RNA–Protein interactions for RNA: ENST00000320876.10

SMCHD1-201, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMCHD1, Length 8,821 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-201ENST00000320876 PTPN23Q9H3S7 1636 aa19.37■□□□□ 0.69
SMCHD1-201ENST00000320876 TTC12Q9H892 705 aaPredicted RBP19.37■□□□□ 0.69
SMCHD1-201ENST00000320876 IL1RAPL2Q9NP60 686 aa19.37■□□□□ 0.69
SMCHD1-201ENST00000320876 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.37■□□□□ 0.696e-7■■□□□ 11.6
SMCHD1-201ENST00000320876 CCDC141Q6ZP82 1450 aa19.37■□□□□ 0.69
SMCHD1-201ENST00000320876 PIP4K2BP78356 416 aa19.37■□□□□ 0.69
SMCHD1-201ENST00000320876 EHMT1Q9H9B1 1298 aa19.37■□□□□ 0.69
SMCHD1-201ENST00000320876 TTC21AQ8NDW8 1320 aa19.37■□□□□ 0.69
SMCHD1-201ENST00000320876 ZSCAN29Q8IWY8 852 aaPredicted RBP19.37■□□□□ 0.69
SMCHD1-201ENST00000320876 KLHL40Q2TBA0 621 aa19.37■□□□□ 0.69
SMCHD1-201ENST00000320876 SSFA2P28290 1259 aa19.36■□□□□ 0.69
SMCHD1-201ENST00000320876 SYNJ2O15056 1496 aa19.36■□□□□ 0.69
SMCHD1-201ENST00000320876 STXBP4Q6ZWJ1 553 aa19.36■□□□□ 0.69
SMCHD1-201ENST00000320876 ACTN2P35609 894 aa19.36■□□□□ 0.69
SMCHD1-201ENST00000320876 CCDC96Q2M329 555 aa19.36■□□□□ 0.69
SMCHD1-201ENST00000320876 TTC31Q49AM3 519 aaPredicted RBP19.36■□□□□ 0.69
SMCHD1-201ENST00000320876 SELENOOQ9BVL4 669 aa19.36■□□□□ 0.69
SMCHD1-201ENST00000320876 HYPKQ9NX55 129 aa19.36■□□□□ 0.69
SMCHD1-201ENST00000320876 IQCA1Q86XH1 822 aa19.36■□□□□ 0.69
SMCHD1-201ENST00000320876 NUTM1Q86Y26 1132 aa19.36■□□□□ 0.69
SMCHD1-201ENST00000320876 TBC1D2Q9BYX2 928 aa19.36■□□□□ 0.69
SMCHD1-201ENST00000320876 CUL5Q93034 780 aa19.36■□□□□ 0.69
SMCHD1-201ENST00000320876 NAP1L3Q99457 506 aaPredicted RBP19.36■□□□□ 0.69
SMCHD1-201ENST00000320876 RNF41Q9H4P4 317 aaPredicted RBP19.36■□□□□ 0.69
SMCHD1-201ENST00000320876 LIG1P18858 919 aa19.36■□□□□ 0.69
SMCHD1-201ENST00000320876 WDR66Q8TBY9 1149 aa19.36■□□□□ 0.69
SMCHD1-201ENST00000320876 RSPH14Q9UHP6 348 aa19.36■□□□□ 0.69
SMCHD1-201ENST00000320876 CFAP65Q6ZU64 1925 aaKnown RBP19.36■□□□□ 0.69
SMCHD1-201ENST00000320876 CCDC194A0A1B0GVG4 234 aa19.36■□□□□ 0.69
SMCHD1-201ENST00000320876 CCDC160A6NGH7 325 aa19.36■□□□□ 0.69
SMCHD1-201ENST00000320876 CATIPQ7Z7H3 387 aa19.36■□□□□ 0.69
SMCHD1-201ENST00000320876 CPLX3Q8WVH0 158 aa19.36■□□□□ 0.69
SMCHD1-201ENST00000320876 PRAM1Q96QH2 718 aa19.36■□□□□ 0.69
SMCHD1-201ENST00000320876 EXOC6BQ9Y2D4 811 aa19.35■□□□□ 0.69
SMCHD1-201ENST00000320876 TCP11L1Q9NUJ3 509 aa19.35■□□□□ 0.69
SMCHD1-201ENST00000320876 CCDC121Q6ZUS5 278 aa19.35■□□□□ 0.69
SMCHD1-201ENST00000320876 SLFN5Q08AF3 891 aa19.35■□□□□ 0.69
SMCHD1-201ENST00000320876 RMND1Q9NWS8 449 aa19.35■□□□□ 0.69
SMCHD1-201ENST00000320876 MXRA7P84157 204 aa19.35■□□□□ 0.69
SMCHD1-201ENST00000320876 TBC1D5Q92609 795 aa19.35■□□□□ 0.69
SMCHD1-201ENST00000320876 SPINK5Q9NQ38 1064 aaPredicted RBP19.35■□□□□ 0.69
SMCHD1-201ENST00000320876 ATAD2Q6PL18 1390 aa19.34■□□□□ 0.69
SMCHD1-201ENST00000320876 ABCC11Q96J66 1382 aa19.34■□□□□ 0.69
SMCHD1-201ENST00000320876 ESCO1Q5FWF5 840 aa19.34■□□□□ 0.69
SMCHD1-201ENST00000320876 ZSCAN16Q9H4T2 348 aaPredicted RBP19.34■□□□□ 0.69
SMCHD1-201ENST00000320876 PRPHP41219 470 aa19.34■□□□□ 0.69
SMCHD1-201ENST00000320876 NSD3Q9BZ95 1437 aa19.34■□□□□ 0.69
SMCHD1-201ENST00000320876 LRSAM1Q6UWE0 723 aa19.34■□□□□ 0.69
SMCHD1-201ENST00000320876 GNAT3A8MTJ3 354 aa19.34■□□□□ 0.69
SMCHD1-201ENST00000320876 ZWINTO95229 277 aa19.34■□□□□ 0.69
SMCHD1-201ENST00000320876 GJB2P29033 226 aa19.34■□□□□ 0.69
SMCHD1-201ENST00000320876 CEP83Q9Y592 693 aa19.34■□□□□ 0.69
SMCHD1-201ENST00000320876 LRPPRCP42704 1394 aaKnown RBP19.33■□□□□ 0.69
SMCHD1-201ENST00000320876 CDK19Q9BWU1 502 aa19.33■□□□□ 0.69
SMCHD1-201ENST00000320876 PABPN1LA6NDY0 278 aaKnown RBP19.33■□□□□ 0.69
SMCHD1-201ENST00000320876 CCDC40Q4G0X9 1142 aa19.33■□□□□ 0.68
SMCHD1-201ENST00000320876 MKNK2Q9HBH9 465 aa19.33■□□□□ 0.68
SMCHD1-201ENST00000320876 NOL3O60936 208 aaKnown RBP19.33■□□□□ 0.68
SMCHD1-201ENST00000320876 SMC6Q96SB8 1091 aa19.33■□□□□ 0.68
SMCHD1-201ENST00000320876 LRRC27Q9C0I9 530 aa19.33■□□□□ 0.68
SMCHD1-201ENST00000320876 CCDC94Q9BW85 323 aaPredicted RBP19.33■□□□□ 0.68
SMCHD1-201ENST00000320876 NFE2L2Q16236 605 aa19.32■□□□□ 0.68
SMCHD1-201ENST00000320876 METTL24Q5JXM2 366 aa19.32■□□□□ 0.68
SMCHD1-201ENST00000320876 GOLGA1Q92805 767 aa19.32■□□□□ 0.68
SMCHD1-201ENST00000320876 RSRC1Q96IZ7 334 aaKnown RBP19.32■□□□□ 0.68
SMCHD1-201ENST00000320876 CTAGE15A4D2H0 777 aa19.32■□□□□ 0.68
SMCHD1-201ENST00000320876 CTAGE8P0CG41 777 aa19.32■□□□□ 0.68
SMCHD1-201ENST00000320876 CTAGE6Q86UF2 777 aa19.32■□□□□ 0.68
SMCHD1-201ENST00000320876 CTAGE4Q8IX94 777 aa19.32■□□□□ 0.68
SMCHD1-201ENST00000320876 MCM6Q14566 821 aa19.32■□□□□ 0.68
SMCHD1-201ENST00000320876 EBAG9O00559 213 aa19.32■□□□□ 0.68
SMCHD1-201ENST00000320876 CAPN2P17655 700 aa19.32■□□□□ 0.68
SMCHD1-201ENST00000320876 CLCN1P35523 988 aa19.32■□□□□ 0.68
SMCHD1-201ENST00000320876 BAG4O95429 457 aaKnown RBP19.32■□□□□ 0.68
SMCHD1-201ENST00000320876 KIF5BP33176 963 aa19.32■□□□□ 0.68
SMCHD1-201ENST00000320876 CAVIN4Q5BKX8 364 aa19.32■□□□□ 0.68
SMCHD1-201ENST00000320876 RTEL1-TNFRSF6BF6WH68 1400 aa19.32■□□□□ 0.68
SMCHD1-201ENST00000320876 PUS7Q96PZ0 661 aaKnown RBP19.32■□□□□ 0.68
SMCHD1-201ENST00000320876 ATAD2BQ9ULI0 1458 aa19.31■□□□□ 0.68
SMCHD1-201ENST00000320876 SCLT1Q96NL6 688 aa19.31■□□□□ 0.68
SMCHD1-201ENST00000320876 RPGRIP1LQ68CZ1 1315 aa19.31■□□□□ 0.68
SMCHD1-201ENST00000320876 ZNF213O14771 459 aa19.31■□□□□ 0.68
SMCHD1-201ENST00000320876 UBASH3AP57075 661 aa19.31■□□□□ 0.68
SMCHD1-201ENST00000320876 AEBP2Q6ZN18 517 aaPredicted RBP19.31■□□□□ 0.68
SMCHD1-201ENST00000320876 CPSF2Q9P2I0 782 aaKnown RBP19.31■□□□□ 0.68
SMCHD1-201ENST00000320876 HMG20BQ9P0W2 317 aa19.31■□□□□ 0.68
SMCHD1-201ENST00000320876 BIN1O00499 593 aa19.31■□□□□ 0.68
SMCHD1-201ENST00000320876 MAP3K12Q12852 859 aa19.31■□□□□ 0.68
SMCHD1-201ENST00000320876 EXOC1Q9NV70 894 aa19.31■□□□□ 0.68
SMCHD1-201ENST00000320876 MINDY4BA8MYZ0 360 aa19.3■□□□□ 0.68
SMCHD1-201ENST00000320876 STRN4Q9NRL3 753 aa19.3■□□□□ 0.68
SMCHD1-201ENST00000320876 ZNF644Q9H582 1327 aaPredicted RBP19.3■□□□□ 0.68
SMCHD1-201ENST00000320876 CCDC102BQ68D86 513 aa19.3■□□□□ 0.68
SMCHD1-201ENST00000320876 CEP57Q86XR8 500 aa19.3■□□□□ 0.68
SMCHD1-201ENST00000320876 PAIP2Q9BPZ3 127 aaKnown RBP19.3■□□□□ 0.68
SMCHD1-201ENST00000320876 ABCF2Q9UG63 623 aa19.3■□□□□ 0.68
SMCHD1-201ENST00000320876 CYLC1P35663 651 aaPredicted RBP19.3■□□□□ 0.68
SMCHD1-201ENST00000320876 LRRC45Q96CN5 670 aa19.3■□□□□ 0.68
SMCHD1-201ENST00000320876 TMOD2Q9NZR1 351 aa19.3■□□□□ 0.68
SMCHD1-201ENST00000320876 SERPINA10Q9UK55 444 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms