202ENST00000334944 C17orf53Q8N3J3 647 aaPredicted RBP16.8■□□□□ 0.28
SF1-202ENST00000334944 ZNF830Q96NB3 372 aaPredicted RBP16.8■□□□□ 0.28
SF1-202ENST00000334944 LARP6Q9BRS8 491 aaKnown RBP16.8■□□□□ 0.28
SF1-202ENST00000334944 C9orf78Q9NZ63 289 aaPredicted RBP16.8■□□□□ 0.28
SF1-202ENST00000334944 BABAM1Q9NWV8 329 aa16.79■□□□□ 0.28
SF1-202ENST00000334944 CSB-PGBD3P0DP91 1061 aa16.79■□□□□ 0.28
SF1-202ENST00000334944 FOXD4L6Q3SYB3 417 aaPredicted RBP16.79■□□□□ 0.28
SF1-202ENST00000334944 FOXD4L3Q6VB84 417 aaPredicted RBP16.79■□□□□ 0.28
SF1-202ENST00000334944 PTMAP06454 111 aaKnown RBP16.78■□□□□ 0.28
SF1-202ENST00000334944 ZNF710Q8N1W2 664 aa16.78■□□□□ 0.28
SF1-202ENST00000334944 UTP14CQ5TAP6 766 aaKnown RBP16.78■□□□□ 0.28
SF1-202ENST00000334944 DBF4Q9UBU7 674 aaPredicted RBP16.78■□□□□ 0.28
SF1-202ENST00000334944 AMOTQ4VCS5 1084 aa16.78■□□□□ 0.28
SF1-202ENST00000334944 MTERF4Q7Z6M4 381 aaKnown RBP16.78■□□□□ 0.28
SF1-202ENST00000334944 NFATC2IPQ8NCF5 419 aa16.77■□□□□ 0.28
SF1-202ENST00000334944 PDIA4P13667 645 aaKnown RBP16.76■□□□□ 0.27
SF1-202ENST00000334944 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.76■□□□□ 0.27
SF1-202ENST00000334944 PRPF40AO75400 957 aaKnown RBP16.76■□□□□ 0.27
SF1-202ENST00000334944 KLHDC4Q8TBB5 520 aa16.76■□□□□ 0.27
SF1-202ENST00000334944 SIL1Q9H173 461 aa16.76■□□□□ 0.27
SF1-202ENST00000334944 POLA2Q14181 598 aa16.76■□□□□ 0.27
SF1-202ENST00000334944 RAPGEF4Q8WZA2 1011 aa16.76■□□□□ 0.27
SF1-202ENST00000334944 ERBB3P21860 1342 aa16.75■□□□□ 0.27
SF1-202ENST00000334944 SYCE3A1L190 88 aa16.75■□□□□ 0.27
SF1-202ENST00000334944 TPRNQ4KMQ1 711 aa16.75■□□□□ 0.27
SF1-202ENST00000334944 CWC27Q6UX04 472 aaKnown RBP16.75■□□□□ 0.27
SF1-202ENST00000334944 SPG7Q9UQ90 795 aa16.75■□□□□ 0.27
SF1-202ENST00000334944 HSPA2P54652 639 aa16.75■□□□□ 0.27
SF1-202ENST00000334944 TMX3Q96JJ7 454 aa16.75■□□□□ 0.27
SF1-202ENST00000334944 C19orf44Q9H6X5 657 aa16.75■□□□□ 0.27
SF1-202ENST00000334944 TMEM51Q9NW97 253 aa16.75■□□□□ 0.27
SF1-202ENST00000334944 CGNQ9P2M7 1197 aaKnown RBP16.75■□□□□ 0.27
SF1-202ENST00000334944 STAP2Q9UGK3 403 aa16.75■□□□□ 0.27
SF1-202ENST00000334944 ATF3P18847 181 aa16.74■□□□□ 0.27
SF1-202ENST00000334944 CSPP1Q1MSJ5 1256 aa16.74■□□□□ 0.27
SF1-202ENST00000334944 PI4K2BQ8TCG2 481 aa16.74■□□□□ 0.27
SF1-202ENST00000334944 PDLIM2Q96JY6 352 aa16.74■□□□□ 0.27
SF1-202ENST00000334944 DDX54Q8TDD1 881 aaKnown RBP16.74■□□□□ 0.27
SF1-202ENST00000334944 KIF1BPQ96EK5 621 aa16.73■□□□□ 0.27
SF1-202ENST00000334944 ZDHHC9Q9Y397 364 aa16.73■□□□□ 0.27
SF1-202ENST00000334944 NSFL1CQ9UNZ2 370 aaKnown RBP16.73■□□□□ 0.27
SF1-202ENST00000334944 KSR2Q6VAB6 950 aa16.73■□□□□ 0.27
SF1-202ENST00000334944 C1orf167Q5SNV9 1468 aa16.72■□□□□ 0.27
SF1-202ENST00000334944 CPA1P15085 419 aa16.72■□□□□ 0.27
SF1-202ENST00000334944 ZNF445P59923 1031 aa16.72■□□□□ 0.27
SF1-202ENST00000334944 HOXB7P09629 217 aa16.72■□□□□ 0.27
SF1-202ENST00000334944 SUCLG2Q96I99 432 aa16.72■□□□□ 0.27
SF1-202ENST00000334944 RIC3Q7Z5B4 369 aa16.71■□□□□ 0.27
SF1-202ENST00000334944 LMBRD1Q9NUN5 540 aa16.71■□□□□ 0.27
SF1-202ENST00000334944 RGPD5Q99666 1765 aa16.71■□□□□ 0.27
SF1-202ENST00000334944 ZNF790Q6PG37 636 aa16.71■□□□□ 0.27
SF1-202ENST00000334944 ZNF496Q96IT1 587 aaPredicted RBP16.71■□□□□ 0.27
SF1-202ENST00000334944 BICC1Q9H694 974 aaKnown RBP16.71■□□□□ 0.27
SF1-202ENST00000334944 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.71■□□□□ 0.278e-9■□□□□ 10.7
SF1-202ENST00000334944 CACNA1FO60840 1977 aa16.71■□□□□ 0.27
SF1-202ENST00000334944 RAB11FIP3O75154 756 aa16.71■□□□□ 0.26
SF1-202ENST00000334944 MCCP23508 829 aa16.71■□□□□ 0.26
SF1-202ENST00000334944 TMEM94Q12767 1356 aa16.71■□□□□ 0.26
SF1-202ENST00000334944 HS1BP3Q53T59 392 aa16.71■□□□□ 0.26
SF1-202ENST00000334944 GPT2Q8TD30 523 aa16.71■□□□□ 0.26
SF1-202ENST00000334944 USP54Q70EL1 1684 aa16.7■□□□□ 0.26
SF1-202ENST00000334944 CCDC8Q9H0W5 538 aaPredicted RBP16.7■□□□□ 0.26
SF1-202ENST00000334944 USP16Q9Y5T5 823 aa16.7■□□□□ 0.26
SF1-202ENST00000334944 PXDNLA1KZ92 1463 aa16.7■□□□□ 0.26
SF1-202ENST00000334944 PDIA6Q15084 440 aa16.7■□□□□ 0.26
SF1-202ENST00000334944 XAGE3Q8WTP9 111 aa16.7■□□□□ 0.26
SF1-202ENST00000334944 KAZALD1Q96I82 304 aa16.7■□□□□ 0.26
SF1-202ENST00000334944 MED1Q15648 1581 aaPredicted RBP16.7■□□□□ 0.26
SF1-202ENST00000334944 COPS6Q7L5N1 327 aa16.69■□□□□ 0.26
SF1-202ENST00000334944 AACSQ86V21 672 aa16.69■□□□□ 0.26
SF1-202ENST00000334944 NUCB2P80303 420 aa16.69■□□□□ 0.26
SF1-202ENST00000334944 RASEFQ8IZ41 740 aa16.69■□□□□ 0.26
SF1-202ENST00000334944 MYRIPQ8NFW9 859 aa16.69■□□□□ 0.26
SF1-202ENST00000334944 TMEM63CQ9P1W3 806 aa16.69■□□□□ 0.26
SF1-202ENST00000334944 CCDC39Q9UFE4 941 aa16.69■□□□□ 0.26
SF1-202ENST00000334944 CCDC9Q9Y3X0 531 aaKnown RBP16.69■□□□□ 0.26
SF1-202ENST00000334944 PTMSP20962 102 aa16.68■□□□□ 0.26
SF1-202ENST00000334944 U2AF2P26368 475 aaKnown RBP eCLIP16.68■□□□□ 0.263e-8■■■■■ 38.7
SF1-202ENST00000334944 CLASRPQ8N2M8 674 aaKnown RBP16.68■□□□□ 0.26
SF1-202ENST00000334944 TLR7Q9NYK1 1049 aaKnown RBP16.68■□□□□ 0.26
SF1-202ENST00000334944 NPHP3Q7Z494 1330 aa16.68■□□□□ 0.26
SF1-202ENST00000334944 GRM8O00222 908 aa16.68■□□□□ 0.26
SF1-202ENST00000334944 IGKV5-2P06315 115 aa16.68■□□□□ 0.26
SF1-202ENST00000334944 TATP17735 454 aaPredicted RBP16.68■□□□□ 0.26
SF1-202ENST00000334944 MYD88Q99836 296 aa16.68■□□□□ 0.26
SF1-202ENST00000334944 CYP2E1P05181 493 aaPredicted RBP16.68■□□□□ 0.26
SF1-202ENST00000334944 IFIT2P09913 472 aaKnown RBP16.68■□□□□ 0.26
SF1-202ENST00000334944 SLC52A2Q9HAB3 445 aa16.68■□□□□ 0.26
SF1-202ENST00000334944 KDM3BQ7LBC6 1761 aa16.68■□□□□ 0.26
SF1-202ENST00000334944 ATP5J2-PTCD1G3V325 749 aa16.67■□□□□ 0.26
SF1-202ENST00000334944 PTCD1O75127 700 aaKnown RBP16.67■□□□□ 0.26
SF1-202ENST00000334944 PHKG2P15735 406 aa16.67■□□□□ 0.26
SF1-202ENST00000334944 KIAA2012Q0VF49 1180 aa16.67■□□□□ 0.26
SF1-202ENST00000334944 DDX21Q9NR30 783 aaKnown RBP eCLIP16.67■□□□□ 0.26
SF1-202ENST00000334944 HYPKQ9NX55 129 aa16.67■□□□□ 0.26
SF1-202ENST00000334944 ZNF142P52746 1687 aaPredicted RBP16.67■□□□□ 0.26
SF1-202ENST00000334944 EPHA10Q5JZY3 1008 aa16.67■□□□□ 0.26
SF1-202ENST00000334944 CNTROBQ8N137 903 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms